Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46775 * 2 1 4 4 C 1.46499 * 120.00231 * 265.79867 * 3 2 1 5 5 C 1.50700 * 109.47437 * 270.00558 * 4 3 2 6 6 H 1.08006 * 119.99785 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00438 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99749 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47050 * 90.00134 * 9 7 5 11 11 H 1.48504 * 109.47105 * 210.00181 * 9 7 5 12 12 H 1.48495 * 109.47124 * 330.00054 * 9 7 5 13 13 C 1.34777 * 120.00041 * 85.80536 * 3 2 1 14 14 O 1.21554 * 120.00004 * 174.87224 * 13 3 2 15 15 C 1.47887 * 119.99951 * 354.86738 * 13 3 2 16 16 C 1.41573 * 119.89153 * 173.48037 * 15 13 3 17 17 C 1.36330 * 118.23566 * 180.02562 * 16 15 13 18 18 C 1.41266 * 117.93364 * 359.97438 * 17 16 15 19 19 O 1.21983 * 120.22408 * 179.97438 * 18 17 16 20 20 N 1.34611 * 119.55061 * 359.97438 * 18 17 16 21 21 C 1.46503 * 119.09981 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47125 * 83.29901 * 21 20 18 23 23 C 1.38234 * 120.00245 * 95.71599 * 22 21 20 24 24 C 1.38231 * 119.99688 * 179.72919 * 23 22 21 25 25 C 1.38233 * 120.00494 * 0.24682 * 24 23 22 26 26 C 1.38232 * 119.99788 * 0.02562 * 25 24 23 27 27 C 1.38237 * 120.00071 * 0.02562 * 26 25 24 28 28 N 1.28388 * 121.79968 * 0.26620 * 20 18 17 29 29 H 1.09003 * 109.46908 * 177.48712 * 1 2 3 30 30 H 1.09000 * 109.47365 * 297.48546 * 1 2 3 31 31 H 1.08996 * 109.47363 * 57.48772 * 1 2 3 32 32 H 1.09006 * 109.46614 * 239.99956 * 2 1 3 33 33 H 1.08995 * 109.46958 * 120.00383 * 2 1 3 34 34 H 1.09008 * 109.46999 * 29.99902 * 4 3 2 35 35 H 1.08994 * 109.47803 * 150.00234 * 4 3 2 36 36 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.07995 * 120.88326 * 0.02562 * 16 15 13 38 38 H 1.08001 * 121.03500 * 179.97438 * 17 16 15 39 39 H 1.09006 * 109.47221 * 323.29389 * 21 20 18 40 40 H 1.08996 * 109.47180 * 203.29839 * 21 20 18 41 41 H 1.07998 * 119.99737 * 359.97438 * 23 22 21 42 42 H 1.08008 * 119.99581 * 180.27878 * 24 23 22 43 43 H 1.07999 * 120.00045 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.00223 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.99952 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 2.0409 -1.2653 5 6 3.7997 1.7948 -1.5952 6 1 4.4126 1.2054 -0.9291 7 6 4.3435 2.3209 -2.7477 8 7 3.5968 3.0373 -3.5595 9 14 6.1407 2.0164 -3.1562 10 1 6.2616 0.7750 -3.9621 11 1 6.6732 3.1647 -3.9330 12 1 6.9159 1.8677 -1.8985 13 6 2.1624 2.0450 1.1641 14 8 2.6546 3.1564 1.1730 15 6 1.7215 1.4213 2.4304 16 6 1.9981 2.0580 3.6643 17 6 1.5767 1.4530 4.8110 18 6 0.8878 0.2251 4.6967 19 8 0.4925 -0.3525 5.6958 20 7 0.6704 -0.3033 3.4779 21 6 -0.0446 -1.5775 3.3709 22 6 -1.5297 -1.3256 3.4167 23 6 -2.2490 -1.2174 2.2412 24 6 -3.6121 -0.9918 2.2834 25 6 -4.2552 -0.8694 3.5010 26 6 -3.5349 -0.9720 4.6763 27 6 -2.1715 -1.1965 4.6342 28 7 1.0774 0.2762 2.4069 29 1 -0.3633 -1.0267 -0.0451 30 1 -0.3634 0.4743 0.9116 31 1 -0.3634 0.5523 -0.8666 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.7230 1.6377 -2.0606 35 1 2.1754 3.1128 -1.1730 36 1 3.9794 3.4078 -4.3702 37 1 2.5288 2.9980 3.6963 38 1 1.7638 1.8987 5.7768 39 1 0.2400 -2.2247 4.2006 40 1 0.2130 -2.0607 2.4284 41 1 -1.7466 -1.3130 1.2900 42 1 -4.1749 -0.9118 1.3650 43 1 -5.3202 -0.6936 3.5339 44 1 -4.0373 -0.8768 5.6276 45 1 -1.6089 -1.2770 5.5525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = 46.023147 kcal Electronic energy + Delta-G solvation = -30030.450632 eV Core-core repulsion = 26015.534001 eV Total energy + Delta-G solvation = -4014.916631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26011 -39.50018 -39.08025 -37.60529 -35.64171 -35.07034 -32.89616 -32.30101 -31.17818 -31.08504 -30.04807 -27.82019 -26.99067 -25.16360 -24.00724 -23.17475 -22.94173 -22.54766 -21.55413 -19.78402 -18.35500 -17.52265 -17.32875 -16.74629 -16.45130 -16.35508 -15.84893 -15.48497 -15.23537 -15.21135 -14.43804 -14.42881 -14.19844 -13.75034 -13.59058 -13.44270 -13.18944 -13.07959 -12.92744 -12.82891 -12.53605 -12.31717 -12.00841 -11.75700 -11.48648 -11.37051 -11.23601 -11.11056 -10.90712 -10.71223 -10.55465 -10.36575 -10.16330 -9.86458 -9.66988 -9.24525 -9.12576 -9.08112 -8.55458 -8.46658 -7.76449 -6.07760 -4.12515 0.41673 0.93588 1.20142 1.23948 2.16918 3.03618 3.28766 3.35761 3.39602 3.56859 3.61878 3.78452 3.99734 4.40602 4.42042 4.55334 4.67129 4.74287 4.78935 4.86011 4.92308 4.99695 5.13933 5.27059 5.30474 5.41187 5.47471 5.52023 5.62157 5.70312 5.74094 5.77633 5.83306 5.89805 5.97117 6.17987 6.23549 6.28055 6.30374 6.34709 6.62660 6.75898 6.98198 7.34865 7.43268 7.48473 7.87433 7.94799 8.17269 8.26707 8.76683 8.94768 9.52541 11.00351 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.003184 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.330531 B = 8790.805691 C = 9788.849761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.111 3.889 3 N -0.572 5.572 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.569 3.431 14 O -0.526 6.526 15 C 0.024 3.976 16 C -0.024 4.024 17 C -0.203 4.203 18 C 0.482 3.518 19 O -0.535 6.535 20 N -0.341 5.341 21 C 0.154 3.846 22 C -0.120 4.120 23 C -0.095 4.095 24 C -0.127 4.127 25 C -0.109 4.109 26 C -0.129 4.129 27 C -0.091 4.091 28 N -0.170 5.170 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -10.293 14.061 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.302 5.302 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.352 3.648 14 O -0.402 6.402 15 C -0.147 4.147 16 C -0.048 4.048 17 C -0.232 4.232 18 C 0.282 3.718 19 O -0.414 6.414 20 N -0.161 5.161 21 C 0.035 3.965 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.128 4.128 26 C -0.147 4.147 27 C -0.109 4.109 28 N 0.000 5.000 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.155 -10.593 13.876 21.859 hybrid contribution 1.166 0.417 0.282 1.270 sum -11.989 -10.176 14.158 21.160 Atomic orbital electron populations 1.22273 0.96805 1.00909 1.01929 1.21657 0.93757 0.83410 1.02535 1.48196 1.61166 1.13409 1.07477 1.19395 0.96002 0.94082 0.77774 1.21401 0.95463 1.33210 1.06453 0.92320 1.24920 0.98157 0.94863 0.96064 1.69927 1.36100 1.34510 1.12773 0.86494 0.84816 0.77708 0.78396 1.20653 1.21091 1.19856 1.17226 0.80192 0.85483 0.81852 1.90807 1.44626 1.19379 1.85345 1.22340 1.02677 0.92604 0.97038 1.22303 0.92366 0.99747 0.90338 1.22625 1.03577 0.96145 1.00903 1.18068 0.82459 0.87801 0.83487 1.90890 1.53126 1.62843 1.34570 1.47094 1.44434 1.21006 1.03582 1.20866 0.87741 0.81934 1.05965 1.19886 0.94357 1.03911 0.93977 1.21326 0.94346 0.97636 0.98063 1.21174 0.94651 1.00605 0.98053 1.21253 0.99966 0.98851 0.92701 1.21184 0.94270 1.00866 0.98374 1.21394 0.94666 0.96796 0.98060 1.71974 1.05808 1.08787 1.13418 0.92550 0.92253 0.92620 0.90289 0.90200 0.94498 0.93708 0.92669 0.82038 0.81796 0.87107 0.86964 0.85053 0.85749 0.86063 0.85999 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.75 37.16 0.32 -1.77 16 2 C 0.11 1.74 5.67 -4.04 -0.02 1.72 16 3 N -0.57 -11.62 2.46 -176.16 -0.43 -12.05 16 4 C 0.25 6.13 5.10 -5.19 -0.03 6.11 16 5 C -0.53 -14.40 9.39 -34.44 -0.32 -14.73 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.57 11.43 7.62 -12.31 -0.09 11.34 16 14 O -0.53 -12.42 16.03 5.32 0.09 -12.34 16 15 C 0.02 0.38 6.63 -82.83 -0.55 -0.17 16 16 C -0.02 -0.32 9.67 -39.00 -0.38 -0.70 16 17 C -0.20 -2.48 10.11 -39.12 -0.40 -2.87 16 18 C 0.48 6.55 7.35 -15.18 -0.11 6.43 16 19 O -0.54 -7.98 14.73 4.93 0.07 -7.91 16 20 N -0.34 -4.27 3.23 -64.52 -0.21 -4.47 16 21 C 0.15 1.54 5.66 -5.19 -0.03 1.51 16 22 C -0.12 -1.26 5.39 -104.62 -0.56 -1.82 16 23 C -0.10 -0.94 9.54 -39.59 -0.38 -1.32 16 24 C -0.13 -1.17 10.05 -39.59 -0.40 -1.57 16 25 C -0.11 -0.98 10.05 -39.59 -0.40 -1.38 16 26 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 27 C -0.09 -0.98 9.24 -39.58 -0.37 -1.35 16 28 N -0.17 -2.33 4.51 33.41 0.15 -2.18 16 29 H 0.06 0.56 6.87 -51.93 -0.36 0.21 16 30 H 0.06 0.80 5.95 -51.93 -0.31 0.49 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 33 H 0.08 1.16 5.67 -51.93 -0.29 0.86 16 34 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 35 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.16 2.00 7.73 -52.49 -0.41 1.60 16 38 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.03 7.56 -51.93 -0.39 0.64 16 40 H 0.11 0.90 8.01 -51.93 -0.42 0.49 16 41 H 0.13 1.17 5.63 -52.49 -0.30 0.87 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.14 1.55 6.49 -52.49 -0.34 1.21 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -32.68 374.85 -8.87 -41.54 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.70 Total: 1.08 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -4.20 Total: -0.58 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.25 Total: -43.79 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.16 Total: -20.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.68 -8.87 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.566 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds