Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99675 * 2 1 4 4 C 1.50698 * 109.47473 * 270.00194 * 3 2 1 5 5 C 1.39869 * 126.04006 * 269.69726 * 4 3 2 6 6 N 1.30841 * 108.19816 * 179.81433 * 5 4 3 7 7 N 1.40080 * 108.20803 * 0.43995 * 6 5 4 8 8 C 1.46501 * 126.03842 * 179.69552 * 7 6 5 9 9 C 1.34951 * 107.92327 * 359.71467 * 7 6 5 10 10 C 1.34774 * 120.00290 * 180.02562 * 2 1 3 11 11 O 1.21714 * 120.00212 * 179.97438 * 10 2 1 12 12 C 1.46255 * 119.99895 * 359.97438 * 10 2 1 13 13 C 1.35021 * 120.00071 * 180.02562 * 12 10 2 14 14 C 1.46965 * 119.99667 * 179.97438 * 13 12 10 15 15 C 1.40021 * 120.10614 * 359.72279 * 14 13 12 16 16 C 1.37592 * 119.89975 * 179.71643 * 15 14 13 17 17 C 1.39175 * 120.10256 * 0.58496 * 16 15 14 18 18 O 1.35574 * 119.90081 * 179.69648 * 17 16 15 19 19 C 1.34781 * 116.99604 * 174.42045 * 18 17 16 20 20 H 1.07999 * 120.00423 * 5.05466 * 19 18 17 21 21 C 1.38720 * 119.99768 * 185.05528 * 19 18 17 22 22 N 1.31511 * 120.00025 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47169 * 90.00030 * 23 21 19 25 25 H 1.48501 * 109.46904 * 209.99951 * 23 21 19 26 26 H 1.48500 * 109.47165 * 329.99785 * 23 21 19 27 27 C 1.39178 * 120.20090 * 359.66602 * 17 16 15 28 28 C 1.37602 * 120.10379 * 0.05072 * 27 17 16 29 29 H 1.09004 * 109.46508 * 269.99772 * 1 2 3 30 30 H 1.08997 * 109.47077 * 29.99327 * 1 2 3 31 31 H 1.08997 * 109.47147 * 149.99514 * 1 2 3 32 32 H 1.08993 * 109.47152 * 30.01047 * 3 2 1 33 33 H 1.08999 * 109.46382 * 150.00303 * 3 2 1 34 34 H 1.08000 * 125.90050 * 359.97438 * 5 4 3 35 35 H 1.08999 * 109.47174 * 270.01998 * 8 7 6 36 36 H 1.09004 * 109.47062 * 30.02593 * 8 7 6 37 37 H 1.09003 * 109.46831 * 150.02264 * 8 7 6 38 38 H 1.08001 * 126.12323 * 179.97438 * 9 7 6 39 39 H 1.08009 * 119.99812 * 359.72383 * 12 10 2 40 40 H 1.07994 * 120.00160 * 359.97438 * 13 12 10 41 41 H 1.08001 * 120.04640 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.95316 * 180.27525 * 16 15 14 43 43 H 0.96995 * 120.00511 * 179.97438 * 22 21 19 44 44 H 1.08000 * 119.94985 * 180.02562 * 27 17 16 45 45 H 1.07994 * 120.05258 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7040 -1.4208 5 6 3.5681 1.3810 -2.1946 6 7 3.4256 1.9360 -3.3709 7 7 2.2140 2.6391 -3.3793 8 6 1.6727 3.4102 -4.5012 9 6 1.6336 2.4808 -2.1712 10 6 2.1390 -1.1671 -0.0005 11 8 3.3561 -1.1671 -0.0010 12 6 1.4077 -2.4338 -0.0005 13 6 2.0828 -3.6031 -0.0005 14 6 1.3480 -4.8758 0.0000 15 6 -0.0522 -4.8783 0.0065 16 6 -0.7360 -6.0723 0.0011 17 6 -0.0380 -7.2764 0.0015 18 8 -0.7158 -8.4505 0.0024 19 6 0.0134 -9.5781 -0.1139 20 1 1.0920 -9.5254 -0.1201 21 6 -0.6217 -10.8063 -0.2256 22 7 -1.9352 -10.8705 -0.2175 23 14 0.3888 -12.3691 -0.3861 24 1 0.6707 -12.9173 0.9649 25 1 -0.3702 -13.3702 -1.1780 26 1 1.6692 -12.0623 -1.0729 27 6 1.3538 -7.2789 0.0005 28 6 2.0461 -6.0897 0.0000 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 1.6085 2.0283 0.5140 33 1 3.1499 1.1384 0.5138 34 1 4.4043 0.7758 -1.8771 35 1 2.0231 4.4403 -4.4366 36 1 2.0086 2.9702 -5.4402 37 1 0.5835 3.3938 -4.4613 38 1 0.6883 2.8997 -1.8592 39 1 0.3276 -2.4338 0.0044 40 1 3.1628 -3.6031 -0.0009 41 1 -0.5947 -3.9445 0.0114 42 1 -1.8159 -6.0753 0.0015 43 1 -2.3793 -11.7292 -0.2960 44 1 1.8913 -8.2156 0.0004 45 1 3.1260 -6.0926 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024474118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 47.853902 kcal Electronic energy + Delta-G solvation = -27351.479192 eV Core-core repulsion = 23336.641948 eV Total energy + Delta-G solvation = -4014.837244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17379 -40.90395 -40.52422 -38.49723 -36.61435 -34.77341 -34.24587 -33.91617 -32.01479 -31.91711 -29.82570 -28.77168 -27.55622 -27.28789 -26.23274 -24.20482 -23.57695 -22.00704 -21.95638 -21.04833 -20.12233 -19.32409 -18.80050 -18.21344 -17.82844 -17.06386 -16.48435 -16.37066 -16.16301 -16.11465 -15.92069 -15.60628 -15.35744 -15.15486 -14.68822 -14.48237 -14.30516 -14.09316 -13.98509 -13.74635 -13.59697 -13.46489 -13.37038 -13.29553 -13.23774 -12.86369 -12.70474 -12.59231 -12.49546 -12.16421 -12.12137 -11.54640 -11.21025 -11.09481 -10.85235 -10.55038 -10.38130 -9.88724 -9.62412 -9.35907 -8.65849 -8.51785 -6.17821 -0.21754 0.58922 0.94073 1.16275 1.35882 1.46000 1.52874 1.63155 1.71846 2.15523 2.44560 2.47719 2.87335 3.18628 3.42925 3.63521 3.74423 3.94627 3.98733 4.08811 4.20422 4.29940 4.32228 4.35021 4.44880 4.47396 4.48446 4.54870 4.66925 4.70355 4.80333 4.84200 4.95225 4.98292 5.02980 5.06912 5.12166 5.20507 5.30478 5.35704 5.57687 5.63193 5.64153 5.74122 5.82968 5.97815 6.11048 6.17584 6.52322 6.72217 6.92612 7.32388 7.69731 8.70200 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.001703 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.709495 B =16435.860508 C =16476.621555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.196 3.804 4 C -0.272 4.272 5 C 0.049 3.951 6 N -0.345 5.345 7 N -0.381 5.381 8 C 0.092 3.908 9 C 0.082 3.918 10 C 0.545 3.455 11 O -0.590 6.590 12 C -0.245 4.245 13 C 0.010 3.990 14 C -0.169 4.169 15 C -0.038 4.038 16 C -0.205 4.205 17 C 0.129 3.871 18 O -0.219 6.219 19 C -0.417 4.417 20 H 0.105 0.895 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.249 4.249 28 C -0.043 4.043 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.168 0.832 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.218 0.782 39 H 0.151 0.849 40 H 0.121 0.879 41 H 0.160 0.840 42 H 0.125 0.875 43 H 0.275 0.725 44 H 0.124 0.876 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 29.557 -2.466 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.073 3.927 4 C -0.284 4.284 5 C -0.137 4.137 6 N -0.167 5.167 7 N -0.163 5.163 8 C -0.047 4.047 9 C -0.066 4.066 10 C 0.338 3.662 11 O -0.474 6.474 12 C -0.266 4.266 13 C -0.010 4.010 14 C -0.170 4.170 15 C -0.055 4.055 16 C -0.224 4.224 17 C 0.077 3.923 18 O -0.124 6.124 19 C -0.493 4.493 20 H 0.122 0.878 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.268 4.268 28 C -0.061 4.061 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.235 0.765 39 H 0.169 0.831 40 H 0.139 0.861 41 H 0.177 0.823 42 H 0.143 0.857 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.114 29.653 -3.761 30.052 hybrid contribution 0.131 -1.375 0.567 1.493 sum 3.245 28.278 -3.195 28.642 Atomic orbital electron populations 1.22091 0.77311 1.04516 1.03264 1.47895 1.08275 1.05131 1.72453 1.19650 0.97822 0.84479 0.90744 1.20589 0.97667 1.09700 1.00469 1.23902 0.99901 0.98605 0.91242 1.77328 1.02475 1.14767 1.22161 1.48887 1.15349 1.39346 1.12670 1.22205 1.00847 0.95194 0.86498 1.22970 0.99980 0.98561 0.85076 1.18551 0.86805 0.85321 0.75566 1.90742 1.15482 1.88294 1.52838 1.22928 1.01310 0.91081 1.11260 1.22170 0.99345 0.90573 0.88906 1.18792 0.93342 0.92550 1.12270 1.21258 0.93024 0.97044 0.94202 1.20421 1.00196 0.90021 1.11789 1.20182 0.92002 0.87404 0.92712 1.83884 1.36632 1.12253 1.79668 1.21886 0.92036 0.82584 1.52762 0.87809 1.26594 0.97398 1.02135 0.95563 1.70142 1.09706 1.27527 1.47622 0.84594 0.77611 0.74890 0.79210 1.18731 1.19520 1.17737 1.21197 0.93426 0.99645 1.12520 1.21307 1.00115 0.90685 0.93947 0.90875 0.88748 0.90760 0.86380 0.91252 0.81523 0.89321 0.89960 0.86248 0.76505 0.83122 0.86080 0.82296 0.85750 0.91595 0.85822 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.15 127.77 1.30 1.95 16 2 N -0.61 -10.68 2.86 -856.39 -2.45 -13.12 16 3 C 0.20 3.03 5.89 85.63 0.50 3.53 16 4 C -0.27 -4.85 5.68 -20.15 -0.11 -4.97 16 5 C 0.05 1.20 11.96 85.24 1.02 2.22 16 6 N -0.34 -8.60 12.58 -57.02 -0.72 -9.32 16 7 N -0.38 -6.13 4.01 -369.55 -1.48 -7.62 16 8 C 0.09 0.62 11.47 127.77 1.47 2.09 16 9 C 0.08 1.00 11.40 83.54 0.95 1.95 16 10 C 0.55 14.04 7.60 86.33 0.66 14.70 16 11 O -0.59 -19.60 15.81 -4.39 -0.07 -19.67 16 12 C -0.25 -5.92 8.60 23.61 0.20 -5.72 16 13 C 0.01 0.28 9.45 23.82 0.23 0.51 16 14 C -0.17 -5.40 5.87 -20.12 -0.12 -5.52 16 15 C -0.04 -1.18 9.40 22.55 0.21 -0.97 16 16 C -0.21 -8.18 9.97 22.34 0.22 -7.96 16 17 C 0.13 6.19 6.66 22.72 0.15 6.34 16 18 O -0.22 -12.74 9.74 -20.30 -0.20 -12.94 16 19 C -0.42 -23.60 9.48 67.94 0.64 -22.95 16 20 H 0.10 5.39 5.18 -2.91 -0.02 5.38 16 21 C -0.02 -1.00 5.49 84.86 0.47 -0.54 16 22 N -0.91 -54.41 13.67 21.62 0.30 -54.12 16 23 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 26 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 27 C -0.25 -10.60 9.14 22.35 0.20 -10.40 16 28 C -0.04 -1.49 9.79 22.55 0.22 -1.27 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.38 8.07 -2.39 -0.02 0.36 16 31 H 0.07 0.74 6.10 -2.39 -0.01 0.72 16 32 H 0.12 0.90 8.07 -2.39 -0.02 0.88 16 33 H 0.07 1.39 7.42 -2.39 -0.02 1.37 16 34 H 0.17 4.38 8.06 -2.91 -0.02 4.35 16 35 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.22 0.41 8.06 -2.91 -0.02 0.38 16 39 H 0.15 2.79 4.22 -2.91 -0.01 2.78 16 40 H 0.12 3.52 7.52 -2.91 -0.02 3.50 16 41 H 0.16 3.60 6.16 -2.91 -0.02 3.58 16 42 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.12 5.34 5.62 -2.91 -0.02 5.32 16 45 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -82.04 389.01 6.64 -75.40 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 1.02 Total: 24.58 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 8.21 Total: -26.99 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -4.35 Total: -84.17 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.27 Total: -32.61 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -82.04 6.64 -75.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024474118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.251 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds