Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46775 * 2 1 4 4 C 1.46499 * 120.00231 * 265.79867 * 3 2 1 5 5 C 1.50700 * 109.47437 * 270.00558 * 4 3 2 6 6 H 1.08006 * 119.99785 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00438 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99749 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47050 * 90.00134 * 9 7 5 11 11 H 1.48504 * 109.47105 * 210.00181 * 9 7 5 12 12 H 1.48495 * 109.47124 * 330.00054 * 9 7 5 13 13 C 1.34777 * 120.00041 * 85.80536 * 3 2 1 14 14 O 1.21554 * 120.00004 * 174.87224 * 13 3 2 15 15 C 1.47887 * 119.99951 * 354.86738 * 13 3 2 16 16 C 1.41573 * 119.89153 * 173.48037 * 15 13 3 17 17 C 1.36330 * 118.23566 * 180.02562 * 16 15 13 18 18 C 1.41266 * 117.93364 * 359.97438 * 17 16 15 19 19 O 1.21983 * 120.22408 * 179.97438 * 18 17 16 20 20 N 1.34611 * 119.55061 * 359.97438 * 18 17 16 21 21 C 1.46503 * 119.09981 * 179.97438 * 20 18 17 22 22 C 1.50697 * 109.47125 * 83.29901 * 21 20 18 23 23 C 1.38234 * 120.00245 * 95.71599 * 22 21 20 24 24 C 1.38231 * 119.99688 * 179.72919 * 23 22 21 25 25 C 1.38233 * 120.00494 * 0.24682 * 24 23 22 26 26 C 1.38232 * 119.99788 * 0.02562 * 25 24 23 27 27 C 1.38237 * 120.00071 * 0.02562 * 26 25 24 28 28 N 1.28388 * 121.79968 * 0.26620 * 20 18 17 29 29 H 1.09003 * 109.46908 * 177.48712 * 1 2 3 30 30 H 1.09000 * 109.47365 * 297.48546 * 1 2 3 31 31 H 1.08996 * 109.47363 * 57.48772 * 1 2 3 32 32 H 1.09006 * 109.46614 * 239.99956 * 2 1 3 33 33 H 1.08995 * 109.46958 * 120.00383 * 2 1 3 34 34 H 1.09008 * 109.46999 * 29.99902 * 4 3 2 35 35 H 1.08994 * 109.47803 * 150.00234 * 4 3 2 36 36 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 37 37 H 1.07995 * 120.88326 * 0.02562 * 16 15 13 38 38 H 1.08001 * 121.03500 * 179.97438 * 17 16 15 39 39 H 1.09006 * 109.47221 * 323.29389 * 21 20 18 40 40 H 1.08996 * 109.47180 * 203.29839 * 21 20 18 41 41 H 1.07998 * 119.99737 * 359.97438 * 23 22 21 42 42 H 1.08008 * 119.99581 * 180.27878 * 24 23 22 43 43 H 1.07999 * 120.00045 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.00223 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.99952 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 2.0409 -1.2653 5 6 3.7997 1.7948 -1.5952 6 1 4.4126 1.2054 -0.9291 7 6 4.3435 2.3209 -2.7477 8 7 3.5968 3.0373 -3.5595 9 14 6.1407 2.0164 -3.1562 10 1 6.2616 0.7750 -3.9621 11 1 6.6732 3.1647 -3.9330 12 1 6.9159 1.8677 -1.8985 13 6 2.1624 2.0450 1.1641 14 8 2.6546 3.1564 1.1730 15 6 1.7215 1.4213 2.4304 16 6 1.9981 2.0580 3.6643 17 6 1.5767 1.4530 4.8110 18 6 0.8878 0.2251 4.6967 19 8 0.4925 -0.3525 5.6958 20 7 0.6704 -0.3033 3.4779 21 6 -0.0446 -1.5775 3.3709 22 6 -1.5297 -1.3256 3.4167 23 6 -2.2490 -1.2174 2.2412 24 6 -3.6121 -0.9918 2.2834 25 6 -4.2552 -0.8694 3.5010 26 6 -3.5349 -0.9720 4.6763 27 6 -2.1715 -1.1965 4.6342 28 7 1.0774 0.2762 2.4069 29 1 -0.3633 -1.0267 -0.0451 30 1 -0.3634 0.4743 0.9116 31 1 -0.3634 0.5523 -0.8666 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.7230 1.6377 -2.0606 35 1 2.1754 3.1128 -1.1730 36 1 3.9794 3.4078 -4.3702 37 1 2.5288 2.9980 3.6963 38 1 1.7638 1.8987 5.7768 39 1 0.2400 -2.2247 4.2006 40 1 0.2130 -2.0607 2.4284 41 1 -1.7466 -1.3130 1.2900 42 1 -4.1749 -0.9118 1.3650 43 1 -5.3202 -0.6936 3.5339 44 1 -4.0373 -0.8768 5.6276 45 1 -1.6089 -1.2770 5.5525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = 27.936371 kcal Electronic energy + Delta-G solvation = -30031.234934 eV Core-core repulsion = 26015.534001 eV Total energy + Delta-G solvation = -4015.700932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.35213 -40.80353 -40.02392 -38.80838 -37.15440 -36.16091 -34.89880 -33.21414 -32.36449 -31.88352 -31.36983 -29.31651 -28.24918 -26.40975 -25.23825 -24.58246 -24.31281 -23.39573 -22.38559 -21.19132 -19.48388 -18.83172 -18.48917 -18.23266 -17.84541 -17.36694 -17.12623 -16.91243 -16.27251 -16.03947 -16.01585 -15.88426 -15.39760 -15.03194 -14.56301 -14.39866 -14.30912 -14.26847 -14.22646 -13.86174 -13.57297 -13.52223 -13.29538 -13.20749 -13.04433 -12.78955 -12.56240 -12.38486 -12.28937 -12.11139 -11.89800 -11.75652 -11.67287 -11.41334 -11.14564 -10.68788 -10.60021 -9.85870 -9.83856 -9.67063 -9.44643 -8.19164 -6.32917 -0.65285 0.04083 0.16418 0.47194 1.18142 1.40267 1.42821 1.52941 1.78018 2.13168 2.41433 2.47368 2.82111 2.86184 3.11306 3.52784 3.59498 3.65053 3.71859 3.86305 4.11231 4.23899 4.25874 4.26612 4.40377 4.50519 4.53237 4.57161 4.60434 4.68132 4.72790 4.82699 4.90955 4.99484 5.03950 5.06257 5.08695 5.16858 5.25417 5.48540 5.53139 5.58553 5.59399 5.61377 5.84082 6.05421 6.08035 6.38116 6.62781 6.75561 6.84304 7.20750 7.39588 8.87944 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.003184 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.330531 B = 8790.805691 C = 9788.849761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.579 5.579 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.566 3.434 14 O -0.573 6.573 15 C 0.009 3.991 16 C -0.028 4.028 17 C -0.189 4.189 18 C 0.475 3.525 19 O -0.547 6.547 20 N -0.331 5.331 21 C 0.147 3.853 22 C -0.129 4.129 23 C -0.103 4.103 24 C -0.134 4.134 25 C -0.112 4.112 26 C -0.137 4.137 27 C -0.106 4.106 28 N -0.152 5.152 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.267 0.733 37 H 0.168 0.832 38 H 0.191 0.809 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -12.123 14.879 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.309 5.309 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.352 3.648 14 O -0.451 6.451 15 C -0.160 4.160 16 C -0.052 4.052 17 C -0.218 4.218 18 C 0.275 3.725 19 O -0.427 6.427 20 N -0.152 5.152 21 C 0.029 3.971 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.152 4.152 25 C -0.130 4.130 26 C -0.155 4.155 27 C -0.125 4.125 28 N 0.016 4.984 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.185 0.815 38 H 0.208 0.792 39 H 0.136 0.864 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.757 -12.467 14.706 23.684 hybrid contribution 1.208 0.906 0.090 1.513 sum -12.549 -11.561 14.796 22.584 Atomic orbital electron populations 1.22193 0.94466 1.03106 1.01093 1.21929 0.95617 0.80866 1.03139 1.48179 1.61454 1.15034 1.06223 1.18854 0.95031 0.92121 0.79810 1.21669 0.96574 1.33181 1.06538 0.92838 1.25778 1.02559 0.94503 0.95940 1.70038 1.38011 1.35309 1.13243 0.85463 0.79350 0.78134 0.78152 1.19002 1.20753 1.19821 1.17703 0.79217 0.84990 0.82940 1.90765 1.46624 1.21412 1.86338 1.21632 1.04825 0.93939 0.95612 1.22273 0.93061 1.00140 0.89708 1.22862 1.02108 0.95295 1.01531 1.18326 0.82481 0.88166 0.83555 1.90897 1.53583 1.63262 1.34945 1.47334 1.43476 1.21324 1.03052 1.21181 0.87498 0.80788 1.07605 1.19924 0.94423 1.04552 0.94155 1.21503 0.94812 0.97630 0.98188 1.21492 0.94702 0.99979 0.99014 1.21564 1.01166 0.97961 0.92340 1.21432 0.94018 1.00545 0.99505 1.21425 0.95337 0.97851 0.97861 1.71861 1.04700 1.07948 1.13871 0.88696 0.92542 0.94018 0.90734 0.88495 0.95158 0.97775 0.92410 0.81486 0.79177 0.86356 0.84669 0.84083 0.83971 0.83863 0.84578 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.75 71.98 0.63 -3.04 16 2 C 0.11 3.27 5.67 86.38 0.49 3.76 16 3 N -0.58 -24.05 2.46 -829.52 -2.04 -26.09 16 4 C 0.26 13.64 5.10 85.63 0.44 14.08 16 5 C -0.54 -30.30 9.39 25.60 0.24 -30.06 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 9 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.57 23.30 7.62 86.80 0.66 23.97 16 14 O -0.57 -28.28 16.03 -3.88 -0.06 -28.34 16 15 C 0.01 0.28 6.63 42.59 0.28 0.57 16 16 C -0.03 -0.74 9.67 22.65 0.22 -0.52 16 17 C -0.19 -4.26 10.11 22.57 0.23 -4.03 16 18 C 0.47 11.98 7.35 85.01 0.62 12.61 16 19 O -0.55 -15.35 14.73 -5.26 -0.08 -15.43 16 20 N -0.33 -7.62 3.23 -476.22 -1.54 -9.16 16 21 C 0.15 2.60 5.66 85.63 0.48 3.08 16 22 C -0.13 -2.45 5.39 -19.87 -0.11 -2.56 16 23 C -0.10 -1.78 9.54 22.27 0.21 -1.57 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 25 C -0.11 -1.74 10.05 22.27 0.22 -1.52 16 26 C -0.14 -2.39 10.05 22.27 0.22 -2.16 16 27 C -0.11 -2.15 9.24 22.27 0.21 -1.94 16 28 N -0.15 -3.94 4.51 -48.20 -0.22 -4.15 16 29 H 0.09 1.58 6.87 -2.39 -0.02 1.56 16 30 H 0.06 1.42 5.95 -2.39 -0.01 1.41 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 2.35 8.04 -2.38 -0.02 2.33 16 33 H 0.10 2.63 5.67 -2.39 -0.01 2.62 16 34 H 0.03 1.59 8.07 -2.38 -0.02 1.57 16 35 H 0.00 0.25 7.50 -2.39 -0.02 0.23 16 36 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.17 4.12 7.73 -2.91 -0.02 4.10 16 38 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 39 H 0.12 1.95 7.56 -2.38 -0.02 1.93 16 40 H 0.14 1.73 8.01 -2.39 -0.02 1.71 16 41 H 0.14 2.05 5.63 -2.91 -0.02 2.04 16 42 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.12 2.74 6.49 -2.91 -0.02 2.72 16 Total: -1.00 -72.46 374.85 5.14 -67.32 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.02 Total: 14.26 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.74 Total: 9.86 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -3.51 Total: -93.69 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.14 Total: -43.76 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.46 5.14 -67.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.259 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds