Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47163 * 180.02562 * 4 3 2 6 6 C 1.38265 * 119.99662 * 359.72866 * 5 4 3 7 7 C 1.38213 * 119.99497 * 179.74529 * 6 5 4 8 8 C 1.38255 * 120.00317 * 0.54539 * 7 6 5 9 9 C 1.38213 * 120.00076 * 359.70793 * 8 7 6 10 10 C 1.38205 * 120.00240 * 180.02562 * 5 4 3 11 11 C 1.50707 * 120.00086 * 0.02562 * 10 5 4 12 12 N 1.46495 * 109.47008 * 80.00027 * 11 10 5 13 13 S 1.65604 * 120.00191 * 165.00236 * 12 11 10 14 14 O 1.42097 * 104.27693 * 181.06659 * 13 12 11 15 15 O 1.42101 * 104.27341 * 308.92524 * 13 12 11 16 16 C 1.81404 * 104.44797 * 64.99631 * 13 12 11 17 17 C 1.52994 * 109.46787 * 180.02562 * 16 13 12 18 18 C 1.53009 * 109.46959 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.46948 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00327 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99466 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99996 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99586 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47259 * 90.00049 * 23 21 19 25 25 H 1.48506 * 109.46928 * 210.00316 * 23 21 19 26 26 H 1.48503 * 109.46983 * 329.99762 * 23 21 19 27 27 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 28 28 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 29 29 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 31 31 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 32 32 H 1.08997 * 109.47442 * 300.00036 * 4 3 2 33 33 H 1.08997 * 109.47171 * 60.00232 * 4 3 2 34 34 H 1.07992 * 120.00095 * 359.97438 * 6 5 4 35 35 H 1.08003 * 120.00030 * 180.27856 * 7 6 5 36 36 H 1.08005 * 119.99955 * 179.72307 * 8 7 6 37 37 H 1.07997 * 120.00166 * 179.97438 * 9 8 7 38 38 H 1.08997 * 109.46948 * 200.00083 * 11 10 5 39 39 H 1.08996 * 109.46937 * 320.00272 * 11 10 5 40 40 H 0.97002 * 120.00409 * 344.99720 * 12 11 10 41 41 H 1.08998 * 109.47226 * 300.00291 * 16 13 12 42 42 H 1.09002 * 109.46879 * 60.00237 * 16 13 12 43 43 H 1.08998 * 109.47352 * 300.00063 * 17 16 13 44 44 H 1.09002 * 109.47341 * 60.00369 * 17 16 13 45 45 H 1.08998 * 109.47206 * 300.00233 * 18 17 16 46 46 H 1.09002 * 109.46726 * 60.00074 * 18 17 16 47 47 H 0.97003 * 119.99616 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 6 2.8409 3.8928 -0.0045 7 6 3.1973 5.2282 0.0014 8 6 4.5324 5.5874 0.0006 9 6 5.5107 4.6111 0.0000 10 6 5.1541 3.2752 -0.0008 11 6 6.2209 2.2106 -0.0031 12 7 6.3957 1.6975 -1.3641 13 16 7.7342 0.7999 -1.7450 14 8 7.5772 0.5054 -3.1262 15 8 8.8252 1.5841 -1.2825 16 6 7.5666 -0.7075 -0.7497 17 6 8.7582 -1.6294 -1.0160 18 6 8.6172 -2.9006 -0.1760 19 6 9.7905 -3.8090 -0.4388 20 1 10.5600 -3.5096 -1.1350 21 6 9.8821 -5.0220 0.2103 22 7 8.9452 -5.3864 1.0583 23 14 11.3368 -6.1478 -0.1149 24 1 12.4285 -5.8347 0.8417 25 1 10.9170 -7.5617 0.0584 26 1 11.8213 -5.9420 -1.5035 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8341 0.9765 0.8891 33 1 3.8333 0.9768 -0.8908 34 1 1.7980 3.6122 -0.0091 35 1 2.4329 5.9911 0.0023 36 1 4.8108 6.6309 0.0007 37 1 6.5536 4.8916 -0.0011 38 1 7.1605 2.6371 0.3479 39 1 5.9226 1.3960 0.6568 40 1 5.7274 1.8834 -2.0422 41 1 7.5409 -0.4437 0.3076 42 1 6.6430 -1.2198 -1.0190 43 1 8.7843 -1.8932 -2.0733 44 1 9.6816 -1.1169 -0.7465 45 1 8.5913 -2.6364 0.8811 46 1 7.6937 -3.4133 -0.4452 47 1 9.0095 -6.2399 1.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104111064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = -116.393161 kcal Electronic energy + Delta-G solvation = -27238.858347 eV Core-core repulsion = 23320.050016 eV Total energy + Delta-G solvation = -3918.808330 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09333 -38.03338 -36.94299 -35.83682 -35.55962 -34.70691 -32.76594 -32.21726 -31.24978 -30.77647 -27.84650 -26.65662 -25.63183 -23.75912 -23.19007 -22.12978 -21.13189 -20.70289 -19.26597 -17.69223 -17.08444 -17.06763 -16.57526 -16.47690 -16.27076 -15.76354 -15.31216 -15.17050 -14.94625 -14.50760 -14.40483 -14.20986 -14.09686 -13.62194 -13.15169 -12.91550 -12.74815 -12.62277 -12.60011 -12.30771 -12.07177 -11.97988 -11.85800 -11.81155 -11.75766 -11.57952 -11.29683 -11.24765 -11.02981 -10.94365 -10.88020 -10.46228 -10.06410 -9.98549 -9.76391 -9.36004 -9.13966 -9.09012 -8.91315 -8.43317 -6.08452 -4.11426 0.37376 0.99936 1.13937 2.82634 3.27361 3.28765 3.34982 3.39041 3.50810 3.90244 4.27680 4.40274 4.41167 4.47680 4.68244 4.75781 4.79631 4.86875 4.94014 5.00821 5.08661 5.11024 5.12852 5.14173 5.21650 5.24190 5.28302 5.36895 5.50482 5.60724 5.62325 5.68276 5.79538 5.81845 5.84545 6.15906 6.23155 6.25844 6.30031 6.40814 6.70328 6.81359 6.84605 6.89464 7.53539 7.63314 7.89544 8.30003 8.94793 9.53476 11.02772 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011417 B = 0.002637 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.997886 B =10615.853971 C =12336.456872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.387 6.387 4 C 0.097 3.903 5 C -0.073 4.073 6 C -0.099 4.099 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.099 4.099 10 C -0.093 4.093 11 C 0.152 3.848 12 N -1.122 6.122 13 S 2.599 3.401 14 O -0.961 6.961 15 O -0.960 6.960 16 C -0.609 4.609 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.415 0.585 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 19.223 -0.232 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.307 6.307 4 C 0.021 3.979 5 C -0.074 4.074 6 C -0.117 4.117 7 C -0.135 4.135 8 C -0.141 4.141 9 C -0.118 4.118 10 C -0.094 4.094 11 C 0.026 3.974 12 N -0.880 5.880 13 S 2.695 3.305 14 O -0.952 6.952 15 O -0.950 6.950 16 C -0.741 4.741 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.249 0.751 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.854 19.476 -0.590 25.120 hybrid contribution 0.176 -1.203 0.166 1.227 sum -15.678 18.273 -0.424 24.081 Atomic orbital electron populations 1.21738 0.93618 1.02437 1.02980 1.22514 0.95649 0.83317 1.00683 1.87815 1.20408 1.26856 1.95584 1.21293 0.81793 0.93398 1.01395 1.19553 0.92710 0.94577 1.00515 1.21003 0.99993 0.91980 0.98708 1.21229 0.96269 0.96221 0.99743 1.21183 0.93007 0.99457 1.00433 1.21094 0.99978 0.91789 0.98922 1.19500 0.92783 0.94477 1.02654 1.20215 0.98560 0.95341 0.83261 1.55815 1.43642 1.70184 1.18344 1.05358 0.73286 0.76527 0.75281 1.93584 1.85311 1.85666 1.30614 1.93568 1.51696 1.66940 1.82821 1.30554 1.09858 1.18600 1.15105 1.21505 0.92708 0.97958 1.02373 1.19060 0.97558 0.89540 0.94564 1.21255 1.07468 1.02490 1.25257 0.92358 1.25018 0.96347 0.97972 0.95022 1.69955 1.33514 1.22131 1.27856 0.86554 0.82618 0.79840 0.78801 1.20547 1.21168 1.19735 0.91906 0.91903 0.90932 0.92977 0.92978 0.91422 0.91399 0.84909 0.85985 0.85887 0.85343 0.88957 0.90754 0.75073 0.85469 0.85319 0.91546 0.91508 0.96128 0.96155 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.44 6.66 37.16 0.25 0.69 16 3 O -0.39 -3.74 8.82 -35.23 -0.31 -4.05 16 4 C 0.10 0.88 5.17 36.00 0.19 1.07 16 5 C -0.07 -0.69 5.88 -104.62 -0.62 -1.31 16 6 C -0.10 -0.91 9.38 -39.58 -0.37 -1.28 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 8 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 9 C -0.10 -0.89 9.67 -39.58 -0.38 -1.27 16 10 C -0.09 -0.87 5.28 -104.62 -0.55 -1.42 16 11 C 0.15 1.42 5.67 -5.19 -0.03 1.39 16 12 N -1.12 -11.72 5.68 -11.66 -0.07 -11.79 16 13 S 2.60 36.65 5.46 -107.50 -0.59 36.06 16 14 O -0.96 -16.54 18.08 -57.54 -1.04 -17.58 16 15 O -0.96 -16.29 17.50 -57.54 -1.01 -17.30 16 16 C -0.61 -8.86 6.07 37.15 0.23 -8.64 16 17 C -0.11 -2.09 5.16 -26.73 -0.14 -2.23 16 18 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 19 C -0.53 -14.66 9.11 -34.44 -0.31 -14.98 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 7.55 -51.93 -0.39 0.17 16 33 H 0.07 0.58 7.92 -51.93 -0.41 0.16 16 34 H 0.13 1.19 7.01 -52.49 -0.37 0.82 16 35 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 1.01 8.04 -52.49 -0.42 0.59 16 38 H 0.09 0.86 7.56 -51.93 -0.39 0.47 16 39 H 0.07 0.57 7.06 -51.93 -0.37 0.21 16 40 H 0.42 3.87 8.59 -34.47 -0.30 3.58 16 41 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.13 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -35.21 403.98 -11.28 -46.50 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.69 Total: 0.41 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -2.39 Total: -29.17 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.67 Total: -37.35 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -2.36 Total: -38.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 36.65 SS G_CDS: -0.59 Total: 36.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.21 -11.28 -46.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104111064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.896 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds