Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34403 * 125.74751 * 2 1 4 4 C 1.38284 * 107.36189 * 180.12237 * 3 2 1 5 5 C 1.46975 * 126.43942 * 179.84004 * 4 3 2 6 6 C 1.35061 * 119.99957 * 179.71352 * 5 4 3 7 7 C 1.41776 * 120.00188 * 180.02562 * 6 5 4 8 8 O 1.21753 * 119.99679 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00580 * 179.97438 * 7 6 5 10 10 C 1.39818 * 120.00455 * 185.27366 * 9 7 6 11 11 C 1.38958 * 120.04740 * 213.38599 * 10 9 7 12 12 C 1.38114 * 120.03847 * 179.97438 * 11 10 9 13 13 C 1.38218 * 120.12645 * 359.71621 * 12 11 10 14 14 C 1.38765 * 120.08772 * 0.55690 * 13 12 11 15 15 O 1.35897 * 120.01851 * 179.71782 * 14 13 12 16 16 C 1.42900 * 116.99906 * 359.72518 * 15 14 13 17 17 C 1.52998 * 109.47129 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47196 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00280 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99959 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99706 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00055 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47094 * 89.99670 * 22 20 18 24 24 H 1.48499 * 109.47061 * 209.99799 * 22 20 18 25 25 H 1.48500 * 109.46956 * 329.99628 * 22 20 18 26 26 C 1.38615 * 119.96352 * 359.44748 * 14 13 12 27 27 C 1.41436 * 107.12005 * 359.57540 * 4 3 2 28 28 N 1.30438 * 108.03656 * 0.26228 * 27 4 3 29 29 H 1.08996 * 109.47163 * 270.33348 * 1 2 3 30 30 H 1.09003 * 109.47033 * 30.33140 * 1 2 3 31 31 H 1.08993 * 109.47498 * 150.33046 * 1 2 3 32 32 H 1.08004 * 126.31723 * 359.96516 * 3 2 1 33 33 H 1.07993 * 119.99491 * 359.71516 * 5 4 3 34 34 H 1.08001 * 119.99975 * 359.97438 * 6 5 4 35 35 H 0.97003 * 119.99752 * 5.28159 * 9 7 6 36 36 H 1.08010 * 119.97944 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.93200 * 180.02562 * 12 11 10 38 38 H 1.08002 * 119.95403 * 180.27560 * 13 12 11 39 39 H 1.09001 * 109.47286 * 300.00128 * 16 15 14 40 40 H 1.08997 * 109.46977 * 60.00184 * 16 15 14 41 41 H 1.09001 * 109.47017 * 300.00141 * 17 16 15 42 42 H 1.08997 * 109.47165 * 60.00148 * 17 16 15 43 43 H 0.97000 * 119.99943 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.06780 * 180.24991 * 26 14 13 45 45 H 1.07998 * 125.98020 * 180.25751 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.0908 0.0000 4 6 3.5624 0.6547 -0.0028 5 6 4.7638 1.5013 -0.0071 6 6 5.9896 0.9343 -0.0037 7 6 7.1485 1.7510 -0.0073 8 8 7.0387 2.9635 -0.0140 9 7 8.3717 1.1853 -0.0034 10 6 9.5124 1.9866 0.1044 11 6 10.6855 1.6178 -0.5427 12 6 11.8120 2.4099 -0.4366 13 6 11.7741 3.5737 0.3081 14 6 10.6071 3.9441 0.9610 15 8 10.5731 5.0857 1.6975 16 6 11.7769 5.8530 1.7607 17 6 11.5471 7.0919 2.6285 18 6 12.8164 7.9014 2.6947 19 1 13.6990 7.5657 2.1706 20 6 12.8511 9.0708 3.4244 21 7 13.9591 9.7770 3.4826 22 14 11.3248 9.6512 4.3317 23 1 11.3204 9.0862 5.7049 24 1 11.3276 11.1343 4.4066 25 1 10.1132 9.1946 3.6045 26 6 9.4743 3.1519 0.8571 27 6 3.5312 -0.7593 0.0055 28 7 2.2823 -1.1357 0.0071 29 1 -0.3633 0.0060 1.0276 30 1 -0.3633 0.8870 -0.5190 31 1 -0.3634 -0.8929 -0.5086 32 1 1.9176 2.1184 -0.0005 33 1 4.6663 2.5768 -0.0130 34 1 6.0870 -0.1413 0.0026 35 1 8.4608 0.2220 -0.0754 36 1 10.7164 0.7112 -1.1289 37 1 12.7228 2.1218 -0.9405 38 1 12.6553 4.1933 0.3855 39 1 12.5715 5.2472 2.1961 40 1 12.0644 6.1614 0.7555 41 1 10.7524 7.6979 2.1935 42 1 11.2598 6.7832 3.6336 43 1 13.9836 10.5995 3.9962 44 1 8.5640 3.4407 1.3613 45 1 4.3910 -1.4129 0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055569312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 49.686272 kcal Electronic energy + Delta-G solvation = -26802.676154 eV Core-core repulsion = 22787.918368 eV Total energy + Delta-G solvation = -4014.757786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69942 -40.64660 -39.30067 -37.24283 -34.90981 -34.49469 -33.27289 -33.08556 -31.07223 -30.54709 -29.62637 -29.01982 -27.26376 -25.25047 -24.41414 -22.72926 -21.96868 -21.69200 -21.00748 -20.17841 -19.59283 -18.28714 -17.63087 -17.17201 -16.70020 -16.08315 -15.98309 -15.59692 -15.52734 -15.33040 -15.01097 -14.82495 -14.53325 -14.16552 -14.03304 -13.63263 -13.44682 -13.34668 -13.11966 -12.90350 -12.82646 -12.52794 -12.44312 -11.84188 -11.75300 -11.49367 -11.15433 -10.89358 -10.85634 -10.75419 -10.29843 -10.13185 -10.10418 -9.97066 -9.84365 -9.74866 -9.29593 -8.58372 -8.48214 -8.15816 -7.78847 -6.09773 -4.10252 0.47462 1.37648 1.56080 1.67667 1.86281 2.47768 3.00953 3.31046 3.32336 3.39298 3.46358 3.81996 3.91396 4.02921 4.19053 4.42420 4.43293 4.51202 4.63455 4.76755 4.78241 4.94260 5.03553 5.05256 5.23457 5.24654 5.25424 5.40391 5.50383 5.70299 5.85829 5.94131 5.98896 5.99558 6.04629 6.06739 6.31488 6.36997 6.42053 6.48299 6.58736 6.73007 6.97881 7.06677 7.17758 7.29383 7.33919 7.67170 8.00293 8.07403 8.42925 8.91165 9.50893 11.02733 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.001785 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.367667 B =15685.712314 C =17671.406724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.366 5.366 3 C 0.092 3.908 4 C -0.239 4.239 5 C 0.050 3.950 6 C -0.247 4.247 7 C 0.550 3.450 8 O -0.525 6.525 9 N -0.671 5.671 10 C 0.181 3.819 11 C -0.196 4.196 12 C -0.061 4.061 13 C -0.226 4.226 14 C 0.162 3.838 15 O -0.317 6.317 16 C 0.072 3.928 17 C -0.010 4.010 18 C -0.526 4.526 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.880 3.120 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.262 1.262 26 C -0.163 4.163 27 C 0.077 3.923 28 N -0.301 5.301 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.186 0.814 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.410 0.590 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.265 0.735 44 H 0.140 0.860 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.479 -25.249 -9.804 36.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.144 5.144 3 C -0.058 4.058 4 C -0.250 4.250 5 C 0.029 3.971 6 C -0.269 4.269 7 C 0.343 3.657 8 O -0.403 6.403 9 N -0.316 5.316 10 C 0.087 3.913 11 C -0.217 4.217 12 C -0.080 4.080 13 C -0.245 4.245 14 C 0.115 3.885 15 O -0.230 6.230 16 C -0.002 4.002 17 C -0.047 4.047 18 C -0.564 4.564 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.706 3.294 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.184 4.184 27 C -0.110 4.110 28 N -0.120 5.120 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.246 0.754 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.157 0.843 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -25.703 -25.163 -9.600 37.229 hybrid contribution 0.183 0.552 0.379 0.694 sum -25.520 -24.611 -9.221 36.633 Atomic orbital electron populations 1.21999 0.73504 1.05031 1.03963 1.48414 1.07243 1.03902 1.54837 1.23249 0.90613 0.93761 0.98164 1.19462 0.92558 0.93195 1.19823 1.21658 0.89513 0.99117 0.86861 1.21529 0.92323 1.00209 1.12812 1.17218 0.83538 0.88446 0.76524 1.90902 1.86769 1.14443 1.48191 1.43385 1.04641 1.10245 1.73288 1.17269 0.86271 0.92232 0.95575 1.20645 0.93160 1.03032 1.04843 1.20666 0.97471 0.93222 0.96633 1.21388 0.98618 1.00401 1.04120 1.18903 0.93032 0.86579 0.90028 1.86134 1.39460 1.32099 1.65278 1.23083 0.83596 0.92582 1.00906 1.19589 0.98778 0.91389 0.94957 1.20853 0.96504 1.06660 1.32348 0.90714 1.24927 0.96127 0.96083 0.95847 1.69896 1.26671 1.15653 1.41443 0.86766 0.84174 0.77814 0.80603 1.20075 1.21200 1.18676 1.20259 0.98525 0.95903 1.03678 1.24175 0.95053 0.94338 0.97427 1.77183 1.02146 1.07928 1.24791 0.90178 0.88970 0.88863 0.79712 0.84529 0.85659 0.75433 0.86096 0.85677 0.84981 0.92474 0.92436 0.95359 0.95836 0.92496 0.84270 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.20 11.44 59.85 0.68 0.88 16 2 N -0.37 -2.25 3.98 -67.50 -0.27 -2.52 16 3 C 0.09 0.52 11.52 -16.41 -0.19 0.33 16 4 C -0.24 -1.72 6.08 -105.12 -0.64 -2.36 16 5 C 0.05 0.40 9.64 -37.17 -0.36 0.04 16 6 C -0.25 -2.04 9.33 -39.36 -0.37 -2.41 16 7 C 0.55 6.57 7.30 -14.91 -0.11 6.46 16 8 O -0.53 -8.58 13.79 5.14 0.07 -8.51 16 9 N -0.67 -7.08 5.33 -12.44 -0.07 -7.14 16 10 C 0.18 2.49 6.28 -83.75 -0.53 1.97 16 11 C -0.20 -2.38 9.96 -39.36 -0.39 -2.77 16 12 C -0.06 -0.80 10.03 -39.63 -0.40 -1.19 16 13 C -0.23 -3.61 9.04 -39.39 -0.36 -3.97 16 14 C 0.16 2.98 6.68 -39.25 -0.26 2.72 16 15 O -0.32 -6.68 10.13 -19.42 -0.20 -6.88 16 16 C 0.07 1.56 4.68 37.16 0.17 1.73 16 17 C -0.01 -0.24 4.41 -27.89 -0.12 -0.37 16 18 C -0.53 -15.11 9.66 -34.44 -0.33 -15.45 16 19 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 22 Si 0.88 22.05 27.47 -169.99 -4.67 17.39 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 26 C -0.16 -2.79 8.59 -39.24 -0.34 -3.13 16 27 C 0.08 0.55 11.39 -16.93 -0.19 0.36 16 28 N -0.30 -2.53 12.49 30.89 0.39 -2.14 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.19 0.43 8.06 -52.48 -0.42 0.01 16 33 H 0.14 1.19 7.45 -52.49 -0.39 0.79 16 34 H 0.13 0.64 6.93 -52.49 -0.36 0.27 16 35 H 0.41 2.65 8.78 -40.82 -0.36 2.29 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 39 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 40 H 0.06 1.19 7.65 -51.93 -0.40 0.80 16 41 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 42 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.14 2.57 6.41 -52.49 -0.34 2.23 16 45 H 0.19 0.81 7.31 -52.49 -0.38 0.43 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -37.77 387.55 -7.80 -45.57 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.85 Total: 0.38 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.82 Total: -15.11 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.82 Total: -38.67 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.13 Total: -15.39 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.77 -7.80 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055569312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.256 kcal (2) G-P(sol) polarization free energy of solvation -37.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds