Wall clock time and date at job start Sat Apr 11 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 N 1.46496 * 109.47035 * 120.00632 * 2 1 3 5 5 C 1.34778 * 119.99599 * 274.99626 * 4 2 1 6 6 O 1.21781 * 120.00272 * 0.02562 * 5 4 2 7 7 C 1.41498 * 120.00140 * 179.97438 * 5 4 2 8 8 C 1.35446 * 120.00268 * 180.02562 * 7 5 4 9 9 C 1.46382 * 120.00222 * 180.02562 * 8 7 5 10 10 C 1.36671 * 126.78456 * 0.02638 * 9 8 7 11 11 N 1.35600 * 109.69744 * 179.97438 * 10 9 8 12 12 C 1.46495 * 124.78236 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47303 * 264.95758 * 12 11 10 14 14 H 1.08003 * 120.00322 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00640 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99365 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00628 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46957 * 59.99942 * 17 15 13 19 19 H 1.48498 * 109.47524 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47041 * 300.00181 * 17 15 13 21 21 C 1.37996 * 110.43883 * 359.97438 * 11 10 9 22 22 C 1.39126 * 133.12884 * 179.70764 * 21 11 10 23 23 C 1.37781 * 119.92733 * 179.83429 * 22 21 11 24 24 C 1.38738 * 120.62991 * 0.49783 * 23 22 21 25 25 C 1.37776 * 120.29846 * 359.74825 * 24 23 22 26 26 C 1.39249 * 119.67741 * 0.02562 * 25 24 23 27 27 C 1.50707 * 109.47155 * 240.00283 * 2 1 3 28 28 N 1.34774 * 120.00129 * 59.99853 * 27 2 1 29 29 O 1.21283 * 120.00094 * 240.00268 * 27 2 1 30 30 H 1.09003 * 109.47105 * 300.00065 * 1 2 3 31 31 H 1.09004 * 109.47016 * 59.99511 * 1 2 3 32 32 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00646 * 95.00190 * 4 2 1 34 34 H 1.08007 * 119.99665 * 0.02562 * 7 5 4 35 35 H 1.07999 * 120.00397 * 0.02562 * 8 7 5 36 36 H 1.08005 * 125.15017 * 359.94291 * 10 9 8 37 37 H 1.09001 * 109.47464 * 24.95764 * 12 11 10 38 38 H 1.09001 * 109.47688 * 144.95836 * 12 11 10 39 39 H 0.97004 * 119.99576 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.03578 * 0.32433 * 22 21 11 41 41 H 1.07999 * 119.68222 * 180.24222 * 23 22 21 42 42 H 1.08001 * 119.85134 * 179.72667 * 24 23 22 43 43 H 1.08000 * 120.16115 * 180.02562 * 25 24 23 44 44 H 0.97004 * 119.99439 * 0.02562 * 28 27 2 45 45 H 0.96992 * 120.00378 * 180.02562 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8571 1.1631 2.4119 7 6 2.6182 -0.6856 3.5125 8 6 2.7471 -0.0101 4.6794 9 6 3.2350 -0.7001 5.8746 10 6 3.5986 -2.0142 5.9698 11 7 3.9981 -2.2872 7.2366 12 6 4.4579 -3.5973 7.7038 13 6 3.3043 -4.3430 8.3234 14 1 2.3262 -3.8868 8.3647 15 6 3.4970 -5.6080 8.8368 16 7 4.6880 -6.1637 8.7860 17 14 2.0668 -6.5326 9.6042 18 1 0.9956 -6.7155 8.5923 19 1 2.5329 -7.8606 10.0779 20 1 1.5351 -5.7564 10.7532 21 6 3.9116 -1.1568 8.0234 22 6 4.1900 -0.9071 9.3634 23 6 4.0044 0.3566 9.8802 24 6 3.5312 1.3855 9.0788 25 6 3.2449 1.1566 7.7506 26 6 3.4323 -0.1146 7.2141 27 6 2.0324 -0.7104 -1.2306 28 7 1.7068 -0.2499 -2.4546 29 8 2.7296 -1.6965 -1.1193 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 1.1525 34 1 2.8750 -1.7335 3.4640 35 1 2.4899 1.0377 4.7281 36 1 3.5714 -2.7272 5.1591 37 1 4.8481 -4.1674 6.8606 38 1 5.2444 -3.4628 8.4464 39 1 4.8235 -7.0539 9.1468 40 1 4.5588 -1.7010 9.9959 41 1 4.2256 0.5470 10.9200 42 1 3.3861 2.3702 9.4980 43 1 2.8770 1.9593 7.1287 44 1 1.1494 0.5390 -2.5435 45 1 2.0298 -0.7073 -3.2466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053395607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:34 Heat of formation + Delta-G solvation = -10.424131 kcal Electronic energy + Delta-G solvation = -27820.792837 eV Core-core repulsion = 23803.428468 eV Total energy + Delta-G solvation = -4017.364369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84381 -40.46427 -39.10735 -36.64241 -35.17208 -34.27832 -34.14310 -33.03357 -31.36483 -30.36933 -29.71136 -28.28016 -26.86537 -25.20130 -23.84940 -22.88834 -22.02815 -20.82997 -20.56402 -20.19795 -18.72589 -17.96872 -17.54835 -16.87764 -16.52149 -16.12513 -15.89496 -15.57439 -15.26838 -15.07572 -14.62461 -14.57073 -14.17242 -14.10071 -13.80869 -13.49750 -13.30146 -13.03165 -12.87553 -12.66404 -12.47116 -12.35435 -11.94872 -11.69678 -11.60639 -11.34485 -11.10356 -11.00058 -10.87083 -10.52654 -10.34197 -10.32223 -10.22835 -10.14212 -9.82263 -9.52800 -9.20314 -8.76947 -8.68365 -7.72738 -6.89089 -6.36361 -4.48153 1.07871 1.73016 2.17421 2.20001 2.84222 3.15622 3.18325 3.20469 3.25013 3.43385 3.61509 3.84910 4.19709 4.37807 4.40743 4.73170 4.84206 4.95656 5.03670 5.13261 5.21074 5.26221 5.39937 5.42866 5.51863 5.61141 5.70491 5.82064 5.86174 6.03075 6.12560 6.22567 6.27836 6.35535 6.39313 6.50900 6.60307 6.79837 6.83255 6.85520 6.95596 7.03106 7.18988 7.32412 7.53376 7.60038 7.72403 7.79793 7.84616 7.90339 8.37636 8.58751 9.20449 10.68801 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009736 B = 0.002567 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.306457 B =10907.007531 C =13037.762866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.114 0.886 4 N -0.720 5.720 5 C 0.568 3.432 6 O -0.566 6.566 7 C -0.297 4.297 8 C 0.087 3.913 9 C -0.226 4.226 10 C 0.132 3.868 11 N -0.435 5.435 12 C 0.230 3.770 13 C -0.546 4.546 14 H 0.066 0.934 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.095 3.905 22 C -0.102 4.102 23 C -0.120 4.120 24 C -0.145 4.145 25 C -0.088 4.088 26 C -0.084 4.084 27 C 0.515 3.485 28 N -0.851 5.851 29 O -0.535 6.535 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.410 0.590 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.170 0.830 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.270 0.730 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.403 0.597 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 12.898 -14.820 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.132 0.868 4 N -0.374 5.374 5 C 0.363 3.637 6 O -0.448 6.448 7 C -0.319 4.319 8 C 0.066 3.934 9 C -0.234 4.234 10 C -0.006 4.006 11 N -0.109 5.109 12 C 0.112 3.888 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.011 4.011 22 C -0.122 4.122 23 C -0.139 4.139 24 C -0.164 4.164 25 C -0.107 4.107 26 C -0.088 4.088 27 C 0.299 3.701 28 N -0.415 5.415 29 O -0.411 6.411 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.187 0.813 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.232 0.768 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.956 12.552 -14.298 19.660 hybrid contribution -0.724 -1.105 -0.068 1.323 sum -5.681 11.446 -14.365 19.226 Atomic orbital electron populations 1.22156 0.92952 1.03163 1.03568 1.20648 0.95608 0.98214 0.83861 0.86804 1.45685 1.68659 1.14741 1.08338 1.17027 0.76964 0.86458 0.83291 1.90780 1.52319 1.16059 1.85628 1.21340 1.15563 1.01524 0.93502 1.21588 0.84603 0.98183 0.89045 1.18864 1.18091 0.93460 0.92947 1.22283 0.94976 0.95633 0.87686 1.44752 1.48794 1.10332 1.07014 1.19862 0.96498 0.75488 0.96931 1.21273 0.95627 1.00913 1.40600 0.91619 1.24942 0.96384 0.97017 0.95274 1.69910 1.21573 1.16227 1.44894 0.86412 0.81835 0.78728 0.79773 1.19831 1.20887 1.19842 1.18291 1.03230 0.86378 0.93168 1.20213 1.02389 0.97436 0.92146 1.20698 1.01605 0.92270 0.99373 1.20780 1.03051 0.98780 0.93821 1.20317 1.00618 0.94755 0.94970 1.19013 1.03510 0.93533 0.92769 1.20755 0.79499 0.84346 0.85510 1.43774 1.55994 1.33912 1.07854 1.90772 1.37460 1.26211 1.86678 0.90343 0.91382 0.91749 0.75336 0.86096 0.85455 0.81277 0.93085 0.93342 0.92051 0.85820 0.86300 0.86600 0.86567 0.76788 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.38 37.16 0.35 -0.85 16 2 C 0.13 1.18 2.98 -69.08 -0.21 0.98 16 3 H 0.11 1.08 7.58 -51.93 -0.39 0.68 16 4 N -0.72 -8.52 4.94 -57.86 -0.29 -8.81 16 5 C 0.57 8.15 7.52 -15.02 -0.11 8.03 16 6 O -0.57 -9.45 15.77 5.12 0.08 -9.37 16 7 C -0.30 -4.24 9.32 -39.34 -0.37 -4.60 16 8 C 0.09 1.34 9.68 -37.30 -0.36 0.98 16 9 C -0.23 -3.94 6.24 -103.41 -0.65 -4.58 16 10 C 0.13 2.39 10.65 -16.45 -0.18 2.22 16 11 N -0.44 -9.04 2.73 -115.38 -0.31 -9.36 16 12 C 0.23 5.38 5.71 -5.20 -0.03 5.35 16 13 C -0.55 -14.09 9.39 -34.44 -0.32 -14.42 16 14 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 17 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.10 1.91 6.79 -83.95 -0.57 1.34 16 22 C -0.10 -1.89 9.97 -39.42 -0.39 -2.28 16 23 C -0.12 -1.87 10.01 -39.56 -0.40 -2.27 16 24 C -0.15 -2.14 10.03 -39.57 -0.40 -2.54 16 25 C -0.09 -1.40 10.09 -39.37 -0.40 -1.80 16 26 C -0.08 -1.55 6.36 -104.93 -0.67 -2.22 16 27 C 0.52 4.75 7.49 -10.98 -0.08 4.66 16 28 N -0.85 -4.07 8.77 31.22 0.27 -3.80 16 29 O -0.54 -7.16 16.67 5.56 0.09 -7.07 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.30 7.57 -51.93 -0.39 -0.09 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 4.69 7.75 -40.82 -0.32 4.37 16 34 H 0.12 1.55 6.88 -52.48 -0.36 1.19 16 35 H 0.13 1.93 7.45 -52.49 -0.39 1.54 16 36 H 0.17 2.62 7.19 -52.48 -0.38 2.24 16 37 H 0.05 1.21 8.11 -51.93 -0.42 0.79 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.40 0.75 8.25 -40.82 -0.34 0.41 16 45 H 0.40 1.57 8.93 -40.82 -0.36 1.21 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -32.33 392.55 -9.25 -41.58 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.86 Total: 9.22 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -4.87 Total: -10.32 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.41 Total: -45.28 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.17 Total: -16.45 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.33 -9.25 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053395607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.158 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds