Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00177 * 2 1 4 4 O 1.21281 * 120.00061 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00129 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47288 * 179.97438 * 5 3 2 7 7 C 1.34774 * 120.00322 * 179.97438 * 6 5 3 8 8 O 1.21783 * 119.99554 * 0.02562 * 7 6 5 9 9 C 1.41493 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.35452 * 120.00190 * 179.97438 * 9 7 6 11 11 C 1.46381 * 120.00064 * 180.02562 * 10 9 7 12 12 C 1.36664 * 126.78113 * 0.02990 * 11 10 9 13 13 N 1.35623 * 109.69336 * 179.46382 * 12 11 10 14 14 C 1.46495 * 124.78393 * 179.91447 * 13 12 11 15 15 C 1.50705 * 109.46952 * 265.81272 * 14 13 12 16 16 H 1.08000 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99981 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00083 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47115 * 89.99625 * 19 17 15 21 21 H 1.48502 * 109.47227 * 209.99928 * 19 17 15 22 22 H 1.48507 * 109.46983 * 330.00101 * 19 17 15 23 23 C 1.38000 * 110.43164 * 0.62714 * 13 12 11 24 24 C 1.39125 * 133.12635 * 179.27057 * 23 13 12 25 25 C 1.37772 * 119.92722 * 179.97438 * 24 23 13 26 26 C 1.38741 * 120.63495 * 0.02612 * 25 24 23 27 27 C 1.37779 * 120.29457 * 359.97438 * 26 25 24 28 28 C 1.39246 * 119.67602 * 0.25914 * 27 26 25 29 29 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47236 * 300.00754 * 1 2 3 31 31 H 1.09004 * 109.46665 * 60.00269 * 1 2 3 32 32 H 0.97000 * 120.00045 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47348 * 59.99739 * 5 3 2 34 34 H 1.09004 * 109.46682 * 299.99710 * 5 3 2 35 35 H 0.97004 * 120.00100 * 359.97438 * 6 5 3 36 36 H 1.08002 * 119.99836 * 0.02562 * 9 7 6 37 37 H 1.08002 * 119.99973 * 0.02562 * 10 9 7 38 38 H 1.07992 * 125.15548 * 359.97438 * 12 11 10 39 39 H 1.08998 * 109.46787 * 25.80840 * 14 13 12 40 40 H 1.08991 * 109.47656 * 145.81141 * 14 13 12 41 41 H 0.97001 * 120.00190 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.03435 * 0.02562 * 24 23 13 43 43 H 1.08005 * 119.68182 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.85479 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.15875 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1343 2.5483 -0.0011 7 6 5.4593 2.7946 -0.0011 8 8 6.2507 1.8689 -0.0012 9 6 5.9311 4.1286 -0.0022 10 6 7.2628 4.3760 -0.0017 11 6 7.7508 5.7561 -0.0022 12 6 6.9916 6.8925 -0.0025 13 7 7.7994 7.9818 0.0090 14 6 7.3308 9.3698 0.0103 15 6 7.2811 9.8845 -1.4052 16 1 7.5701 9.2421 -2.2239 17 6 6.8667 11.1756 -1.6552 18 7 6.8238 11.6249 -2.8904 19 14 6.3675 12.2870 -0.2391 20 1 7.5572 13.0281 0.2516 21 1 5.3406 13.2527 -0.7061 22 1 5.8081 11.4636 0.8629 23 6 9.1251 7.5985 0.0033 24 6 10.3208 8.3098 -0.0028 25 6 11.5220 7.6351 -0.0072 26 6 11.5537 6.2480 -0.0062 27 6 10.3803 5.5260 -0.0002 28 6 9.1591 6.1951 -0.0007 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.9500 -0.8400 0.0004 33 1 4.0089 0.6535 -0.8907 34 1 4.0095 0.6531 0.8892 35 1 3.5040 3.2856 -0.0014 36 1 5.2293 4.9495 -0.0025 37 1 7.9646 3.5551 -0.0009 38 1 5.9120 6.9191 -0.0029 39 1 6.3341 9.4163 0.4490 40 1 8.0147 9.9837 0.5963 41 1 6.5326 12.5333 -3.0662 42 1 10.3073 9.3898 -0.0033 43 1 12.4478 8.1912 -0.0124 44 1 12.5024 5.7320 -0.0101 45 1 10.4075 4.4463 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025600319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = -19.809549 kcal Electronic energy + Delta-G solvation = -27471.637570 eV Core-core repulsion = 23453.866219 eV Total energy + Delta-G solvation = -4017.771351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25458 -41.24663 -40.23124 -37.99753 -35.97644 -35.78021 -35.36428 -34.73223 -32.71298 -31.37922 -30.26649 -29.78589 -28.56868 -26.79752 -25.10416 -24.12071 -23.24801 -22.09477 -21.69737 -21.36399 -19.92610 -19.26013 -18.85559 -18.08876 -17.55052 -17.27674 -16.99709 -16.98734 -16.38682 -16.32461 -16.09801 -15.77236 -15.46310 -15.10760 -14.93510 -14.88807 -14.50353 -14.29903 -14.27132 -14.22181 -13.85667 -13.47753 -13.40167 -13.30919 -13.09719 -12.75314 -12.64064 -12.48436 -12.30905 -12.04023 -11.85712 -11.70384 -11.21519 -11.20353 -11.05403 -10.93363 -10.31055 -10.16195 -9.92884 -9.10481 -8.43800 -8.23067 -6.55163 -0.18859 0.42704 0.83860 1.32648 1.33257 1.43180 1.43969 1.87018 1.89260 2.08736 2.22870 2.57306 2.61245 2.89215 3.07543 3.65595 3.75855 3.81574 3.91601 4.14751 4.25757 4.33670 4.34201 4.35447 4.40047 4.46658 4.55283 4.60835 4.62435 4.64660 4.72440 4.85077 4.95461 4.95485 5.11862 5.20306 5.29493 5.34487 5.39046 5.51177 5.67390 5.73460 5.83895 5.95365 5.99322 6.37549 6.40832 6.41233 6.52298 6.54490 7.09984 7.10016 7.25371 8.72836 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.002438 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.163301 B =11482.523204 C =14020.411678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.508 3.492 4 O -0.577 6.577 5 C 0.101 3.899 6 N -0.719 5.719 7 C 0.565 3.435 8 O -0.591 6.591 9 C -0.279 4.279 10 C 0.074 3.926 11 C -0.213 4.213 12 C 0.109 3.891 13 N -0.453 5.453 14 C 0.212 3.788 15 C -0.553 4.553 16 H 0.027 0.973 17 C 0.022 3.978 18 N -0.936 5.936 19 Si 0.948 3.052 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.237 1.237 23 C 0.065 3.935 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.138 4.138 27 C -0.090 4.090 28 C -0.105 4.105 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.423 0.577 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.414 0.586 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.192 0.808 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 -21.833 9.846 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.294 3.706 4 O -0.457 6.457 5 C -0.026 4.026 6 N -0.373 5.373 7 C 0.359 3.641 8 O -0.476 6.476 9 C -0.300 4.300 10 C 0.053 3.947 11 C -0.220 4.220 12 C -0.025 4.025 13 N -0.129 5.129 14 C 0.092 3.908 15 C -0.591 4.591 16 H 0.045 0.955 17 C -0.179 4.179 18 N -0.574 5.574 19 Si 0.770 3.230 20 H -0.187 1.187 21 H -0.204 1.204 22 H -0.160 1.160 23 C -0.040 4.040 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.157 4.157 27 C -0.109 4.109 28 C -0.109 4.109 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.260 0.740 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.252 0.748 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.209 0.791 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.168 0.832 44 H 0.174 0.826 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.150 -21.236 9.742 23.925 hybrid contribution -0.594 1.147 -0.253 1.316 sum -5.745 -20.089 9.489 22.948 Atomic orbital electron populations 1.21714 0.78328 1.04507 1.01550 1.45620 1.08589 1.08453 1.74179 1.20754 0.90210 0.84259 0.75393 1.90716 1.70744 1.32865 1.51399 1.21139 0.89955 0.85451 1.06029 1.45620 1.07175 1.08818 1.75693 1.17002 0.81763 0.89821 0.75552 1.90780 1.55979 1.47489 1.53313 1.21560 0.96765 0.96055 1.15669 1.21527 0.95240 0.92716 0.85182 1.19047 0.90875 0.92318 1.19802 1.22669 0.97747 0.84752 0.97348 1.44217 1.04413 1.07445 1.56815 1.19932 0.97168 0.76880 0.96821 1.21291 1.47078 0.98922 0.91764 0.95454 1.25835 0.94138 0.99107 0.98771 1.70035 1.47380 1.18173 1.21821 0.85711 0.79141 0.78936 0.79231 1.18736 1.20388 1.15996 1.18697 0.85408 0.94291 1.05582 1.20369 0.90602 0.99514 1.05072 1.21116 0.96617 0.95081 0.99942 1.21254 0.98597 0.93628 1.02222 1.20732 0.90005 1.00435 0.99689 1.19363 0.93957 0.91668 1.05941 0.86803 0.93035 0.93167 0.73999 0.87222 0.86962 0.74836 0.84606 0.85036 0.79129 0.91580 0.93344 0.91795 0.87069 0.83249 0.82614 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.05 16 2 N -0.72 -6.69 5.71 -484.53 -2.77 -9.45 16 3 C 0.51 8.64 7.90 87.66 0.69 9.34 16 4 O -0.58 -14.84 15.67 -3.03 -0.05 -14.89 16 5 C 0.10 1.65 6.15 85.63 0.53 2.17 16 6 N -0.72 -16.00 5.52 -475.99 -2.63 -18.63 16 7 C 0.57 15.46 7.56 85.04 0.64 16.10 16 8 O -0.59 -19.15 16.11 -4.61 -0.07 -19.23 16 9 C -0.28 -7.57 9.32 22.43 0.21 -7.36 16 10 C 0.07 2.21 9.68 23.75 0.23 2.44 16 11 C -0.21 -7.31 6.24 -19.08 -0.12 -7.43 16 12 C 0.11 3.91 10.66 83.74 0.89 4.80 16 13 N -0.45 -18.81 2.73 -518.93 -1.42 -20.23 16 14 C 0.21 9.37 4.77 85.64 0.41 9.78 16 15 C -0.55 -30.33 9.94 25.60 0.25 -30.07 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.02 1.18 5.47 84.66 0.46 1.64 16 18 N -0.94 -56.06 13.96 21.45 0.30 -55.76 16 19 Si 0.95 39.92 27.47 68.60 1.88 41.81 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.24 -8.86 6.54 99.48 0.65 -8.21 16 23 C 0.07 2.63 6.79 38.91 0.26 2.90 16 24 C -0.14 -5.02 9.97 22.37 0.22 -4.80 16 25 C -0.11 -3.18 10.01 22.28 0.22 -2.96 16 26 C -0.14 -3.66 10.03 22.28 0.22 -3.44 16 27 C -0.09 -2.69 10.09 22.40 0.23 -2.47 16 28 C -0.11 -3.83 6.36 -20.07 -0.13 -3.95 16 29 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.42 0.98 8.83 -92.71 -0.82 0.16 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.41 9.13 7.39 -92.70 -0.69 8.45 16 36 H 0.14 3.24 6.88 -2.91 -0.02 3.22 16 37 H 0.13 3.82 7.45 -2.91 -0.02 3.80 16 38 H 0.19 5.66 7.19 -2.91 -0.02 5.64 16 39 H 0.07 2.67 7.17 -2.39 -0.02 2.65 16 40 H 0.05 2.05 7.57 -2.39 -0.02 2.04 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 44 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -77.96 391.33 1.33 -76.63 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.52 Total: 31.01 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 6.60 Total: -11.26 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -6.51 Total: -104.07 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.12 Total: -34.12 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.88 Total: 41.81 kcal Total: -77.96 1.33 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025600319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.820 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds