Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21268 * 120.00360 * 2 1 4 4 N 1.34779 * 119.99349 * 179.97438 * 2 1 3 5 5 C 1.46516 * 124.91269 * 180.02562 * 4 2 1 6 6 C 1.53741 * 105.21422 * 180.02562 * 5 4 2 7 7 C 1.51249 * 104.51052 * 359.77477 * 6 5 4 8 8 C 1.37745 * 130.85918 * 179.58108 * 7 6 5 9 9 C 1.39691 * 120.02907 * 180.34897 * 8 7 6 10 10 C 1.47601 * 120.23870 * 180.25385 * 9 8 7 11 11 O 1.21586 * 120.00254 * 314.50880 * 10 9 8 12 12 N 1.34777 * 120.00034 * 134.51116 * 10 9 8 13 13 C 1.46497 * 120.00343 * 185.87038 * 12 10 9 14 14 C 1.50708 * 109.46779 * 89.99857 * 13 12 10 15 15 H 1.07994 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99814 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00417 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47113 * 90.00232 * 18 16 14 20 20 H 1.48500 * 109.47118 * 209.99869 * 18 16 14 21 21 H 1.48501 * 109.47222 * 330.00278 * 18 16 14 22 22 C 1.46499 * 120.00062 * 5.87651 * 12 10 9 23 23 C 1.53004 * 109.47430 * 98.08867 * 22 12 10 24 24 C 1.47195 * 109.47205 * 185.43355 * 23 22 12 25 25 N 6.91491 * 39.20248 * 148.60182 * 2 1 3 26 26 C 1.39760 * 119.52061 * 0.27601 * 9 8 7 27 27 C 1.37371 * 120.07826 * 359.97438 * 26 9 8 28 28 C 1.38861 * 108.50314 * 0.38159 * 7 6 5 29 29 H 1.09000 * 109.47231 * 240.00014 * 1 2 3 30 30 H 1.09002 * 109.46677 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47048 * 119.99787 * 1 2 3 32 32 H 1.08994 * 110.29416 * 298.93305 * 5 4 2 33 33 H 1.08998 * 110.29444 * 61.07147 * 5 4 2 34 34 H 1.08998 * 110.43063 * 118.76163 * 6 5 4 35 35 H 1.09004 * 110.42780 * 241.12156 * 6 5 4 36 36 H 1.08005 * 119.98698 * 0.62034 * 8 7 6 37 37 H 1.08992 * 109.47748 * 210.00020 * 13 12 10 38 38 H 1.09004 * 109.47348 * 330.00857 * 13 12 10 39 39 H 0.96998 * 120.00216 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47396 * 218.09690 * 22 12 10 41 41 H 1.09004 * 109.46850 * 338.08975 * 22 12 10 42 42 H 1.08997 * 109.47168 * 305.44010 * 23 22 12 43 43 H 1.09003 * 109.46442 * 65.43920 * 23 22 12 44 44 H 1.07998 * 119.96150 * 180.02562 * 26 9 8 45 45 H 1.08003 * 119.76133 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6405 -1.2929 0.0011 6 6 3.9153 -2.8056 0.0009 7 6 2.5423 -3.4401 0.0059 8 6 2.1614 -4.7638 0.0003 9 6 0.8058 -5.1012 -0.0004 10 6 0.3924 -6.5181 -0.0008 11 8 0.9311 -7.3084 -0.7516 12 7 -0.5822 -6.9360 0.8311 13 6 -0.9043 -8.3621 0.9241 14 6 -0.0613 -8.9984 1.9991 15 1 0.6436 -8.4003 2.5573 16 6 -0.1899 -10.3442 2.2697 17 7 -1.0479 -11.0727 1.5896 18 14 0.8546 -11.1328 3.6026 19 1 0.1394 -11.0567 4.9018 20 1 1.1053 -12.5554 3.2582 21 1 2.1494 -10.4132 3.7075 22 6 -1.3195 -5.9641 1.6423 23 6 -2.6451 -5.6281 0.9560 24 6 -3.3260 -4.5572 1.7017 25 7 -3.8515 -3.7306 2.2770 26 6 -0.1561 -4.0873 -0.0011 27 6 0.2324 -2.7697 -0.0006 28 6 1.5898 -2.4297 0.0000 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 4.0599 -0.8328 -0.8935 33 1 4.0592 -0.8325 0.8959 34 1 4.4672 -3.0919 -0.8943 35 1 4.4683 -3.0919 0.8955 36 1 2.9111 -5.5413 0.0007 37 1 -1.9591 -8.4809 1.1716 38 1 -0.6988 -8.8441 -0.0317 39 1 -1.1387 -12.0194 1.7803 40 1 -1.5172 -6.3881 2.6268 41 1 -0.7259 -5.0563 1.7502 42 1 -2.4521 -5.2949 -0.0637 43 1 -3.2782 -6.5152 0.9348 44 1 -1.2061 -4.3400 -0.0011 45 1 -0.5153 -1.9903 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067231251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = 9.957565 kcal Electronic energy + Delta-G solvation = -29331.853598 eV Core-core repulsion = 25315.373046 eV Total energy + Delta-G solvation = -4016.480552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54640 -39.84450 -38.59682 -36.99337 -36.18540 -35.36771 -33.53738 -32.93960 -31.03796 -30.39574 -30.02362 -29.14437 -27.36432 -24.47767 -24.02524 -23.64460 -22.58952 -21.78620 -20.22590 -18.94201 -17.79934 -17.51450 -17.16178 -16.73608 -16.56617 -16.32590 -15.77686 -15.13341 -14.94835 -14.87690 -14.76650 -14.41658 -14.29312 -14.03612 -13.70177 -13.29772 -13.02514 -12.96903 -12.84055 -12.74884 -12.63625 -12.45799 -12.31155 -12.22146 -12.17556 -11.91043 -11.77240 -11.31873 -11.14280 -10.98416 -10.89273 -10.70205 -10.47215 -10.37207 -10.24333 -9.76547 -9.21539 -9.03381 -8.52022 -8.04799 -7.89834 -6.13707 -4.18761 0.77946 1.15556 2.18939 2.38679 2.65929 2.73661 3.12655 3.25375 3.32962 3.35531 3.49118 3.71882 3.92746 4.12008 4.22825 4.37420 4.38483 4.66195 4.71130 4.71962 4.83436 4.94500 4.95511 5.00782 5.06107 5.08525 5.14311 5.22071 5.26158 5.39155 5.44738 5.53933 5.56929 5.73260 5.77628 5.81308 6.01764 6.06844 6.11151 6.29745 6.60340 6.88582 7.05978 7.29101 7.36175 7.49798 7.55469 7.82293 8.11147 8.15621 8.73889 8.89813 9.47145 10.94368 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003213 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.290646 B = 8711.756724 C =10139.018295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.524 3.476 3 O -0.527 6.527 4 N -0.552 5.552 5 C 0.106 3.894 6 C -0.086 4.086 7 C -0.138 4.138 8 C -0.021 4.021 9 C -0.134 4.134 10 C 0.554 3.446 11 O -0.527 6.527 12 N -0.589 5.589 13 C 0.244 3.756 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.106 3.894 23 C -0.057 4.057 24 C 0.215 3.785 25 N -0.440 5.440 26 C -0.073 4.073 27 C -0.168 4.168 28 C 0.153 3.847 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.142 0.858 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 17.312 -3.781 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.316 3.684 3 O -0.402 6.402 4 N -0.275 5.275 5 C -0.016 4.016 6 C -0.123 4.123 7 C -0.141 4.141 8 C -0.041 4.041 9 C -0.138 4.138 10 C 0.341 3.659 11 O -0.403 6.403 12 N -0.319 5.319 13 C 0.125 3.875 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.020 4.020 23 C -0.098 4.098 24 C -0.103 4.103 25 N -0.117 5.117 26 C -0.091 4.091 27 C -0.188 4.188 28 C 0.057 3.943 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.155 0.845 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.455 18.659 -3.339 19.113 hybrid contribution 0.681 -0.922 0.605 1.296 sum 3.136 17.736 -2.734 18.218 Atomic orbital electron populations 1.22318 0.90756 1.06045 1.04962 1.20796 0.90842 0.81794 0.75010 1.90741 1.70969 1.30319 1.48212 1.45925 1.07859 1.04382 1.69333 1.22080 0.78953 0.97016 1.03513 1.21143 0.94665 0.92092 1.04419 1.19867 0.94702 0.92607 1.06947 1.20418 0.95126 0.94260 0.94273 1.20059 0.93786 0.94350 1.05613 1.18041 0.80398 0.86496 0.80976 1.90795 1.54460 1.55390 1.39682 1.48116 1.34150 1.09771 1.39876 1.19404 0.96356 0.72880 0.98855 1.21415 1.22556 0.94100 1.18975 0.92277 1.24907 0.95446 0.97000 0.96526 1.69913 1.35395 1.07316 1.40477 0.86518 0.80735 0.78658 0.81654 1.20622 1.21087 1.19857 1.21557 0.90211 0.94309 0.95896 1.20037 0.97648 0.93870 0.98291 1.29039 0.93531 0.93991 0.93786 1.81213 1.09623 1.11461 1.09391 1.21486 1.00170 0.91264 0.96228 1.20991 0.92949 0.97412 1.07464 1.18452 0.93590 0.84193 0.98033 0.88269 0.88422 0.88279 0.89832 0.89826 0.88726 0.88769 0.84523 0.94489 0.93216 0.92602 0.88772 0.89623 0.87118 0.85939 0.84061 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.14 36.01 0.29 -1.01 16 2 C 0.52 5.69 7.91 -10.98 -0.09 5.60 16 3 O -0.53 -7.44 17.37 5.57 0.10 -7.35 16 4 N -0.55 -5.70 3.12 -112.87 -0.35 -6.05 16 5 C 0.11 0.92 7.05 -3.65 -0.03 0.89 16 6 C -0.09 -0.69 6.94 -27.23 -0.19 -0.88 16 7 C -0.14 -1.50 6.21 -104.30 -0.65 -2.15 16 8 C -0.02 -0.28 9.68 -39.22 -0.38 -0.66 16 9 C -0.13 -1.86 5.09 -104.97 -0.53 -2.39 16 10 C 0.55 10.06 7.27 -12.44 -0.09 9.96 16 11 O -0.53 -11.92 16.54 5.29 0.09 -11.83 16 12 N -0.59 -10.36 2.46 -176.26 -0.43 -10.80 16 13 C 0.24 5.52 5.22 -5.19 -0.03 5.49 16 14 C -0.53 -13.69 9.39 -34.44 -0.32 -14.01 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 18 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.11 1.37 4.83 -4.04 -0.02 1.35 16 23 C -0.06 -0.56 5.10 -29.52 -0.15 -0.71 16 24 C 0.21 2.35 15.37 -20.77 -0.32 2.03 16 25 N -0.44 -5.87 18.54 42.15 0.78 -5.09 16 26 C -0.07 -0.78 7.38 -39.33 -0.29 -1.07 16 27 C -0.17 -1.61 8.84 -39.26 -0.35 -1.95 16 28 C 0.15 1.62 6.60 -83.56 -0.55 1.06 16 29 H 0.10 0.62 6.89 -51.93 -0.36 0.26 16 30 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.10 0.57 6.89 -51.93 -0.36 0.21 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.04 0.82 7.99 -51.93 -0.42 0.41 16 38 H 0.05 1.30 7.35 -51.93 -0.38 0.91 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.09 1.28 8.13 -51.93 -0.42 0.85 16 41 H 0.09 0.98 5.03 -51.93 -0.26 0.72 16 42 H 0.11 0.88 6.19 -51.93 -0.32 0.56 16 43 H 0.12 1.17 8.06 -51.93 -0.42 0.75 16 44 H 0.14 1.28 3.64 -52.49 -0.19 1.09 16 45 H 0.14 1.00 4.15 -52.48 -0.22 0.78 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -34.17 377.85 -7.62 -41.79 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.43 Total: -1.11 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -3.79 Total: 3.14 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.73 Total: -45.93 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.18 Total: -19.18 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.17 -7.62 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.751 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds