Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47284 * 2 1 4 4 O 1.42101 * 108.57860 * 65.51418 * 3 2 1 5 5 O 1.42102 * 108.57723 * 294.48630 * 3 2 1 6 6 C 1.81401 * 101.91892 * 180.02562 * 3 2 1 7 7 C 1.53006 * 109.46883 * 180.02562 * 6 3 2 8 8 N 1.46900 * 109.47078 * 179.97438 * 7 6 3 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 8 12 12 C 1.38250 * 120.10833 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.05742 * 359.68104 * 12 11 10 14 14 C 1.38710 * 119.94311 * 0.57011 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.72143 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.08991 * 109.47738 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47103 * 300.00115 * 1 2 3 29 29 H 1.09002 * 109.47174 * 59.99651 * 1 2 3 30 30 H 1.08997 * 109.46785 * 239.99797 * 2 1 3 31 31 H 1.09003 * 109.46692 * 120.00134 * 2 1 3 32 32 H 1.08997 * 109.47319 * 60.00528 * 6 3 2 33 33 H 1.08996 * 109.47258 * 299.99589 * 6 3 2 34 34 H 1.08996 * 109.47046 * 59.99624 * 7 6 3 35 35 H 1.09006 * 109.46798 * 299.99892 * 7 6 3 36 36 H 1.00901 * 111.00271 * 303.95429 * 8 7 6 37 37 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 38 38 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 39 39 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 40 40 H 1.08006 * 119.97154 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.03137 * 180.29323 * 13 12 11 42 42 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 43 43 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 44 44 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 45 45 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 46 46 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4718 -0.0008 7 6 4.6282 2.8348 -0.0002 8 7 6.0844 2.6417 -0.0003 9 6 6.7866 3.9320 -0.0003 10 6 8.2746 3.6942 0.0003 11 6 8.9563 3.5850 1.1984 12 6 10.3215 3.3673 1.2023 13 6 11.0072 3.2518 0.0084 14 6 10.3266 3.3662 -1.1948 15 8 10.9997 3.2586 -2.3704 16 6 12.4088 3.0336 -2.2931 17 6 12.9887 2.9402 -3.7058 18 6 14.4746 2.7022 -3.6242 19 1 14.9569 2.6249 -2.6610 20 6 15.2180 2.5822 -4.7791 21 7 14.6305 2.6759 -5.9520 22 14 17.0599 2.2880 -4.6780 23 1 17.4732 2.2228 -3.2531 24 1 17.3940 1.0060 -5.3489 25 1 17.7766 3.4005 -5.3513 26 6 8.9565 3.5850 -1.1960 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2253 0.9148 -0.8910 33 1 4.2260 0.9146 0.8890 34 1 4.3358 3.3914 0.8901 35 1 4.3351 3.3924 -0.8899 36 1 6.3738 2.0723 0.7809 37 1 6.5089 4.4968 0.8897 38 1 6.5089 4.4968 -0.8903 39 1 8.4213 3.6698 2.1328 40 1 10.8518 3.2828 2.1394 41 1 12.0730 3.0770 0.0119 42 1 12.8800 3.8596 -1.7603 43 1 12.5992 2.1019 -1.7602 44 1 12.5175 2.1139 -4.2381 45 1 12.7983 3.8715 -4.2391 46 1 15.1535 2.5911 -6.7646 47 1 8.4236 3.6704 -2.1315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069172857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -97.407423 kcal Electronic energy + Delta-G solvation = -25753.939752 eV Core-core repulsion = 21835.954705 eV Total energy + Delta-G solvation = -3917.985047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.86131 -37.84628 -37.44354 -36.58074 -36.35577 -33.72564 -33.40500 -32.59539 -30.88431 -29.92981 -29.09946 -25.81924 -24.99165 -24.48159 -22.69839 -22.39063 -21.65860 -20.20995 -19.33646 -17.71834 -17.50935 -16.98224 -16.49184 -16.25118 -16.16432 -15.68187 -15.50221 -15.35293 -15.10474 -14.83748 -14.59768 -14.50149 -13.91082 -13.71591 -13.52809 -13.09462 -12.95706 -12.71478 -12.66785 -12.54373 -12.45375 -12.33463 -12.23521 -12.13391 -11.91344 -11.54802 -11.44101 -11.33876 -11.23897 -10.92580 -10.85691 -10.69591 -10.46033 -9.88145 -9.67174 -9.29765 -8.94352 -8.71010 -8.46372 -7.87743 -6.11531 -4.16221 -0.57296 1.39383 1.63681 2.22386 3.03619 3.25563 3.32631 3.36131 3.48414 3.69414 3.81431 4.01801 4.05426 4.07632 4.18789 4.35445 4.39690 4.62370 4.71982 4.82714 4.90971 5.00464 5.06672 5.08827 5.11402 5.22544 5.24587 5.24986 5.36999 5.37493 5.42689 5.66341 5.81030 6.01861 6.04026 6.14996 6.46728 6.52306 6.54692 6.61612 6.71138 6.94052 6.95498 7.49753 7.62979 7.80111 8.04877 8.22632 8.89588 9.48220 11.00040 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.001531 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.585066 B =18279.853051 C =19183.145752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.613 4.613 3 S 2.419 3.581 4 O -0.939 6.939 5 O -0.934 6.934 6 C -0.613 4.613 7 C 0.069 3.931 8 N -0.675 5.675 9 C 0.099 3.901 10 C -0.054 4.054 11 C -0.166 4.166 12 C -0.081 4.081 13 C -0.210 4.210 14 C 0.145 3.855 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.138 4.138 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.346 0.654 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.247 -4.179 16.924 31.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.742 4.742 3 S 2.600 3.400 4 O -0.936 6.936 5 O -0.931 6.931 6 C -0.742 4.742 7 C -0.062 4.062 8 N -0.307 5.307 9 C -0.030 4.030 10 C -0.054 4.054 11 C -0.185 4.185 12 C -0.099 4.099 13 C -0.229 4.229 14 C 0.098 3.902 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.013 4.013 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.157 4.157 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.164 0.836 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.726 -3.459 15.834 31.256 hybrid contribution 1.729 -0.882 1.057 2.210 sum -24.997 -4.341 16.891 30.480 Atomic orbital electron populations 1.21526 0.90273 1.04994 1.03835 1.30200 1.07617 1.24691 1.11713 1.08107 0.78123 0.78315 0.75471 1.93595 1.81100 1.73195 1.45668 1.93611 1.80980 1.73057 1.45425 1.30422 1.24120 1.07279 1.12375 1.21598 0.89396 0.92614 1.02548 1.60478 1.03117 1.16447 1.50681 1.20904 0.89869 0.90358 1.01825 1.19326 0.94120 0.99379 0.92605 1.20773 0.94556 1.06275 0.96922 1.20846 0.94055 0.97658 0.97311 1.21409 1.01059 1.08106 0.92281 1.19205 0.91937 0.93300 0.85785 1.86182 1.24327 1.85298 1.26982 1.23332 0.75202 0.99004 1.03339 1.19131 0.94985 0.98810 0.88326 1.21009 0.91967 1.50635 0.92878 0.92320 1.24993 0.98932 0.95008 0.95262 1.69989 1.35950 1.49372 0.97375 0.86429 0.84824 0.77902 0.78216 1.19652 1.20841 1.20828 1.20278 0.91364 1.05632 0.98446 0.89979 0.90805 0.90693 0.84771 0.84975 0.83787 0.85002 0.93396 0.89036 0.83552 0.93805 0.89554 0.86743 0.86188 0.85224 0.93137 0.93146 0.95367 0.95367 0.92752 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.92 37.16 0.37 -0.20 16 2 C -0.61 -1.76 6.52 37.16 0.24 -1.52 16 3 S 2.42 13.96 4.72 -107.50 -0.51 13.46 16 4 O -0.94 -8.61 18.10 -57.83 -1.05 -9.66 16 5 O -0.93 -9.04 18.10 -57.83 -1.05 -10.08 16 6 C -0.61 -2.78 6.07 37.16 0.23 -2.55 16 7 C 0.07 0.50 5.69 -3.82 -0.02 0.47 16 8 N -0.68 -5.87 6.49 -115.06 -0.75 -6.62 16 9 C 0.10 0.94 5.81 -4.98 -0.03 0.91 16 10 C -0.05 -0.65 5.39 -104.65 -0.56 -1.22 16 11 C -0.17 -1.91 9.70 -39.56 -0.38 -2.29 16 12 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 13 C -0.21 -3.22 9.04 -39.44 -0.36 -3.57 16 14 C 0.14 2.51 6.69 -39.22 -0.26 2.24 16 15 O -0.31 -6.49 10.14 -19.43 -0.20 -6.69 16 16 C 0.07 1.40 4.68 37.16 0.17 1.57 16 17 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 18 C -0.53 -14.66 9.11 -34.44 -0.31 -14.98 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.14 -2.07 9.64 -39.43 -0.38 -2.45 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.13 0.11 8.14 -51.92 -0.42 -0.32 16 32 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.13 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.35 2.62 8.72 -39.29 -0.34 2.27 16 37 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 38 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.11 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.13 1.97 6.30 -52.48 -0.33 1.64 16 42 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 43 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -36.41 407.08 -11.41 -47.82 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.77 Total: -1.99 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.94 Total: -22.89 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: -0.01 Total: -32.28 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -2.29 Total: -26.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 13.96 SS G_CDS: -0.51 Total: 13.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.41 -11.41 -47.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069172857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.591 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds