Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47149 * 2 1 4 4 N 1.46501 * 109.46929 * 239.99415 * 2 1 3 5 5 C 1.34769 * 120.00011 * 85.00456 * 4 2 1 6 6 O 1.21358 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.49453 * 120.00473 * 179.97438 * 5 4 2 8 8 O 1.21351 * 119.99369 * 5.09242 * 7 5 4 9 9 N 1.34769 * 120.00243 * 185.08548 * 7 5 4 10 10 C 1.46497 * 120.00011 * 185.03773 * 9 7 5 11 11 C 1.53005 * 109.47129 * 184.78311 * 10 9 7 12 12 C 1.50703 * 115.54676 * 294.81585 * 11 10 9 13 13 H 1.07998 * 119.99578 * 95.20301 * 12 11 10 14 14 C 1.37876 * 120.00032 * 274.92215 * 12 11 10 15 15 N 1.31513 * 120.00087 * 355.42383 * 14 12 11 16 16 Si 1.86797 * 119.99764 * 175.41970 * 14 12 11 17 17 H 1.48506 * 109.47089 * 90.00605 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00447 * 16 14 12 19 19 H 1.48505 * 109.47313 * 330.00182 * 16 14 12 20 20 C 1.52992 * 117.50017 * 80.49188 * 11 10 9 21 21 C 1.52998 * 117.49741 * 149.15238 * 11 10 9 22 22 C 1.50706 * 109.46871 * 119.99489 * 2 1 3 23 23 C 1.38362 * 119.84401 * 79.72776 * 22 2 1 24 24 C 1.37951 * 120.14920 * 179.76624 * 23 22 2 25 25 C 1.39633 * 119.84294 * 0.50321 * 24 23 22 26 26 C 1.43207 * 120.14641 * 179.77044 * 25 24 23 27 27 N 6.84446 * 109.46287 * 119.99482 * 2 1 3 28 28 C 1.39629 * 119.70138 * 359.75005 * 25 24 23 29 29 C 1.37946 * 119.84564 * 359.97438 * 28 25 24 30 30 H 1.08998 * 109.47196 * 299.99946 * 1 2 3 31 31 H 1.08998 * 109.46872 * 60.00699 * 1 2 3 32 32 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 33 33 H 0.97004 * 120.00150 * 264.99778 * 4 2 1 34 34 H 0.97000 * 120.00088 * 5.04363 * 9 7 5 35 35 H 1.09004 * 109.47290 * 64.78043 * 10 9 7 36 36 H 1.09002 * 109.47245 * 304.78204 * 10 9 7 37 37 H 0.97005 * 120.00163 * 184.99518 * 15 14 12 38 38 H 1.09001 * 117.49686 * 215.00072 * 20 11 10 39 39 H 1.09004 * 117.49963 * 0.02562 * 20 11 10 40 40 H 1.09001 * 117.50544 * 359.96959 * 21 11 10 41 41 H 1.09001 * 117.50141 * 144.97625 * 21 11 10 42 42 H 1.07999 * 119.92693 * 0.02562 * 23 22 2 43 43 H 1.08004 * 120.07936 * 180.28098 * 24 23 22 44 44 H 1.07998 * 120.07807 * 179.97438 * 28 25 24 45 45 H 1.07999 * 119.92297 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8581 1.1589 -2.4117 7 6 2.6457 -0.7229 -3.5772 8 8 2.8467 -1.9193 -3.5474 9 7 2.8720 -0.0296 -4.7105 10 6 3.2544 -0.7344 -5.9365 11 6 3.5656 0.2845 -7.0347 12 6 2.3993 1.1205 -7.4950 13 1 2.2329 2.0977 -7.0665 14 6 1.5480 0.6401 -8.4674 15 7 1.8040 -0.5071 -9.0572 16 14 0.0309 1.6187 -8.9469 17 1 0.3707 2.5477 -10.0545 18 1 -1.0381 0.6886 -9.3914 19 1 -0.4462 2.3978 -7.7761 20 6 4.9448 0.9464 -7.0139 21 6 4.6143 -0.1014 -8.0797 22 6 2.0323 -0.7103 1.2306 23 6 2.0600 -2.0933 1.2642 24 6 2.5231 -2.7499 2.3856 25 6 2.9545 -2.0157 3.4922 26 6 3.4318 -2.6908 4.6615 27 7 3.8106 -3.2262 5.5891 28 6 2.9189 -0.6204 3.4533 29 6 2.4588 0.0233 2.3233 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6319 -1.1525 34 1 2.7818 0.9362 -4.7144 35 1 2.4337 -1.3758 -6.2579 36 1 4.1379 -1.3435 -5.7450 37 1 1.2465 -0.8105 -9.7908 38 1 5.0086 1.9866 -7.3333 39 1 5.6307 0.6557 -6.2182 40 1 5.0830 -1.0809 -7.9847 41 1 4.4606 0.2491 -9.1003 42 1 1.7223 -2.6599 0.4091 43 1 2.5484 -3.8294 2.4089 44 1 3.2507 -0.0465 4.3059 45 1 2.4310 1.1025 2.2918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321550321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = 5.769631 kcal Electronic energy + Delta-G solvation = -27909.132911 eV Core-core repulsion = 23892.470756 eV Total energy + Delta-G solvation = -4016.662154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76030 -39.89498 -38.35083 -37.08202 -36.75575 -35.74990 -33.51454 -32.18292 -31.99579 -31.58768 -29.94624 -27.14288 -25.59665 -25.15692 -23.75624 -23.29999 -21.39958 -21.09737 -20.04894 -19.60028 -19.39490 -18.28542 -16.94154 -16.37196 -16.09944 -15.85407 -15.55614 -15.16738 -14.95821 -14.73249 -14.58211 -14.47556 -14.20653 -14.03148 -13.88548 -13.75510 -13.33554 -13.21269 -13.14248 -12.76165 -12.64891 -12.54683 -12.10104 -11.91618 -11.67040 -11.65022 -11.39719 -11.33036 -11.02193 -10.97409 -10.55218 -10.27654 -9.66337 -9.58174 -9.52423 -9.32742 -9.21423 -9.12028 -8.56796 -8.42938 -8.21509 -6.11352 -4.21095 0.19919 0.79276 1.69697 2.22647 2.38195 2.62723 3.24624 3.32689 3.35632 3.36165 3.39564 3.52195 3.94111 4.05345 4.28197 4.33435 4.33867 4.73468 4.81136 4.83454 4.94715 4.99956 5.16187 5.17169 5.31068 5.35787 5.40193 5.54688 5.64468 5.74893 5.87114 5.92704 5.93445 6.18703 6.23370 6.25472 6.36764 6.44286 6.63347 6.71599 6.92785 7.03379 7.05882 7.11933 7.29493 7.47013 7.75581 7.78873 8.07403 8.28608 8.45973 8.81092 9.46670 10.95594 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002081 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.405318 B =13449.422728 C =14095.110020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.177 3.823 3 H 0.105 0.895 4 N -0.705 5.705 5 C 0.512 3.488 6 O -0.515 6.515 7 C 0.495 3.505 8 O -0.541 6.541 9 N -0.665 5.665 10 C 0.159 3.841 11 C 0.020 3.980 12 C -0.500 4.500 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.210 4.210 21 C -0.139 4.139 22 C -0.060 4.060 23 C -0.113 4.113 24 C -0.063 4.063 25 C -0.031 4.031 26 C 0.255 3.745 27 N -0.418 5.418 28 C -0.066 4.066 29 C -0.106 4.106 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 -0.513 20.957 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.123 0.877 4 N -0.360 5.360 5 C 0.293 3.707 6 O -0.389 6.389 7 C 0.274 3.726 8 O -0.420 6.420 9 N -0.314 5.314 10 C 0.037 3.963 11 C 0.019 3.981 12 C -0.538 4.538 13 H 0.080 0.920 14 C -0.131 4.131 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.247 4.247 21 C -0.177 4.177 22 C -0.061 4.061 23 C -0.131 4.131 24 C -0.084 4.084 25 C -0.035 4.035 26 C -0.061 4.061 27 N -0.093 5.093 28 C -0.086 4.086 29 C -0.125 4.125 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.005 -1.497 22.222 22.272 hybrid contribution -0.938 0.589 -0.768 1.348 sum -0.932 -0.908 21.454 21.493 Atomic orbital electron populations 1.22205 0.93291 1.03052 1.03407 1.19950 0.94881 0.97042 0.80824 0.87673 1.45899 1.66630 1.14990 1.08523 1.20519 0.78530 0.86971 0.84665 1.90765 1.48131 1.15353 1.84649 1.19887 0.80618 0.87396 0.84687 1.90716 1.52350 1.14438 1.84468 1.45896 1.64311 1.12347 1.08885 1.21223 0.99090 0.94457 0.81549 1.19045 0.88476 0.96158 0.94430 1.20371 1.08816 1.01973 1.22590 0.91994 1.24992 0.97514 0.94656 0.95953 1.69986 1.39062 1.19738 1.22354 0.86616 0.82901 0.79813 0.78892 1.20658 1.21180 1.19629 1.23033 1.01366 0.97933 1.02356 1.22474 1.03207 0.96339 0.95712 1.20214 0.96597 0.94009 0.95316 1.20965 0.99936 0.93779 0.98458 1.21185 0.95451 1.00383 0.91336 1.16033 1.05025 0.92727 0.89680 1.25727 0.93654 0.93628 0.93063 1.81279 1.09029 1.08202 1.10750 1.21172 0.96848 0.92104 0.98512 1.20966 0.98576 1.00691 0.92248 0.91031 0.90943 0.91823 0.75109 0.74968 0.90750 0.93358 0.92844 0.90208 0.91640 0.91729 0.89388 0.84573 0.84590 0.84665 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.46 37.16 0.35 -0.88 16 2 C 0.18 1.44 2.77 -69.08 -0.19 1.25 16 3 H 0.11 0.91 7.43 -51.93 -0.39 0.52 16 4 N -0.70 -7.48 5.02 -55.36 -0.28 -7.76 16 5 C 0.51 7.47 7.85 -11.59 -0.09 7.38 16 6 O -0.51 -8.46 16.16 5.49 0.09 -8.37 16 7 C 0.49 8.62 7.88 -11.59 -0.09 8.53 16 8 O -0.54 -10.22 16.47 5.50 0.09 -10.13 16 9 N -0.66 -12.61 5.46 -60.73 -0.33 -12.95 16 10 C 0.16 3.40 5.53 -4.04 -0.02 3.38 16 11 C 0.02 0.45 1.47 -155.66 -0.23 0.22 16 12 C -0.50 -12.62 8.59 -34.44 -0.30 -12.91 16 13 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 14 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 15 N -0.88 -23.59 12.65 55.43 0.70 -22.89 16 16 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.21 -4.24 9.96 -26.70 -0.27 -4.51 16 21 C -0.14 -3.07 9.14 -26.70 -0.24 -3.32 16 22 C -0.06 -0.38 4.96 -104.53 -0.52 -0.90 16 23 C -0.11 -0.66 9.03 -39.64 -0.36 -1.02 16 24 C -0.06 -0.35 9.76 -39.17 -0.38 -0.74 16 25 C -0.03 -0.20 5.73 -106.93 -0.61 -0.81 16 26 C 0.25 2.12 15.33 -22.47 -0.34 1.78 16 27 N -0.42 -4.54 18.54 41.84 0.78 -3.77 16 28 C -0.07 -0.34 9.76 -39.17 -0.38 -0.72 16 29 C -0.11 -0.55 9.65 -39.64 -0.38 -0.93 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.41 3.94 6.35 -40.82 -0.26 3.68 16 34 H 0.41 7.77 7.84 -40.82 -0.32 7.45 16 35 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 37 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 42 H 0.14 0.68 6.92 -52.49 -0.36 0.32 16 43 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 44 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.14 0.48 8.03 -52.49 -0.42 0.06 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -30.17 399.47 -8.05 -38.23 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.94 Total: 8.71 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -4.16 Total: -2.39 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.87 Total: -47.37 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.18 Total: -18.50 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.17 -8.05 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321550321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.995 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds