Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46927 * 59.99717 * 9 7 5 11 11 H 1.48496 * 109.47287 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47040 * 299.99940 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 N 1.28388 * 119.10857 * 269.99782 * 16 15 13 18 18 C 1.31213 * 122.29782 * 179.97438 * 17 16 15 19 19 C 1.48365 * 119.87307 * 180.02562 * 18 17 16 20 20 C 1.39352 * 120.12113 * 179.72573 * 19 18 17 21 21 C 1.38015 * 119.87471 * 179.67476 * 20 19 18 22 22 C 1.38329 * 120.12202 * 0.62244 * 21 20 19 23 23 C 1.38328 * 120.24303 * 359.67504 * 22 21 20 24 24 C 1.38009 * 120.12527 * 359.97438 * 23 22 21 25 25 C 1.41444 * 120.25500 * 359.97438 * 18 17 16 26 26 C 1.36364 * 118.24501 * 0.02562 * 25 18 17 27 27 C 1.34616 * 119.11309 * 89.72635 * 16 15 13 28 28 O 1.22050 * 120.24428 * 0.02562 * 27 16 15 29 29 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 31 31 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 35 35 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 36 36 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 38 38 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 39 39 H 1.08002 * 120.06759 * 359.97438 * 20 19 18 40 40 H 1.07996 * 119.94293 * 180.31713 * 21 20 19 41 41 H 1.07996 * 119.87620 * 179.69792 * 22 21 20 42 42 H 1.08002 * 119.93636 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.06149 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.88130 * 180.02562 * 25 18 17 45 45 H 1.08003 * 121.04826 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.1403 0.6395 -3.5952 11 1 6.1611 2.7961 -4.7030 12 1 6.8414 2.6186 -2.3819 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 7 3.5149 2.2081 4.0551 18 6 3.8721 2.9853 5.0501 19 6 5.2686 2.9512 5.5498 20 6 5.6550 3.7785 6.6025 21 6 6.9538 3.7379 7.0678 22 6 7.8745 2.8873 6.4828 23 6 7.4979 2.0684 5.4335 24 6 6.2001 2.0956 4.9649 25 6 2.9312 3.8562 5.6474 26 6 1.6570 3.8609 5.1616 27 6 1.3566 2.9966 4.0854 28 8 0.2309 2.9694 3.6146 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 3.6759 3.5175 -4.4431 37 1 0.9499 1.0100 2.5343 38 1 2.6281 0.4167 2.5258 39 1 4.9384 4.4468 7.0567 40 1 7.2531 4.3748 7.8870 41 1 8.8909 2.8622 6.8468 42 1 8.2207 1.4059 4.9806 43 1 5.9071 1.4555 4.1458 44 1 3.2143 4.5005 6.4666 45 1 0.9021 4.5075 5.5841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052892908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 29.593729 kcal Electronic energy + Delta-G solvation = -29257.686602 eV Core-core repulsion = 25242.057538 eV Total energy + Delta-G solvation = -4015.629064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08846 -39.43516 -38.91379 -37.60980 -35.51895 -34.98332 -32.84112 -32.24354 -31.24722 -30.62335 -30.13058 -28.56478 -26.73902 -24.99098 -24.34106 -23.07623 -22.75488 -22.18631 -21.86472 -18.95043 -18.27400 -17.89716 -17.14480 -16.68488 -16.62855 -16.42234 -15.66905 -15.46841 -14.95361 -14.87415 -14.58494 -14.44443 -14.07032 -13.68924 -13.58704 -13.49846 -13.45587 -13.19372 -13.03931 -12.71037 -12.54511 -12.05935 -11.94369 -11.69531 -11.62119 -11.36663 -11.22145 -11.08971 -10.96664 -10.80861 -10.75880 -10.55714 -10.15967 -9.70834 -9.68585 -9.42450 -9.11957 -9.07844 -8.44634 -8.05671 -7.75900 -6.05619 -4.10751 0.41341 0.79191 1.24156 1.95097 2.11683 3.22118 3.30386 3.30945 3.35507 3.39063 3.74551 3.87380 3.90197 4.34362 4.43161 4.48517 4.65110 4.79843 4.84843 4.86649 4.96996 5.08895 5.18484 5.25558 5.28815 5.31848 5.37582 5.48867 5.54902 5.59055 5.72771 5.74797 5.77268 5.91097 5.94867 6.01291 6.20114 6.27118 6.36295 6.39270 6.48225 6.77067 6.99101 7.40663 7.46891 7.61421 7.89767 8.14719 8.20410 8.28791 8.82142 8.97393 9.54029 11.02597 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.003658 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.648669 B = 7651.711265 C = 9794.047524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.499 3.501 14 O -0.529 6.529 15 C 0.089 3.911 16 N -0.317 5.317 17 N -0.196 5.196 18 C 0.089 3.911 19 C -0.023 4.023 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.085 4.085 25 C -0.061 4.061 26 C -0.183 4.183 27 C 0.483 3.517 28 O -0.528 6.528 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.515 -4.545 22.638 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.283 3.717 14 O -0.406 6.406 15 C -0.035 4.035 16 N -0.135 5.135 17 N -0.020 5.020 18 C -0.079 4.079 19 C -0.025 4.025 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.105 4.105 25 C -0.084 4.084 26 C -0.213 4.213 27 C 0.281 3.719 28 O -0.406 6.406 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.255 -4.514 21.483 22.068 hybrid contribution 0.573 0.483 -0.077 0.754 sum 2.829 -4.031 21.406 21.965 Atomic orbital electron populations 1.22249 0.96436 1.01648 1.02735 1.21508 0.93821 0.83887 1.02929 1.48215 1.63366 1.13362 1.07311 1.19307 0.96424 0.93644 0.77678 1.21378 0.96809 1.32140 1.06370 0.92447 1.24935 0.97884 0.94855 0.96361 1.69924 1.35773 1.33235 1.14359 0.86552 0.84735 0.78274 0.77838 1.20178 1.21144 1.20183 1.20128 0.79364 0.87271 0.84920 1.90716 1.45421 1.17694 1.86728 1.22030 1.04992 0.92607 0.83907 1.46117 1.05300 1.33918 1.28211 1.70852 1.02705 1.19579 1.08886 1.20059 0.95037 0.97485 0.95300 1.18069 0.89403 0.98349 0.96711 1.21116 0.96717 0.98497 0.96043 1.21023 0.93110 0.99431 1.00349 1.21264 0.99557 0.96144 0.96348 1.21164 0.96094 0.99500 0.96986 1.21343 0.92607 0.97568 0.98934 1.22278 0.92387 0.95506 0.98214 1.22633 0.98549 1.02170 0.97919 1.18029 0.85828 0.82404 0.85628 1.90978 1.20127 1.67397 1.62088 0.92836 0.91800 0.91900 0.89395 0.91810 0.94697 0.93930 0.92619 0.85309 0.85761 0.85533 0.85683 0.85974 0.85610 0.84762 0.83024 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.10 1.61 5.94 -4.04 -0.02 1.59 16 3 N -0.59 -12.63 2.46 -175.06 -0.43 -13.06 16 4 C 0.25 6.58 5.16 -5.20 -0.03 6.55 16 5 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.50 10.86 7.74 -10.98 -0.08 10.78 16 14 O -0.53 -14.13 16.01 5.55 0.09 -14.04 16 15 C 0.09 1.45 4.58 -5.20 -0.02 1.42 16 16 N -0.32 -5.35 2.71 -64.51 -0.17 -5.53 16 17 N -0.20 -3.09 9.98 33.47 0.33 -2.75 16 18 C 0.09 1.17 6.82 -82.74 -0.56 0.61 16 19 C -0.02 -0.27 5.88 -104.90 -0.62 -0.89 16 20 C -0.10 -0.92 9.43 -39.25 -0.37 -1.29 16 21 C -0.12 -0.96 10.03 -39.63 -0.40 -1.36 16 22 C -0.11 -0.95 10.04 -39.51 -0.40 -1.35 16 23 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 24 C -0.08 -0.99 9.57 -39.25 -0.38 -1.37 16 25 C -0.06 -0.66 9.50 -39.04 -0.37 -1.03 16 26 C -0.18 -2.35 10.12 -39.11 -0.40 -2.75 16 27 C 0.48 8.29 7.46 -15.18 -0.11 8.17 16 28 O -0.53 -10.51 16.63 4.87 0.08 -10.43 16 29 H 0.05 0.73 7.24 -51.93 -0.38 0.36 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.13 1.89 6.44 -51.93 -0.33 1.55 16 38 H 0.12 1.63 7.39 -51.93 -0.38 1.24 16 39 H 0.13 0.78 6.22 -52.49 -0.33 0.45 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.66 7.55 -52.49 -0.40 1.27 16 44 H 0.15 0.98 6.29 -52.49 -0.33 0.65 16 45 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -37.78 385.07 -8.57 -46.35 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.79 Total: 0.92 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -4.20 Total: 1.89 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.47 Total: -47.45 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.17 Total: -24.47 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.78 -8.57 -46.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052892908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.943 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds