Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47284 * 2 1 4 4 O 1.42101 * 108.57860 * 65.51418 * 3 2 1 5 5 O 1.42102 * 108.57723 * 294.48630 * 3 2 1 6 6 C 1.81401 * 101.91892 * 180.02562 * 3 2 1 7 7 C 1.53006 * 109.46883 * 180.02562 * 6 3 2 8 8 N 1.46900 * 109.47078 * 179.97438 * 7 6 3 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 8 12 12 C 1.38250 * 120.10833 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.05742 * 359.68104 * 12 11 10 14 14 C 1.38710 * 119.94311 * 0.57011 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.72143 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.08991 * 109.47738 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47103 * 300.00115 * 1 2 3 29 29 H 1.09002 * 109.47174 * 59.99651 * 1 2 3 30 30 H 1.08997 * 109.46785 * 239.99797 * 2 1 3 31 31 H 1.09003 * 109.46692 * 120.00134 * 2 1 3 32 32 H 1.08997 * 109.47319 * 60.00528 * 6 3 2 33 33 H 1.08996 * 109.47258 * 299.99589 * 6 3 2 34 34 H 1.08996 * 109.47046 * 59.99624 * 7 6 3 35 35 H 1.09006 * 109.46798 * 299.99892 * 7 6 3 36 36 H 1.00901 * 111.00271 * 303.95429 * 8 7 6 37 37 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 38 38 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 39 39 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 40 40 H 1.08006 * 119.97154 * 179.97438 * 12 11 10 41 41 H 1.08006 * 120.03137 * 180.29323 * 13 12 11 42 42 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 43 43 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 44 44 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 45 45 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 46 46 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 47 47 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9330 1.4718 -0.0008 7 6 4.6282 2.8348 -0.0002 8 7 6.0844 2.6417 -0.0003 9 6 6.7866 3.9320 -0.0003 10 6 8.2746 3.6942 0.0003 11 6 8.9563 3.5850 1.1984 12 6 10.3215 3.3673 1.2023 13 6 11.0072 3.2518 0.0084 14 6 10.3266 3.3662 -1.1948 15 8 10.9997 3.2586 -2.3704 16 6 12.4088 3.0336 -2.2931 17 6 12.9887 2.9402 -3.7058 18 6 14.4746 2.7022 -3.6242 19 1 14.9569 2.6249 -2.6610 20 6 15.2180 2.5822 -4.7791 21 7 14.6305 2.6759 -5.9520 22 14 17.0599 2.2880 -4.6780 23 1 17.4732 2.2228 -3.2531 24 1 17.3940 1.0060 -5.3489 25 1 17.7766 3.4005 -5.3513 26 6 8.9565 3.5850 -1.1960 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2253 0.9148 -0.8910 33 1 4.2260 0.9146 0.8890 34 1 4.3358 3.3914 0.8901 35 1 4.3351 3.3924 -0.8899 36 1 6.3738 2.0723 0.7809 37 1 6.5089 4.4968 0.8897 38 1 6.5089 4.4968 -0.8903 39 1 8.4213 3.6698 2.1328 40 1 10.8518 3.2828 2.1394 41 1 12.0730 3.0770 0.0119 42 1 12.8800 3.8596 -1.7603 43 1 12.5992 2.1019 -1.7602 44 1 12.5175 2.1139 -4.2381 45 1 12.7983 3.8715 -4.2391 46 1 15.1535 2.5911 -6.7646 47 1 8.4236 3.6704 -2.1315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069172857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = -124.148999 kcal Electronic energy + Delta-G solvation = -25755.099354 eV Core-core repulsion = 21835.954705 eV Total energy + Delta-G solvation = -3919.144649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08550 -38.98778 -38.01019 -37.32302 -37.01786 -35.47313 -33.98740 -33.37552 -32.58362 -30.98675 -30.29424 -27.13868 -26.26944 -25.04745 -23.56264 -23.33521 -23.12485 -21.56633 -19.80697 -19.13293 -18.18121 -17.95299 -17.49478 -17.06437 -16.94835 -16.90916 -16.85555 -16.56076 -16.37421 -15.69042 -15.36741 -15.11218 -14.85644 -14.47819 -14.34498 -14.25700 -14.06600 -13.99908 -13.64517 -13.39600 -13.15000 -13.09665 -13.04944 -13.00537 -12.84220 -12.62284 -12.56539 -12.47315 -12.38381 -12.31774 -11.94431 -11.77609 -11.60055 -11.55385 -11.37082 -11.21687 -10.63467 -9.85386 -9.49369 -9.09473 -8.27274 -6.41185 -0.98789 0.33552 0.53251 1.40877 1.41898 1.55392 1.85366 2.26956 2.50644 2.58848 2.79438 3.07236 3.10198 3.37757 3.62522 3.77415 3.78417 3.87810 3.92626 4.01095 4.14045 4.23075 4.26143 4.30124 4.38393 4.41553 4.42458 4.52993 4.60046 4.68050 4.72921 4.76002 4.82265 4.85723 4.89423 5.10290 5.13335 5.31146 5.44111 5.45826 5.52236 5.59727 5.67973 5.80989 5.94126 6.07132 6.37313 6.57736 6.73872 7.29163 8.86066 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.001531 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.585066 B =18279.853051 C =19183.145752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.593 4.593 3 S 2.417 3.583 4 O -0.980 6.980 5 O -0.985 6.985 6 C -0.602 4.602 7 C 0.058 3.942 8 N -0.684 5.684 9 C 0.099 3.901 10 C -0.046 4.046 11 C -0.151 4.151 12 C -0.077 4.077 13 C -0.222 4.222 14 C 0.105 3.895 15 O -0.343 6.343 16 C 0.086 3.914 17 C 0.027 3.973 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.977 3.023 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.152 4.152 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.355 0.645 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.126 0.874 42 H 0.059 0.941 43 H 0.060 0.940 44 H -0.002 1.002 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.063 -5.652 20.029 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.725 4.725 3 S 2.604 3.396 4 O -0.977 6.977 5 O -0.982 6.982 6 C -0.732 4.732 7 C -0.072 4.072 8 N -0.317 5.317 9 C -0.029 4.029 10 C -0.047 4.047 11 C -0.169 4.169 12 C -0.095 4.095 13 C -0.241 4.241 14 C 0.059 3.941 15 O -0.258 6.258 16 C 0.011 3.989 17 C -0.010 4.010 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.801 3.199 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.203 1.203 26 C -0.172 4.172 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.176 0.824 31 H 0.181 0.819 32 H 0.175 0.825 33 H 0.181 0.819 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.174 0.826 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.171 0.829 40 H 0.170 0.830 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.076 0.924 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.570 -4.895 18.967 33.010 hybrid contribution 1.501 -0.455 0.169 1.577 sum -25.070 -5.350 19.136 31.989 Atomic orbital electron populations 1.21701 0.91087 1.06062 1.03430 1.30033 1.06832 1.21160 1.14484 1.07852 0.78568 0.79611 0.73591 1.93538 1.82085 1.75428 1.46687 1.93547 1.82139 1.75513 1.46970 1.30297 1.21933 1.06343 1.14606 1.21696 0.88761 0.94309 1.02473 1.60416 1.03807 1.16082 1.51378 1.20903 0.88131 0.91160 1.02727 1.19614 0.95491 0.97754 0.91816 1.21226 0.94254 1.03475 0.97982 1.21229 0.94707 0.96221 0.97345 1.21514 1.01123 1.08751 0.92664 1.19535 0.92762 0.96429 0.85344 1.86087 1.23547 1.86662 1.29469 1.22844 0.76277 0.99817 0.99937 1.18975 0.95208 0.95947 0.90873 1.21432 0.92735 1.50590 0.93644 0.91067 1.26054 1.04579 0.94387 0.94698 1.70135 1.38239 1.50306 0.98328 0.85217 0.77874 0.77871 0.78965 1.18074 1.20216 1.20257 1.20416 0.90696 1.06482 0.99569 0.88055 0.91162 0.91480 0.82392 0.81926 0.82511 0.81891 0.92701 0.90172 0.82590 0.91573 0.90110 0.82933 0.83028 0.85597 0.92248 0.92212 0.98362 0.98396 0.92450 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.92 71.98 0.71 -0.30 16 2 C -0.59 -1.80 6.52 71.98 0.47 -1.33 16 3 S 2.42 25.99 4.72 -56.49 -0.27 25.72 16 4 O -0.98 -17.76 18.10 -127.37 -2.31 -20.07 16 5 O -0.98 -19.76 18.10 -127.37 -2.30 -22.06 16 6 C -0.60 -4.06 6.07 71.98 0.44 -3.62 16 7 C 0.06 0.74 5.69 86.31 0.49 1.24 16 8 N -0.68 -10.39 6.49 -517.93 -3.36 -13.75 16 9 C 0.10 1.69 5.81 85.56 0.50 2.19 16 10 C -0.05 -1.04 5.39 -19.88 -0.11 -1.14 16 11 C -0.15 -2.90 9.70 22.28 0.22 -2.69 16 12 C -0.08 -1.71 10.04 22.25 0.22 -1.48 16 13 C -0.22 -6.64 9.04 22.36 0.20 -6.44 16 14 C 0.10 3.70 6.69 22.50 0.15 3.85 16 15 O -0.34 -14.92 10.14 -92.43 -0.94 -15.86 16 16 C 0.09 3.81 4.68 71.98 0.34 4.14 16 17 C 0.03 1.51 5.34 29.85 0.16 1.67 16 18 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 19 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 20 C 0.00 0.08 5.46 84.65 0.46 0.54 16 21 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 22 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 C -0.15 -4.62 9.64 22.37 0.22 -4.41 16 27 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.16 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.35 4.20 8.72 -89.69 -0.78 3.42 16 37 H 0.07 0.85 8.08 -2.38 -0.02 0.83 16 38 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.13 3.77 6.30 -2.91 -0.02 3.75 16 42 H 0.06 2.48 7.67 -2.39 -0.02 2.46 16 43 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -83.13 407.08 -1.99 -85.12 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.17 Total: 10.55 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 4.70 Total: -38.58 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -3.08 Total: -70.38 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -5.55 Total: -57.99 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 25.99 SS G_CDS: -0.27 Total: 25.72 kcal Total: -83.13 -1.99 -85.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069172857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.029 kcal (2) G-P(sol) polarization free energy of solvation -83.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds