Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00113 * 2 1 4 4 H 1.09003 * 109.46612 * 36.25494 * 3 2 1 5 5 C 1.52999 * 109.46778 * 276.25531 * 3 2 1 6 6 C 1.52993 * 109.46994 * 156.25486 * 3 2 1 7 7 N 1.46499 * 109.47757 * 293.74393 * 6 3 2 8 8 C 1.46504 * 119.99840 * 279.59918 * 7 6 3 9 9 C 1.53000 * 109.46729 * 306.85584 * 8 7 6 10 10 C 1.52996 * 109.47114 * 66.85485 * 8 7 6 11 11 S 1.65598 * 120.00302 * 99.59331 * 7 6 3 12 12 O 1.42099 * 106.40525 * 149.46787 * 11 7 6 13 13 O 1.42105 * 106.40278 * 16.54793 * 11 7 6 14 14 C 1.76206 * 107.21821 * 263.00938 * 11 7 6 15 15 C 1.38640 * 119.74947 * 96.06233 * 14 11 7 16 16 C 1.37613 * 120.24725 * 180.27852 * 15 14 11 17 17 C 1.40719 * 119.74400 * 359.51415 * 16 15 14 18 18 C 1.41397 * 120.24241 * 180.23392 * 17 16 15 19 19 H 1.08003 * 119.99778 * 197.05261 * 18 17 16 20 20 C 1.39948 * 120.00030 * 17.04501 * 18 17 16 21 21 N 1.30824 * 119.99873 * 28.37383 * 20 18 17 22 22 Si 1.86794 * 120.00025 * 208.36620 * 20 18 17 23 23 H 1.48502 * 109.47083 * 95.00225 * 22 20 18 24 24 H 1.48499 * 109.47089 * 214.99907 * 22 20 18 25 25 H 1.48499 * 109.47333 * 335.00133 * 22 20 18 26 26 C 1.40710 * 119.50975 * 0.48453 * 17 16 15 27 27 C 1.37615 * 119.74866 * 359.74652 * 26 17 16 28 28 H 1.09003 * 109.46940 * 183.93788 * 1 2 3 29 29 H 1.09002 * 109.47212 * 303.92907 * 1 2 3 30 30 H 1.08997 * 109.47447 * 63.93393 * 1 2 3 31 31 H 1.09004 * 109.47129 * 60.00171 * 5 3 2 32 32 H 1.09002 * 109.46819 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47275 * 300.00141 * 5 3 2 34 34 H 1.08998 * 109.47161 * 173.74053 * 6 3 2 35 35 H 1.09002 * 109.47337 * 53.74400 * 6 3 2 36 36 H 1.08995 * 109.47253 * 186.85919 * 8 7 6 37 37 H 1.08996 * 109.47108 * 60.00707 * 9 8 7 38 38 H 1.09008 * 109.46865 * 180.02562 * 9 8 7 39 39 H 1.09000 * 109.47253 * 299.99835 * 9 8 7 40 40 H 1.09002 * 109.47057 * 45.78380 * 10 8 7 41 41 H 1.09001 * 109.47106 * 165.77595 * 10 8 7 42 42 H 1.08997 * 109.47668 * 285.77650 * 10 8 7 43 43 H 1.08000 * 119.87385 * 359.97438 * 15 14 11 44 44 H 1.08000 * 120.12534 * 179.72245 * 16 15 14 45 45 H 0.97000 * 120.00006 * 179.97438 * 21 20 18 46 46 H 1.08005 * 120.12446 * 179.72853 * 26 17 16 47 47 H 1.08002 * 119.87911 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.4009 1.9744 0.6078 5 6 2.0741 1.8352 -1.4339 6 6 3.4239 1.2343 0.5808 7 7 3.3519 0.8706 1.9981 8 6 3.0395 1.8916 3.0014 9 6 3.9985 3.0730 2.8422 10 6 1.6003 2.3732 2.8079 11 16 3.6234 -0.6944 2.4663 12 8 4.1864 -0.6316 3.7694 13 8 4.2655 -1.3349 1.3723 14 6 2.0494 -1.4671 2.6410 15 6 1.5298 -2.2141 1.5950 16 6 0.2991 -2.8172 1.7183 17 6 -0.4279 -2.6819 2.9156 18 6 -1.6913 -3.3012 3.0555 19 1 -2.3640 -2.9847 3.8388 20 6 -2.0701 -4.3241 2.1787 21 7 -1.1588 -5.0834 1.6269 22 14 -3.8767 -4.6055 1.7967 23 1 -4.2367 -3.8858 0.5486 24 1 -4.1246 -6.0589 1.6190 25 1 -4.7053 -4.0956 2.9186 26 6 0.1094 -1.9213 3.9705 27 6 1.3399 -1.3231 3.8233 28 1 -0.3633 -1.0253 0.0706 29 1 -0.3634 0.5736 0.8527 30 1 -0.3634 0.4515 -0.9231 31 1 1.0669 1.8859 -1.8477 32 1 2.5170 2.8312 -1.4339 33 1 2.6833 1.1662 -2.0417 34 1 3.9078 2.2056 0.4791 35 1 4.0008 0.4828 0.0418 36 1 3.1494 1.4663 3.9989 37 1 3.8886 3.4984 1.8447 38 1 3.7664 3.8325 3.5889 39 1 5.0239 2.7299 2.9800 40 1 0.9450 1.5134 2.6690 41 1 1.2832 2.9333 3.6876 42 1 1.5473 3.0162 1.9293 43 1 2.0909 -2.3189 0.6782 44 1 -0.1058 -3.3949 0.9006 45 1 -1.4213 -5.7927 1.0195 46 1 -0.4421 -1.8073 4.8921 47 1 1.7545 -0.7392 4.6317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363971863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = -107.709634 kcal Electronic energy + Delta-G solvation = -30352.650026 eV Core-core repulsion = 26434.218241 eV Total energy + Delta-G solvation = -3918.431784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -38.65880 -37.44886 -36.76021 -36.24632 -34.99608 -34.01622 -32.34643 -30.49590 -30.16471 -29.35534 -27.22921 -26.48400 -25.78012 -25.44948 -21.43246 -21.32172 -20.94031 -20.55644 -18.50394 -17.59215 -17.38331 -16.52930 -16.29294 -15.57424 -15.39531 -14.96431 -14.61370 -14.22291 -14.07859 -13.98729 -13.49888 -13.31753 -13.09792 -12.97593 -12.66313 -12.49257 -12.37661 -12.25449 -12.06033 -12.04417 -11.77453 -11.53074 -11.41285 -11.34932 -11.25828 -11.19447 -11.13993 -11.08807 -10.97751 -10.81856 -10.54573 -10.39685 -10.22480 -9.65518 -9.50259 -9.29188 -9.21164 -8.58376 -7.90047 -7.52066 -7.17397 -4.69994 1.35489 2.39855 2.87787 2.92522 2.95547 3.06695 3.65111 3.67469 4.11637 4.27206 4.67307 4.88092 4.98798 5.06095 5.23420 5.25455 5.32539 5.34668 5.48004 5.54591 5.63302 5.63873 5.72908 5.75952 5.82083 5.85319 5.90451 5.94742 6.02603 6.11082 6.14572 6.28900 6.33839 6.38283 6.43828 6.50447 6.72871 6.83814 6.94206 7.15012 7.18647 7.44431 7.56192 7.62845 7.79898 7.87028 8.04682 8.41586 8.60547 8.77595 9.74412 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.004420 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.886306 B = 6333.744286 C = 6926.412626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.051 3.949 4 H 0.073 0.927 5 C -0.176 4.176 6 C 0.123 3.877 7 N -0.994 5.994 8 C 0.143 3.857 9 C -0.157 4.157 10 C -0.169 4.169 11 S 2.689 3.311 12 O -0.991 6.991 13 O -0.981 6.981 14 C -0.777 4.777 15 C 0.024 3.976 16 C -0.206 4.206 17 C 0.140 3.860 18 C -0.440 4.440 19 H 0.086 0.914 20 C 0.080 3.920 21 N -0.750 5.750 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.245 4.245 27 C 0.003 3.997 28 H 0.095 0.905 29 H 0.038 0.962 30 H 0.027 0.973 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.289 0.711 46 H 0.094 0.906 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 13.331 -3.832 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.282 6.282 3 C -0.008 4.008 4 H 0.091 0.909 5 C -0.234 4.234 6 C -0.003 4.003 7 N -0.828 5.828 8 C 0.037 3.963 9 C -0.216 4.216 10 C -0.227 4.227 11 S 2.791 3.209 12 O -0.981 6.981 13 O -0.972 6.972 14 C -0.873 4.873 15 C 0.004 3.996 16 C -0.226 4.226 17 C 0.136 3.864 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.144 4.144 21 N -0.371 5.371 22 Si 0.731 3.269 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.266 4.266 27 C -0.018 4.018 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.123 0.877 44 H 0.134 0.866 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.816 12.604 -3.839 13.473 hybrid contribution -1.908 -0.007 -0.270 1.927 sum 0.908 12.598 -4.109 13.282 Atomic orbital electron populations 1.22781 0.81098 1.03842 0.98339 1.88044 1.19599 1.25798 1.94773 1.22909 0.95941 0.86640 0.95330 0.90943 1.22281 1.02335 1.01010 0.97761 1.21369 0.95504 1.02744 0.80680 1.57801 1.86926 1.25915 1.12155 1.20767 0.94363 0.89174 0.92031 1.22112 0.99812 0.97751 1.01940 1.22435 0.96796 1.02047 1.01472 1.01326 0.75436 0.71831 0.72335 1.93464 1.77991 1.86380 1.40304 1.93451 1.75212 1.73693 1.54799 1.29011 1.25926 1.27675 1.04736 1.20145 0.94240 0.90779 0.94433 1.21170 0.96282 1.06560 0.98588 1.17755 0.90974 0.87352 0.90276 1.19905 1.00684 1.13851 1.12255 0.89603 1.26126 1.00380 0.94093 0.93846 1.69901 1.36515 1.11023 1.19623 0.86291 0.81874 0.78476 0.80288 1.18828 1.19895 1.18116 1.20875 0.97495 1.09235 0.98947 1.20060 0.93589 0.94732 0.93374 0.88693 0.94363 0.95492 0.92515 0.92117 0.91671 0.89614 0.88255 0.88547 0.92293 0.91748 0.92184 0.91012 0.92117 0.92388 0.87730 0.86648 0.89950 0.88758 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.12 101.05 1.02 1.59 16 2 O -0.36 -6.04 7.74 -35.23 -0.27 -6.31 16 3 C 0.05 0.68 2.69 -26.74 -0.07 0.61 16 4 H 0.07 0.89 4.27 -51.93 -0.22 0.67 16 5 C -0.18 -1.88 9.43 37.16 0.35 -1.53 16 6 C 0.12 1.66 5.13 -4.05 -0.02 1.64 16 7 N -0.99 -15.45 2.74 -107.31 -0.29 -15.75 16 8 C 0.14 1.88 3.26 -67.93 -0.22 1.66 16 9 C -0.16 -1.62 8.92 37.16 0.33 -1.29 16 10 C -0.17 -2.00 7.87 37.16 0.29 -1.71 16 11 S 2.69 54.65 5.66 -107.50 -0.61 54.04 16 12 O -0.99 -21.92 16.16 -57.17 -0.92 -22.85 16 13 O -0.98 -22.02 15.52 -57.17 -0.89 -22.91 16 14 C -0.78 -17.21 5.74 -39.29 -0.23 -17.44 16 15 C 0.02 0.56 6.57 -39.66 -0.26 0.30 16 16 C -0.21 -5.01 7.34 -38.87 -0.29 -5.30 16 17 C 0.14 3.47 5.63 -106.82 -0.60 2.87 16 18 C -0.44 -10.66 9.01 -37.74 -0.34 -11.00 16 19 H 0.09 1.99 7.98 -52.48 -0.42 1.57 16 20 C 0.08 1.82 4.96 -17.34 -0.09 1.74 16 21 N -0.75 -17.80 11.16 55.55 0.62 -17.18 16 22 Si 0.91 16.78 29.64 -169.99 -5.04 11.75 16 23 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 25 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 26 C -0.24 -5.72 9.80 -38.88 -0.38 -6.10 16 27 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 28 H 0.09 1.70 6.36 -51.93 -0.33 1.37 16 29 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 30 H 0.03 0.36 7.51 -51.93 -0.39 -0.03 16 31 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.88 6.25 -51.93 -0.32 0.56 16 35 H 0.10 1.49 6.78 -51.93 -0.35 1.14 16 36 H 0.10 1.39 7.01 -51.93 -0.36 1.02 16 37 H 0.06 0.53 6.62 -51.93 -0.34 0.18 16 38 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 43 H 0.10 2.42 7.15 -52.49 -0.38 2.04 16 44 H 0.12 2.88 6.03 -52.49 -0.32 2.56 16 45 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 46 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 47 H 0.10 1.92 7.74 -52.49 -0.41 1.51 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -29.21 376.62 -9.67 -38.88 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.07 Total: 8.93 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: -0.87 Total: -34.28 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.33 Total: -32.92 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -2.08 Total: -52.07 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.04 Total: 11.75 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.61 Total: 54.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.21 -9.67 -38.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363971863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.829 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds