Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21268 * 120.00360 * 2 1 4 4 N 1.34779 * 119.99349 * 179.97438 * 2 1 3 5 5 C 1.46516 * 124.91269 * 180.02562 * 4 2 1 6 6 C 1.53741 * 105.21422 * 180.02562 * 5 4 2 7 7 C 1.51249 * 104.51052 * 359.77477 * 6 5 4 8 8 C 1.37745 * 130.85918 * 179.58108 * 7 6 5 9 9 C 1.39691 * 120.02907 * 180.34897 * 8 7 6 10 10 C 1.47601 * 120.23870 * 180.25385 * 9 8 7 11 11 O 1.21586 * 120.00254 * 314.50880 * 10 9 8 12 12 N 1.34777 * 120.00034 * 134.51116 * 10 9 8 13 13 C 1.46497 * 120.00343 * 185.87038 * 12 10 9 14 14 C 1.50708 * 109.46779 * 89.99857 * 13 12 10 15 15 H 1.07994 * 119.99948 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99814 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00417 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47113 * 90.00232 * 18 16 14 20 20 H 1.48500 * 109.47118 * 209.99869 * 18 16 14 21 21 H 1.48501 * 109.47222 * 330.00278 * 18 16 14 22 22 C 1.46499 * 120.00062 * 5.87651 * 12 10 9 23 23 C 1.53004 * 109.47430 * 98.08867 * 22 12 10 24 24 C 1.47195 * 109.47205 * 185.43355 * 23 22 12 25 25 N 6.91491 * 39.20248 * 148.60182 * 2 1 3 26 26 C 1.39760 * 119.52061 * 0.27601 * 9 8 7 27 27 C 1.37371 * 120.07826 * 359.97438 * 26 9 8 28 28 C 1.38861 * 108.50314 * 0.38159 * 7 6 5 29 29 H 1.09000 * 109.47231 * 240.00014 * 1 2 3 30 30 H 1.09002 * 109.46677 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47048 * 119.99787 * 1 2 3 32 32 H 1.08994 * 110.29416 * 298.93305 * 5 4 2 33 33 H 1.08998 * 110.29444 * 61.07147 * 5 4 2 34 34 H 1.08998 * 110.43063 * 118.76163 * 6 5 4 35 35 H 1.09004 * 110.42780 * 241.12156 * 6 5 4 36 36 H 1.08005 * 119.98698 * 0.62034 * 8 7 6 37 37 H 1.08992 * 109.47748 * 210.00020 * 13 12 10 38 38 H 1.09004 * 109.47348 * 330.00857 * 13 12 10 39 39 H 0.96998 * 120.00216 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47396 * 218.09690 * 22 12 10 41 41 H 1.09004 * 109.46850 * 338.08975 * 22 12 10 42 42 H 1.08997 * 109.47168 * 305.44010 * 23 22 12 43 43 H 1.09003 * 109.46442 * 65.43920 * 23 22 12 44 44 H 1.07998 * 119.96150 * 180.02562 * 26 9 8 45 45 H 1.08003 * 119.76133 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6405 -1.2929 0.0011 6 6 3.9153 -2.8056 0.0009 7 6 2.5423 -3.4401 0.0059 8 6 2.1614 -4.7638 0.0003 9 6 0.8058 -5.1012 -0.0004 10 6 0.3924 -6.5181 -0.0008 11 8 0.9311 -7.3084 -0.7516 12 7 -0.5822 -6.9360 0.8311 13 6 -0.9043 -8.3621 0.9241 14 6 -0.0613 -8.9984 1.9991 15 1 0.6436 -8.4003 2.5573 16 6 -0.1899 -10.3442 2.2697 17 7 -1.0479 -11.0727 1.5896 18 14 0.8546 -11.1328 3.6026 19 1 0.1394 -11.0567 4.9018 20 1 1.1053 -12.5554 3.2582 21 1 2.1494 -10.4132 3.7075 22 6 -1.3195 -5.9641 1.6423 23 6 -2.6451 -5.6281 0.9560 24 6 -3.3260 -4.5572 1.7017 25 7 -3.8515 -3.7306 2.2770 26 6 -0.1561 -4.0873 -0.0011 27 6 0.2324 -2.7697 -0.0006 28 6 1.5898 -2.4297 0.0000 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 4.0599 -0.8328 -0.8935 33 1 4.0592 -0.8325 0.8959 34 1 4.4672 -3.0919 -0.8943 35 1 4.4683 -3.0919 0.8955 36 1 2.9111 -5.5413 0.0007 37 1 -1.9591 -8.4809 1.1716 38 1 -0.6988 -8.8441 -0.0317 39 1 -1.1387 -12.0194 1.7803 40 1 -1.5172 -6.3881 2.6268 41 1 -0.7259 -5.0563 1.7502 42 1 -2.4521 -5.2949 -0.0637 43 1 -3.2782 -6.5152 0.9348 44 1 -1.2061 -4.3400 -0.0011 45 1 -0.5153 -1.9903 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067231251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -10.262263 kcal Electronic energy + Delta-G solvation = -29332.730395 eV Core-core repulsion = 25315.373046 eV Total energy + Delta-G solvation = -4017.357350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39170 -41.05410 -39.60039 -38.07187 -37.13796 -36.70866 -34.82144 -34.31722 -32.30421 -31.37377 -30.82096 -29.88048 -29.03085 -25.75147 -25.34226 -24.39239 -23.86271 -22.74030 -21.06106 -20.22133 -18.89071 -18.37861 -18.34070 -18.15508 -17.53149 -17.47934 -17.01326 -16.44156 -16.11114 -15.88094 -15.60944 -15.48484 -15.40577 -15.09466 -14.84466 -14.38893 -14.22985 -13.97746 -13.84756 -13.69700 -13.55735 -13.41904 -13.34144 -13.12533 -13.08934 -12.92819 -12.89968 -12.88464 -12.63062 -12.47173 -12.16439 -12.00235 -11.77097 -11.65136 -11.32189 -11.30161 -10.67877 -10.55580 -9.89959 -9.50399 -8.89463 -8.15860 -6.27884 -0.16956 0.29427 1.33665 1.42268 1.44657 1.53572 1.62882 1.72261 1.85745 1.88650 2.27341 2.46177 2.71675 3.09137 3.16586 3.22496 3.41292 3.62838 3.71331 3.91238 4.03096 4.08109 4.08789 4.13131 4.19733 4.29335 4.38628 4.46148 4.53063 4.59115 4.75745 4.82745 4.89467 4.92487 4.92662 5.03024 5.05537 5.12818 5.20183 5.26979 5.37302 5.40424 5.61376 5.72787 5.88940 6.14898 6.25905 6.61484 6.70282 6.75748 6.81856 7.32057 7.47376 8.90834 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.003213 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.290646 B = 8711.756724 C =10139.018295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.519 3.481 3 O -0.566 6.566 4 N -0.554 5.554 5 C 0.100 3.900 6 C -0.082 4.082 7 C -0.139 4.139 8 C -0.034 4.034 9 C -0.151 4.151 10 C 0.552 3.448 11 O -0.585 6.585 12 N -0.588 5.588 13 C 0.258 3.742 14 C -0.542 4.542 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.103 3.897 23 C -0.047 4.047 24 C 0.243 3.757 25 N -0.474 5.474 26 C -0.064 4.064 27 C -0.156 4.156 28 C 0.155 3.845 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.042 0.958 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.160 0.840 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 19.352 -3.149 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.312 3.688 3 O -0.444 6.444 4 N -0.276 5.276 5 C -0.021 4.021 6 C -0.119 4.119 7 C -0.142 4.142 8 C -0.053 4.053 9 C -0.156 4.156 10 C 0.341 3.659 11 O -0.466 6.466 12 N -0.317 5.317 13 C 0.137 3.863 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.185 4.185 17 N -0.564 5.564 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.021 4.021 23 C -0.087 4.087 24 C -0.075 4.075 25 N -0.152 5.152 26 C -0.082 4.082 27 C -0.176 4.176 28 C 0.059 3.941 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.177 0.823 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.965 20.733 -2.677 20.998 hybrid contribution 0.878 -1.496 0.384 1.776 sum 2.843 19.238 -2.293 19.581 Atomic orbital electron populations 1.22411 0.87852 1.07231 1.06443 1.21499 0.92278 0.81147 0.73846 1.90727 1.72042 1.31561 1.50094 1.46064 1.08531 1.04245 1.68743 1.22235 0.78407 0.97367 1.04123 1.21218 0.93506 0.91345 1.05792 1.20012 0.96430 0.91771 1.06014 1.20343 0.94619 0.94998 0.95388 1.19708 0.94935 0.92155 1.08768 1.18690 0.79372 0.88025 0.79772 1.90754 1.56252 1.57506 1.42044 1.47972 1.34717 1.08667 1.40361 1.18890 0.95997 0.75623 0.95757 1.21748 1.22548 0.94495 1.19328 0.92833 1.25677 0.96577 0.97688 0.98584 1.70013 1.36836 1.07557 1.41945 0.85588 0.79183 0.77493 0.79593 1.19288 1.21080 1.19868 1.21755 0.91480 0.93730 0.95148 1.19944 0.95828 0.94000 0.98975 1.28909 0.92619 0.93204 0.92772 1.81260 1.10730 1.12787 1.10436 1.21591 1.00306 0.90932 0.95410 1.21297 0.93239 0.97468 1.05620 1.18621 0.94068 0.84147 0.97296 0.86775 0.87697 0.86327 0.89241 0.89346 0.87353 0.87458 0.85860 0.93979 0.97362 0.92540 0.89437 0.87664 0.84553 0.85318 0.82274 0.81077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.14 71.24 0.58 -1.35 16 2 C 0.52 9.98 7.91 87.66 0.69 10.68 16 3 O -0.57 -15.18 17.37 -2.99 -0.05 -15.23 16 4 N -0.55 -10.04 3.12 -629.41 -1.96 -12.00 16 5 C 0.10 1.53 7.05 86.63 0.61 2.14 16 6 C -0.08 -1.16 6.94 30.27 0.21 -0.95 16 7 C -0.14 -2.79 6.21 -19.66 -0.12 -2.91 16 8 C -0.03 -0.86 9.68 22.50 0.22 -0.64 16 9 C -0.15 -4.09 5.09 -20.09 -0.10 -4.19 16 10 C 0.55 20.43 7.27 86.71 0.63 21.06 16 11 O -0.58 -27.84 16.54 -3.99 -0.07 -27.91 16 12 N -0.59 -20.80 2.46 -829.83 -2.04 -22.85 16 13 C 0.26 12.03 5.22 85.64 0.45 12.48 16 14 C -0.54 -28.49 9.39 25.60 0.24 -28.25 16 15 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 16 C 0.01 0.76 5.46 84.65 0.46 1.23 16 17 N -0.92 -52.16 13.29 21.45 0.28 -51.88 16 18 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.10 2.49 4.83 86.38 0.42 2.91 16 23 C -0.05 -0.80 5.10 28.79 0.15 -0.65 16 24 C 0.24 4.60 15.37 89.44 1.38 5.98 16 25 N -0.47 -11.46 18.54 20.00 0.37 -11.09 16 26 C -0.06 -1.20 7.38 22.43 0.17 -1.03 16 27 C -0.16 -2.41 8.84 22.48 0.20 -2.21 16 28 C 0.16 2.83 6.60 38.50 0.25 3.09 16 29 H 0.11 0.91 6.89 -2.39 -0.02 0.90 16 30 H 0.10 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.12 0.82 6.89 -2.39 -0.02 0.81 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.04 1.90 7.99 -2.39 -0.02 1.88 16 38 H 0.01 0.45 7.35 -2.38 -0.02 0.44 16 39 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.09 2.26 8.13 -2.39 -0.02 2.24 16 41 H 0.11 2.15 5.03 -2.38 -0.01 2.14 16 42 H 0.14 1.70 6.19 -2.39 -0.01 1.68 16 43 H 0.13 2.17 8.06 -2.39 -0.02 2.15 16 44 H 0.16 2.31 3.64 -2.91 -0.01 2.30 16 45 H 0.17 1.57 4.15 -2.91 -0.01 1.56 16 Total: -1.00 -77.23 377.85 6.03 -71.20 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.05 Total: 7.81 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.42 Total: 17.37 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -3.35 Total: -97.81 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.12 Total: -43.14 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -77.23 6.03 -71.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.937 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds