Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00177 * 2 1 4 4 O 1.21281 * 120.00061 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00129 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47288 * 179.97438 * 5 3 2 7 7 C 1.34774 * 120.00322 * 179.97438 * 6 5 3 8 8 O 1.21783 * 119.99554 * 0.02562 * 7 6 5 9 9 C 1.41493 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.35452 * 120.00190 * 179.97438 * 9 7 6 11 11 C 1.46381 * 120.00064 * 180.02562 * 10 9 7 12 12 C 1.36664 * 126.78113 * 0.02990 * 11 10 9 13 13 N 1.35623 * 109.69336 * 179.46382 * 12 11 10 14 14 C 1.46495 * 124.78393 * 179.91447 * 13 12 11 15 15 C 1.50705 * 109.46952 * 265.81272 * 14 13 12 16 16 H 1.08000 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99981 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00083 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47115 * 89.99625 * 19 17 15 21 21 H 1.48502 * 109.47227 * 209.99928 * 19 17 15 22 22 H 1.48507 * 109.46983 * 330.00101 * 19 17 15 23 23 C 1.38000 * 110.43164 * 0.62714 * 13 12 11 24 24 C 1.39125 * 133.12635 * 179.27057 * 23 13 12 25 25 C 1.37772 * 119.92722 * 179.97438 * 24 23 13 26 26 C 1.38741 * 120.63495 * 0.02612 * 25 24 23 27 27 C 1.37779 * 120.29457 * 359.97438 * 26 25 24 28 28 C 1.39246 * 119.67602 * 0.25914 * 27 26 25 29 29 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47236 * 300.00754 * 1 2 3 31 31 H 1.09004 * 109.46665 * 60.00269 * 1 2 3 32 32 H 0.97000 * 120.00045 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47348 * 59.99739 * 5 3 2 34 34 H 1.09004 * 109.46682 * 299.99710 * 5 3 2 35 35 H 0.97004 * 120.00100 * 359.97438 * 6 5 3 36 36 H 1.08002 * 119.99836 * 0.02562 * 9 7 6 37 37 H 1.08002 * 119.99973 * 0.02562 * 10 9 7 38 38 H 1.07992 * 125.15548 * 359.97438 * 12 11 10 39 39 H 1.08998 * 109.46787 * 25.80840 * 14 13 12 40 40 H 1.08991 * 109.47656 * 145.81141 * 14 13 12 41 41 H 0.97001 * 120.00190 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.03435 * 0.02562 * 24 23 13 43 43 H 1.08005 * 119.68182 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.85479 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.15875 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1343 2.5483 -0.0011 7 6 5.4593 2.7946 -0.0011 8 8 6.2507 1.8689 -0.0012 9 6 5.9311 4.1286 -0.0022 10 6 7.2628 4.3760 -0.0017 11 6 7.7508 5.7561 -0.0022 12 6 6.9916 6.8925 -0.0025 13 7 7.7994 7.9818 0.0090 14 6 7.3308 9.3698 0.0103 15 6 7.2811 9.8845 -1.4052 16 1 7.5701 9.2421 -2.2239 17 6 6.8667 11.1756 -1.6552 18 7 6.8238 11.6249 -2.8904 19 14 6.3675 12.2870 -0.2391 20 1 7.5572 13.0281 0.2516 21 1 5.3406 13.2527 -0.7061 22 1 5.8081 11.4636 0.8629 23 6 9.1251 7.5985 0.0033 24 6 10.3208 8.3098 -0.0028 25 6 11.5220 7.6351 -0.0072 26 6 11.5537 6.2480 -0.0062 27 6 10.3803 5.5260 -0.0002 28 6 9.1591 6.1951 -0.0007 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.9500 -0.8400 0.0004 33 1 4.0089 0.6535 -0.8907 34 1 4.0095 0.6531 0.8892 35 1 3.5040 3.2856 -0.0014 36 1 5.2293 4.9495 -0.0025 37 1 7.9646 3.5551 -0.0009 38 1 5.9120 6.9191 -0.0029 39 1 6.3341 9.4163 0.4490 40 1 8.0147 9.9837 0.5963 41 1 6.5326 12.5333 -3.0662 42 1 10.3073 9.3898 -0.0033 43 1 12.4478 8.1912 -0.0124 44 1 12.5024 5.7320 -0.0101 45 1 10.4075 4.4463 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025600319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 3.460848 kcal Electronic energy + Delta-G solvation = -27470.628490 eV Core-core repulsion = 23453.866219 eV Total energy + Delta-G solvation = -4016.762271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91150 -40.37617 -39.23586 -36.70186 -35.18286 -34.60537 -34.21873 -32.96097 -31.29950 -29.94713 -29.40408 -28.41869 -27.26256 -25.97609 -23.64914 -22.79586 -21.92920 -21.01851 -20.68687 -20.22955 -18.76838 -17.84177 -17.25748 -16.97778 -16.63676 -16.22841 -16.02447 -15.81722 -15.24193 -15.10761 -14.85064 -14.63178 -14.13493 -13.93828 -13.60084 -13.58066 -13.43082 -13.36890 -13.09445 -12.73685 -12.63558 -12.59866 -12.45451 -12.01756 -11.74318 -11.47619 -11.14991 -11.03283 -10.85427 -10.54779 -10.42415 -10.39725 -9.97361 -9.87272 -9.65643 -9.60588 -9.19955 -8.91015 -8.71683 -7.77154 -6.90558 -6.38269 -4.43989 1.04230 1.69494 2.12713 2.15414 2.56852 3.05609 3.11786 3.14244 3.15579 3.41719 3.50538 3.81443 4.10197 4.25446 4.36475 4.77337 4.89183 4.97531 5.00051 5.03683 5.10157 5.13274 5.20608 5.35193 5.36270 5.45669 5.55149 5.64941 5.80413 5.86338 5.98062 6.06247 6.15436 6.25518 6.28284 6.30737 6.34753 6.56406 6.73012 6.91606 6.93501 6.98572 7.13059 7.13851 7.24948 7.57773 7.69906 7.71471 7.74102 8.16235 8.35125 8.66038 9.16187 10.73737 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.002438 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.163301 B =11482.523204 C =14020.411678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.507 3.493 4 O -0.533 6.533 5 C 0.103 3.897 6 N -0.726 5.726 7 C 0.567 3.433 8 O -0.566 6.566 9 C -0.294 4.294 10 C 0.085 3.915 11 C -0.221 4.221 12 C 0.132 3.868 13 N -0.434 5.434 14 C 0.202 3.798 15 C -0.551 4.551 16 H 0.083 0.917 17 C 0.081 3.919 18 N -0.881 5.881 19 Si 0.873 3.127 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.097 3.903 24 C -0.103 4.103 25 C -0.118 4.118 26 C -0.144 4.144 27 C -0.087 4.087 28 C -0.083 4.083 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.405 0.595 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.412 0.588 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.171 0.829 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.270 0.730 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 -19.837 7.936 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.293 3.707 4 O -0.409 6.409 5 C -0.024 4.024 6 N -0.381 5.381 7 C 0.361 3.639 8 O -0.448 6.448 9 C -0.316 4.316 10 C 0.064 3.936 11 C -0.229 4.229 12 C -0.005 4.005 13 N -0.108 5.108 14 C 0.083 3.917 15 C -0.589 4.589 16 H 0.101 0.899 17 C -0.124 4.124 18 N -0.517 5.517 19 Si 0.699 3.301 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.008 4.008 24 C -0.123 4.123 25 C -0.137 4.137 26 C -0.163 4.163 27 C -0.105 4.105 28 C -0.087 4.087 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.239 0.761 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.249 0.751 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.188 0.812 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.074 -19.142 7.819 21.291 hybrid contribution -0.638 0.769 0.428 1.086 sum -5.712 -18.374 8.246 20.934 Atomic orbital electron populations 1.21575 0.79077 1.02445 1.02625 1.45694 1.08070 1.08641 1.76160 1.20723 0.90224 0.83994 0.75751 1.90730 1.70055 1.31179 1.48903 1.20944 0.89929 0.86880 1.04695 1.45642 1.07980 1.07303 1.77201 1.17009 0.81155 0.90178 0.75589 1.90792 1.55189 1.46869 1.51925 1.21347 0.96805 0.95434 1.18043 1.21592 0.94677 0.93669 0.83640 1.18864 0.91114 0.91735 1.21146 1.22260 0.96739 0.85071 0.96401 1.44321 1.03739 1.07844 1.54861 1.20203 0.96117 0.75471 0.99904 1.21169 1.47687 0.99338 0.90656 0.89929 1.24833 0.94373 0.97427 0.95774 1.69867 1.45501 1.17431 1.18935 0.86902 0.79327 0.81299 0.82568 1.19615 1.20415 1.18894 1.18265 0.85199 0.93074 1.04310 1.20191 0.89632 0.99757 1.02724 1.20706 0.96608 0.94232 1.02149 1.20796 0.97361 0.93977 1.04189 1.20330 0.90479 0.99045 1.00679 1.18996 0.92623 0.92033 1.05064 0.90428 0.92024 0.91979 0.76072 0.88478 0.88512 0.75058 0.86057 0.85338 0.81158 0.93346 0.94077 0.91959 0.85879 0.86206 0.86497 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.70 59.85 0.64 1.08 16 2 N -0.73 -4.19 5.71 -67.08 -0.38 -4.57 16 3 C 0.51 4.66 7.90 -10.99 -0.09 4.58 16 4 O -0.53 -6.97 15.67 5.56 0.09 -6.88 16 5 C 0.10 0.93 6.15 -5.19 -0.03 0.90 16 6 N -0.73 -8.55 5.52 -64.45 -0.36 -8.91 16 7 C 0.57 8.11 7.56 -15.02 -0.11 8.00 16 8 O -0.57 -9.53 16.11 5.11 0.08 -9.45 16 9 C -0.29 -4.15 9.32 -39.34 -0.37 -4.51 16 10 C 0.09 1.30 9.68 -37.30 -0.36 0.94 16 11 C -0.22 -3.79 6.24 -103.41 -0.65 -4.44 16 12 C 0.13 2.34 10.66 -16.44 -0.18 2.16 16 13 N -0.43 -8.76 2.73 -115.37 -0.32 -9.08 16 14 C 0.20 4.41 4.77 -5.19 -0.02 4.38 16 15 C -0.55 -14.47 9.94 -34.44 -0.34 -14.81 16 16 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 18 N -0.88 -25.33 13.96 55.43 0.77 -24.56 16 19 Si 0.87 19.32 27.47 -169.99 -4.67 14.66 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 23 C 0.10 1.91 6.79 -83.95 -0.57 1.34 16 24 C -0.10 -1.87 9.97 -39.42 -0.39 -2.27 16 25 C -0.12 -1.80 10.01 -39.57 -0.40 -2.20 16 26 C -0.14 -2.09 10.03 -39.56 -0.40 -2.49 16 27 C -0.09 -1.36 10.09 -39.37 -0.40 -1.76 16 28 C -0.08 -1.51 6.36 -104.93 -0.67 -2.18 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 1.04 8.83 -40.82 -0.36 0.68 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.41 4.74 7.39 -40.82 -0.30 4.44 16 36 H 0.12 1.52 6.88 -52.49 -0.36 1.16 16 37 H 0.13 1.92 7.45 -52.49 -0.39 1.53 16 38 H 0.17 2.53 7.19 -52.49 -0.38 2.16 16 39 H 0.05 1.00 7.17 -51.93 -0.37 0.63 16 40 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -33.95 391.33 -9.26 -43.21 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.95 Total: 8.89 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.42 Total: -9.21 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.28 Total: -47.11 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.17 Total: -16.33 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.67 Total: 14.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.95 -9.26 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025600319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.671 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds