Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46949 * 2 1 4 4 C 1.53001 * 109.47004 * 239.99396 * 2 1 3 5 5 C 1.53007 * 109.46693 * 175.00187 * 4 2 1 6 6 C 1.50697 * 109.47073 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99871 * 359.71760 * 6 5 4 8 8 C 1.37878 * 119.99815 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99654 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00121 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46950 * 90.00574 * 10 8 6 12 12 H 1.48502 * 109.47017 * 210.00358 * 10 8 6 13 13 H 1.48499 * 109.46993 * 330.00460 * 10 8 6 14 14 N 1.46899 * 109.46807 * 119.99355 * 2 1 3 15 15 C 1.46899 * 111.00351 * 277.08949 * 14 2 1 16 16 H 1.08996 * 109.46930 * 34.11275 * 15 14 2 17 17 C 1.53005 * 109.47217 * 154.11606 * 15 14 2 18 18 O 1.42899 * 109.47221 * 64.48752 * 17 15 14 19 19 C 1.50702 * 109.46721 * 274.11473 * 15 14 2 20 20 C 1.38252 * 120.00148 * 319.99361 * 19 15 14 21 21 C 1.38218 * 120.00032 * 179.97438 * 20 19 15 22 22 C 1.38262 * 119.99786 * 0.02562 * 21 20 19 23 23 C 1.38211 * 120.00243 * 0.02562 * 22 21 20 24 24 S 1.76187 * 120.00146 * 180.02562 * 23 22 21 25 25 C 1.81404 * 104.45222 * 89.99835 * 24 23 22 26 26 O 1.42104 * 104.28076 * 206.06910 * 24 23 22 27 27 O 1.42104 * 104.27886 * 333.92460 * 24 23 22 28 28 C 1.38219 * 119.99803 * 139.72626 * 19 15 14 29 29 H 1.08998 * 109.46636 * 65.19813 * 1 2 3 30 30 H 1.09000 * 109.46852 * 185.19248 * 1 2 3 31 31 H 1.08996 * 109.46993 * 305.19154 * 1 2 3 32 32 H 1.08995 * 109.47350 * 55.00602 * 4 2 1 33 33 H 1.08990 * 109.47586 * 294.99580 * 4 2 1 34 34 H 1.08997 * 109.47548 * 59.99789 * 5 4 2 35 35 H 1.09001 * 109.47113 * 300.00037 * 5 4 2 36 36 H 0.97004 * 119.99757 * 179.97438 * 9 8 6 37 37 H 1.00900 * 110.99645 * 153.13091 * 14 2 1 38 38 H 1.09001 * 109.46496 * 184.49161 * 17 15 14 39 39 H 1.08994 * 109.46830 * 304.48490 * 17 15 14 40 40 H 0.96696 * 113.99679 * 179.97438 * 18 17 15 41 41 H 1.08001 * 120.00124 * 0.02562 * 20 19 15 42 42 H 1.07994 * 120.00112 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99784 * 180.02562 * 22 21 20 44 44 H 1.08990 * 109.46989 * 60.00312 * 25 24 23 45 45 H 1.09002 * 109.46959 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.46774 * 299.99531 * 25 24 23 47 47 H 1.08001 * 119.99867 * 359.97438 * 28 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 6 4.0673 -1.3234 -2.5442 7 1 3.3692 -1.8075 -3.2111 8 6 5.4186 -1.3603 -2.8154 9 7 5.8570 -1.9804 -3.8892 10 14 6.6267 -0.5298 -1.6577 11 1 7.0614 -1.4974 -0.6185 12 1 7.8090 -0.0646 -2.4265 13 1 5.9700 0.6328 -1.0079 14 7 2.0197 -0.6924 1.1995 15 6 2.0356 0.2099 2.3586 16 1 1.2001 0.9064 2.2884 17 6 1.9098 -0.6095 3.6446 18 8 3.0579 -1.4479 3.7894 19 6 3.3310 0.9797 2.3781 20 6 4.5159 0.3474 2.0503 21 6 5.7039 1.0536 2.0677 22 6 5.7074 2.3923 2.4134 23 6 4.5230 3.0242 2.7422 24 16 4.5273 4.7302 3.1822 25 6 4.2928 5.6039 1.6098 26 8 3.3835 4.8812 4.0118 27 8 5.8351 4.9581 3.6891 28 6 3.3337 2.3194 2.7184 29 1 -0.3632 0.4311 -0.9329 30 1 -0.3633 -1.0235 0.0930 31 1 -0.3633 0.5922 0.8398 32 1 1.6055 -0.2619 -2.1369 33 1 1.7518 -1.7716 -1.2055 34 1 3.9996 -1.0728 -0.4258 35 1 3.8533 0.4368 -1.3573 36 1 6.8077 -2.0061 -4.0802 37 1 2.9324 -1.0915 1.0394 38 1 1.8414 0.0638 4.4991 39 1 1.0129 -1.2268 3.5958 40 1 3.0461 -1.9969 4.5853 41 1 4.5132 -0.6982 1.7798 42 1 6.6295 0.5597 1.8112 43 1 6.6356 2.9441 2.4266 44 1 3.3455 5.3011 1.1638 45 1 4.2831 6.6789 1.7894 46 1 5.1094 5.3566 0.9315 47 1 2.4074 2.8145 2.9700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -126.526352 kcal Electronic energy + Delta-G solvation = -28975.628149 eV Core-core repulsion = 25056.380410 eV Total energy + Delta-G solvation = -3919.247739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.96946 -38.66704 -38.15415 -37.39807 -36.99914 -35.34672 -34.10317 -32.36522 -31.97659 -30.49521 -30.23021 -28.56233 -27.04723 -24.61175 -24.05780 -22.97230 -21.85056 -21.12515 -19.76651 -19.12259 -18.70345 -18.26750 -17.24645 -17.06726 -17.03552 -16.67165 -16.51659 -16.30088 -15.75120 -15.56805 -15.16258 -14.87688 -14.86833 -14.34486 -14.18186 -14.10684 -13.97772 -13.87647 -13.52259 -13.43101 -13.17750 -13.16563 -13.08214 -12.97288 -12.87190 -12.83582 -12.35683 -12.30727 -12.08166 -11.94334 -11.77498 -11.65094 -11.54137 -11.37992 -11.11958 -10.79102 -10.77826 -10.32231 -9.88810 -9.38920 -8.32318 -6.35776 -0.88067 -0.16588 0.22987 1.29103 1.30725 1.42665 1.88244 2.31327 2.40283 2.99663 3.02570 3.14158 3.19040 3.46780 3.69056 3.79565 3.98682 4.05299 4.08595 4.11947 4.15139 4.22010 4.34801 4.41866 4.45403 4.51054 4.66147 4.71832 4.76432 4.79493 4.88425 4.91458 4.94929 4.96271 5.03410 5.05767 5.15308 5.25675 5.39415 5.43476 5.52025 5.55669 5.64474 5.80137 6.20491 6.26736 6.40088 6.72559 7.00363 7.28603 8.84440 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.004563 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.616094 B = 6134.676457 C = 7490.232542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.100 4.100 5 C -0.002 4.002 6 C -0.529 4.529 7 H 0.031 0.969 8 C 0.007 3.993 9 N -0.951 5.951 10 Si 0.937 3.063 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.238 1.238 14 N -0.675 5.675 15 C 0.121 3.879 16 H 0.119 0.881 17 C 0.093 3.907 18 O -0.587 6.587 19 C -0.130 4.130 20 C -0.050 4.050 21 C -0.158 4.158 22 C -0.036 4.036 23 C -0.665 4.665 24 S 2.514 3.486 25 C -0.631 4.631 26 O -0.968 6.968 27 O -0.975 6.975 28 C -0.028 4.028 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.014 0.986 35 H 0.012 0.988 36 H 0.265 0.735 37 H 0.342 0.658 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.392 0.608 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.146 0.854 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 14.002 17.509 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.138 4.138 5 C -0.039 4.039 6 C -0.567 4.567 7 H 0.049 0.951 8 C -0.190 4.190 9 N -0.592 5.592 10 Si 0.760 3.240 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.161 1.161 14 N -0.309 5.309 15 C 0.011 3.989 16 H 0.137 0.863 17 C 0.015 3.985 18 O -0.395 6.395 19 C -0.132 4.132 20 C -0.069 4.069 21 C -0.177 4.177 22 C -0.055 4.055 23 C -0.750 4.750 24 S 2.696 3.304 25 C -0.784 4.784 26 O -0.965 6.965 27 O -0.972 6.972 28 C -0.047 4.047 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.241 0.759 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.176 0.824 46 H 0.165 0.835 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.877 14.253 17.844 24.158 hybrid contribution 1.655 -0.696 -0.692 1.924 sum -6.222 13.556 17.152 22.731 Atomic orbital electron populations 1.21753 0.92896 1.02338 1.01880 1.21612 0.96650 0.95394 0.88925 0.94199 1.21540 0.95547 1.00011 0.96739 1.19463 0.94480 0.95376 0.94588 1.21495 0.92571 1.33954 1.08644 0.95078 1.25972 1.00584 0.95660 0.96773 1.70073 1.15179 1.45367 1.28561 0.85862 0.78276 0.80575 0.79315 1.19098 1.21266 1.16083 1.60879 1.32996 1.33237 1.03770 1.20975 0.93505 0.92801 0.91636 0.86344 1.22209 0.88556 0.92784 0.94931 1.86487 1.43999 1.59327 1.49646 1.20858 0.96788 0.94927 1.00653 1.21321 0.92841 0.99668 0.93070 1.21492 0.98864 0.95556 1.01789 1.21120 0.97579 0.94759 0.92004 1.30701 0.99378 1.26131 1.18816 1.04685 0.73284 0.74117 0.78270 1.30081 1.14256 1.14955 1.19132 1.93531 1.52007 1.85606 1.65405 1.93533 1.40062 1.84866 1.78758 1.21073 0.97491 0.93522 0.92579 0.92076 0.92480 0.91314 0.92462 0.93134 0.96830 0.97011 0.92619 0.83549 0.92078 0.91530 0.75930 0.86491 0.85234 0.82843 0.82989 0.82392 0.83530 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.34 71.98 0.67 -2.32 16 2 C 0.08 2.42 2.47 44.92 0.11 2.53 16 3 H 0.04 1.15 7.69 -2.39 -0.02 1.13 16 4 C -0.10 -3.82 4.76 30.60 0.15 -3.67 16 5 C 0.00 -0.07 3.86 29.85 0.12 0.04 16 6 C -0.53 -30.46 9.66 25.60 0.25 -30.21 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 8 C 0.01 0.40 5.47 84.65 0.46 0.86 16 9 N -0.95 -60.01 13.96 21.45 0.30 -59.72 16 10 Si 0.94 43.78 27.47 68.60 1.88 45.66 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 14 N -0.68 -19.07 5.98 -473.30 -2.83 -21.90 16 15 C 0.12 2.75 2.48 44.17 0.11 2.86 16 16 H 0.12 2.15 6.87 -2.39 -0.02 2.14 16 17 C 0.09 1.79 6.87 71.98 0.49 2.29 16 18 O -0.59 -12.92 12.05 -148.98 -1.80 -14.72 16 19 C -0.13 -3.35 4.53 -19.86 -0.09 -3.44 16 20 C -0.05 -1.52 8.11 22.27 0.18 -1.34 16 21 C -0.16 -4.58 10.05 22.27 0.22 -4.36 16 22 C -0.04 -0.90 9.47 22.27 0.21 -0.69 16 23 C -0.66 -14.85 5.65 22.27 0.13 -14.73 16 24 S 2.51 44.31 5.80 -56.49 -0.33 43.99 16 25 C -0.63 -5.31 10.80 113.37 1.22 -4.09 16 26 O -0.97 -21.99 17.14 -127.65 -2.19 -24.17 16 27 O -0.97 -23.67 17.13 -127.65 -2.19 -25.86 16 28 C -0.03 -0.62 9.09 22.27 0.20 -0.42 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.24 7.36 -2.39 -0.02 1.23 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.01 0.61 5.52 -2.39 -0.01 0.60 16 35 H 0.01 0.53 7.20 -2.39 -0.02 0.51 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.34 11.40 4.11 -89.69 -0.37 11.03 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.39 5.20 9.12 -74.06 -0.68 4.52 16 41 H 0.12 3.87 5.94 -2.91 -0.02 3.85 16 42 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.15 3.20 7.57 -2.91 -0.02 3.18 16 44 H 0.15 0.86 8.14 -2.40 -0.02 0.84 16 45 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.16 2.73 7.56 -2.91 -0.02 2.71 16 Total: -1.00 -81.26 389.47 -2.82 -84.08 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.12 Total: 29.29 kcal Atomic # 6 Polarization: -61.10 SS G_CDS: 4.44 Total: -56.66 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.53 Total: -81.61 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -6.17 Total: -64.75 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.33 Total: 43.99 kcal Total: -81.26 -2.82 -84.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.446 kcal (2) G-P(sol) polarization free energy of solvation -81.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds