Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99698 * 2 1 4 4 H 1.09001 * 109.47314 * 329.99859 * 3 2 1 5 5 C 1.52998 * 109.47398 * 90.00052 * 3 2 1 6 6 C 1.52998 * 109.46783 * 209.99836 * 3 2 1 7 7 N 1.46499 * 109.47616 * 65.51836 * 6 3 2 8 8 C 1.46507 * 119.99973 * 86.07603 * 7 6 3 9 9 C 1.52995 * 109.47216 * 296.00380 * 8 7 6 10 10 C 1.53003 * 109.46875 * 56.00040 * 8 7 6 11 11 S 1.65592 * 120.00177 * 266.08526 * 7 6 3 12 12 O 1.42102 * 106.40198 * 23.53455 * 11 7 6 13 13 O 1.42097 * 106.40376 * 156.45392 * 11 7 6 14 14 C 1.76198 * 107.21839 * 269.99423 * 11 7 6 15 15 C 1.38631 * 119.75122 * 269.72953 * 14 11 7 16 16 C 1.37626 * 120.24986 * 179.71788 * 15 14 11 17 17 C 1.40711 * 119.74063 * 0.57182 * 16 15 14 18 18 C 1.41395 * 120.24229 * 179.68009 * 17 16 15 19 19 H 1.08007 * 120.00254 * 209.01277 * 18 17 16 20 20 C 1.39943 * 120.00249 * 29.01237 * 18 17 16 21 21 N 1.30829 * 119.99547 * 10.42238 * 20 18 17 22 22 Si 1.86796 * 120.00215 * 190.42929 * 20 18 17 23 23 H 1.48497 * 109.47525 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47252 * 120.00087 * 22 20 18 25 25 H 1.48504 * 109.47210 * 239.99679 * 22 20 18 26 26 C 1.40722 * 119.51640 * 359.70131 * 17 16 15 27 27 C 1.37613 * 119.74103 * 0.02562 * 26 17 16 28 28 H 1.08991 * 109.47466 * 300.00256 * 1 2 3 29 29 H 1.09008 * 109.46908 * 60.00279 * 1 2 3 30 30 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46970 * 300.00250 * 5 3 2 32 32 H 1.09001 * 109.47045 * 59.99643 * 5 3 2 33 33 H 1.08996 * 109.47140 * 180.02562 * 5 3 2 34 34 H 1.08995 * 109.47375 * 305.51570 * 6 3 2 35 35 H 1.09008 * 109.47297 * 185.51979 * 6 3 2 36 36 H 1.09000 * 109.46935 * 176.00046 * 8 7 6 37 37 H 1.09005 * 109.47379 * 67.51744 * 9 8 7 38 38 H 1.09005 * 109.47305 * 187.51697 * 9 8 7 39 39 H 1.08998 * 109.47220 * 307.51822 * 9 8 7 40 40 H 1.09004 * 109.46492 * 59.99907 * 10 8 7 41 41 H 1.08994 * 109.46919 * 179.97438 * 10 8 7 42 42 H 1.08995 * 109.47483 * 300.00470 * 10 8 7 43 43 H 1.08000 * 119.87567 * 359.97363 * 15 14 11 44 44 H 1.07993 * 120.12956 * 180.27125 * 16 15 14 45 45 H 0.97006 * 119.99413 * 179.97438 * 21 20 18 46 46 H 1.07999 * 120.12844 * 179.97438 * 26 17 16 47 47 H 1.08000 * 119.87668 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3588 1.2633 -0.7212 7 7 3.1467 0.9452 -2.1354 8 6 2.8534 2.0162 -3.0912 9 6 1.5155 2.6665 -2.7336 10 6 3.9630 3.0681 -3.0346 11 16 3.2382 -0.6248 -2.6538 12 8 2.9767 -1.4382 -1.5183 13 8 2.4788 -0.6965 -3.8527 14 6 4.9137 -0.9275 -3.1073 15 6 5.3268 -0.6939 -4.4099 16 6 6.6344 -0.9213 -4.7739 17 6 7.5503 -1.4041 -3.8211 18 6 8.8947 -1.6479 -4.1853 19 1 9.4634 -2.4098 -3.6728 20 6 9.4884 -0.9020 -5.2097 21 7 8.8779 0.1503 -5.6908 22 14 11.1525 -1.4088 -5.8902 23 1 11.6281 -2.6238 -5.1813 24 1 11.0264 -1.6992 -7.3411 25 1 12.1264 -0.3059 -5.6891 26 6 7.1186 -1.6431 -2.5033 27 6 5.8076 -1.4033 -2.1603 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.2568 1.8015 1.9563 32 1 2.8829 1.0776 1.9563 33 1 2.6605 2.7674 1.4424 34 1 3.9897 0.4989 -0.2676 35 1 3.8468 2.2343 -0.6364 36 1 2.7979 1.6003 -4.0971 37 1 1.6110 3.1970 -1.7861 38 1 1.2325 3.3699 -3.5168 39 1 0.7497 1.8962 -2.6430 40 1 4.9161 2.6047 -3.2894 41 1 3.7450 3.8647 -3.7459 42 1 4.0186 3.4840 -2.0287 43 1 4.6207 -0.3281 -5.1408 44 1 6.9551 -0.7345 -5.7881 45 1 9.2896 0.6676 -6.4007 46 1 7.8131 -2.0141 -1.7641 47 1 5.4740 -1.5855 -1.1495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363971875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = -109.656383 kcal Electronic energy + Delta-G solvation = -29397.923698 eV Core-core repulsion = 25479.407496 eV Total energy + Delta-G solvation = -3918.516202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.71906 -37.53464 -36.81247 -36.24305 -34.90880 -33.94917 -32.47274 -30.52823 -30.18363 -29.42980 -27.17121 -26.67158 -25.78496 -25.67979 -21.45183 -21.42542 -21.07295 -20.61646 -18.47815 -17.59177 -17.38165 -16.62031 -16.31889 -15.63212 -15.44484 -15.12022 -14.70948 -14.23100 -14.10750 -13.95794 -13.53031 -13.31711 -13.15230 -13.07282 -12.66700 -12.65315 -12.33975 -12.26377 -12.08847 -12.04863 -11.85058 -11.79066 -11.49145 -11.35941 -11.24695 -11.17833 -11.13411 -11.07985 -11.00146 -10.86292 -10.49599 -10.39899 -10.28621 -9.71565 -9.58362 -9.54356 -9.43553 -8.59639 -7.85450 -7.65491 -7.03643 -4.76381 1.33496 2.29584 2.91546 2.92298 2.95134 2.98026 3.65745 3.71414 3.92491 4.33094 4.67898 4.87237 4.90035 5.05777 5.14927 5.18807 5.26899 5.33110 5.36870 5.42096 5.44980 5.47813 5.61224 5.66450 5.74706 5.77327 5.81398 5.88866 5.92484 5.97078 6.08176 6.10923 6.15671 6.24557 6.42416 6.51991 6.70842 6.75825 6.91080 7.07450 7.12412 7.39692 7.40450 7.45512 7.67344 7.82259 8.02524 8.37740 8.56900 8.68994 9.87289 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.003337 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.369316 B = 8387.686268 C = 8671.674688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.053 3.947 4 H 0.070 0.930 5 C -0.173 4.173 6 C 0.130 3.870 7 N -0.994 5.994 8 C 0.142 3.858 9 C -0.160 4.160 10 C -0.163 4.163 11 S 2.688 3.312 12 O -0.956 6.956 13 O -0.988 6.988 14 C -0.784 4.784 15 C -0.019 4.019 16 C -0.176 4.176 17 C 0.141 3.859 18 C -0.441 4.441 19 H 0.086 0.914 20 C 0.071 3.929 21 N -0.778 5.778 22 Si 0.918 3.082 23 H -0.258 1.258 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.235 4.235 27 C -0.001 4.001 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.286 0.714 46 H 0.100 0.900 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 7.971 6.796 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.272 6.272 3 C -0.007 4.007 4 H 0.088 0.912 5 C -0.231 4.231 6 C 0.004 3.996 7 N -0.828 5.828 8 C 0.036 3.964 9 C -0.219 4.219 10 C -0.222 4.222 11 S 2.787 3.213 12 O -0.947 6.947 13 O -0.978 6.978 14 C -0.878 4.878 15 C -0.039 4.039 16 C -0.196 4.196 17 C 0.137 3.863 18 C -0.469 4.469 19 H 0.104 0.896 20 C -0.150 4.150 21 N -0.402 5.402 22 Si 0.742 3.258 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.256 4.256 27 C -0.021 4.021 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.142 0.858 45 H 0.097 0.903 46 H 0.118 0.882 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.063 7.432 6.591 14.140 hybrid contribution 1.317 0.415 -0.406 1.439 sum -8.746 7.847 6.185 13.279 Atomic orbital electron populations 1.22773 0.82501 1.02577 0.99064 1.88253 1.18224 1.25986 1.94766 1.22928 0.96355 0.86108 0.95330 0.91237 1.22238 1.02342 1.01517 0.97035 1.21275 0.95261 1.03064 0.79978 1.57875 1.86359 1.25002 1.13536 1.20778 0.94202 0.88393 0.93010 1.22301 0.97362 1.00678 1.01579 1.22167 0.99547 0.98637 1.01831 1.01608 0.74927 0.71967 0.72793 1.93540 1.85078 1.65002 1.51059 1.93455 1.70495 1.85743 1.48138 1.29488 1.23239 1.31772 1.03321 1.20282 0.95969 0.94868 0.92827 1.21387 0.91520 1.06584 1.00116 1.17873 0.92793 0.85398 0.90232 1.19929 0.96630 1.16335 1.14045 0.89598 1.26084 1.00520 0.93553 0.94811 1.69802 1.38050 1.11516 1.20792 0.86081 0.80374 0.79943 0.79401 1.18126 1.19383 1.19621 1.21116 0.95381 1.12738 0.96368 1.20186 0.92986 0.92857 0.96111 0.94673 0.94616 0.89788 0.92577 0.91434 0.91765 0.89300 0.89272 0.88421 0.92315 0.91815 0.92426 0.91227 0.91894 0.92427 0.88086 0.85815 0.90295 0.88212 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.35 -5.47 8.27 -55.26 -0.46 -5.93 16 3 C 0.05 0.65 2.73 -26.73 -0.07 0.58 16 4 H 0.07 0.77 4.65 -51.93 -0.24 0.53 16 5 C -0.17 -1.72 9.53 37.16 0.35 -1.37 16 6 C 0.13 1.78 4.76 -4.04 -0.02 1.76 16 7 N -0.99 -15.74 2.69 -107.30 -0.29 -16.02 16 8 C 0.14 1.96 3.21 -67.93 -0.22 1.75 16 9 C -0.16 -1.78 7.93 37.15 0.29 -1.49 16 10 C -0.16 -2.00 9.07 37.16 0.34 -1.66 16 11 S 2.69 54.26 5.58 -107.50 -0.60 53.66 16 12 O -0.96 -20.80 14.30 -65.55 -0.94 -21.74 16 13 O -0.99 -21.84 15.86 -57.17 -0.91 -22.74 16 14 C -0.78 -17.67 6.00 -39.29 -0.24 -17.91 16 15 C -0.02 -0.45 9.49 -39.66 -0.38 -0.83 16 16 C -0.18 -4.45 8.66 -38.87 -0.34 -4.79 16 17 C 0.14 3.60 5.55 -106.82 -0.59 3.01 16 18 C -0.44 -10.98 9.06 -37.74 -0.34 -11.33 16 19 H 0.09 2.04 7.87 -52.48 -0.41 1.62 16 20 C 0.07 1.64 5.26 -17.34 -0.09 1.55 16 21 N -0.78 -18.66 10.84 55.55 0.60 -18.06 16 22 Si 0.92 17.34 29.57 -169.99 -5.03 12.31 16 23 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 24 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 C -0.24 -5.64 9.80 -38.87 -0.38 -6.02 16 27 C 0.00 -0.03 9.49 -39.66 -0.38 -0.41 16 28 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 29 H 0.04 0.40 8.09 -51.92 -0.42 -0.02 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 1.31 7.65 -51.93 -0.40 0.92 16 35 H 0.09 0.98 6.25 -51.92 -0.32 0.66 16 36 H 0.10 1.49 6.99 -51.93 -0.36 1.12 16 37 H 0.06 0.56 6.48 -51.93 -0.34 0.22 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.61 6.58 -51.93 -0.34 0.27 16 43 H 0.10 2.22 7.59 -52.49 -0.40 1.82 16 44 H 0.12 3.18 6.23 -52.49 -0.33 2.85 16 45 H 0.29 6.15 8.30 -40.82 -0.34 5.82 16 46 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 47 H 0.10 2.15 7.60 -52.49 -0.40 1.75 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -30.43 384.73 -10.07 -40.50 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.29 Total: 7.92 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: -0.96 Total: -35.71 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.31 Total: -34.08 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -2.30 Total: -50.41 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 54.26 SS G_CDS: -0.60 Total: 53.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.43 -10.07 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363971875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.155 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds