Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99943 * 2 1 4 4 C 1.52995 * 109.46748 * 274.99533 * 3 2 1 5 5 C 1.53001 * 109.47181 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47386 * 180.02562 * 5 4 3 7 7 C 1.35898 * 116.99694 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.05254 * 179.97438 * 7 6 5 9 9 C 1.38144 * 119.94607 * 179.97438 * 8 7 6 10 10 C 1.38266 * 120.05233 * 0.02562 * 9 8 7 11 11 C 1.38269 * 120.11595 * 359.95530 * 10 9 8 12 12 C 1.38142 * 120.04935 * 0.04230 * 11 10 9 13 13 S 1.65599 * 119.99945 * 179.97438 * 2 1 3 14 14 O 1.42100 * 104.27256 * 26.07707 * 13 2 1 15 15 O 1.42101 * 104.27639 * 153.92940 * 13 2 1 16 16 C 1.81395 * 104.45172 * 270.00286 * 13 2 1 17 17 C 1.53002 * 109.46917 * 179.97438 * 16 13 2 18 18 C 1.53008 * 109.46916 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.46848 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00074 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99619 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00164 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99584 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47350 * 60.00230 * 23 21 19 25 25 H 1.48502 * 109.46954 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47396 * 299.99804 * 23 21 19 27 27 H 1.08998 * 109.47043 * 90.00044 * 1 2 3 28 28 H 1.08998 * 109.47379 * 210.00524 * 1 2 3 29 29 H 1.09008 * 109.47210 * 330.00711 * 1 2 3 30 30 H 1.08999 * 109.46978 * 154.99547 * 3 2 1 31 31 H 1.08993 * 109.47175 * 34.99464 * 3 2 1 32 32 H 1.08999 * 109.47370 * 60.00254 * 4 3 2 33 33 H 1.09006 * 109.47017 * 300.00096 * 4 3 2 34 34 H 1.08999 * 109.46920 * 59.99785 * 5 4 3 35 35 H 1.08998 * 109.47220 * 300.00155 * 5 4 3 36 36 H 1.08002 * 120.02704 * 359.70561 * 8 7 6 37 37 H 1.08001 * 119.97447 * 179.97438 * 9 8 7 38 38 H 1.08000 * 119.94089 * 179.97438 * 10 9 8 39 39 H 1.07992 * 119.97577 * 180.02562 * 11 10 9 40 40 H 1.08005 * 120.02748 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47323 * 300.00055 * 16 13 2 42 42 H 1.09000 * 109.46981 * 60.00031 * 16 13 2 43 43 H 1.08994 * 109.47502 * 300.00353 * 17 16 13 44 44 H 1.09000 * 109.46937 * 60.00412 * 17 16 13 45 45 H 1.09004 * 109.46600 * 300.00314 * 18 17 16 46 46 H 1.09000 * 109.47150 * 60.00335 * 18 17 16 47 47 H 0.97001 * 120.00104 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3437 1.7732 -1.4370 5 6 3.1092 3.0979 -1.4372 6 8 3.2452 3.5693 -2.7793 7 6 3.9063 4.7434 -2.9568 8 6 4.0754 5.2594 -4.2334 9 6 4.7473 6.4533 -4.4112 10 6 5.2515 7.1335 -3.3181 11 6 5.0840 6.6216 -2.0447 12 6 4.4128 5.4281 -1.8617 13 16 2.2930 -1.4341 0.0006 14 8 1.3969 -2.3563 -0.6043 15 8 3.5395 -1.1194 -0.6047 16 6 2.5192 -1.8254 1.7574 17 6 3.2807 -3.1457 1.8918 18 6 3.4710 -3.4761 3.3736 19 6 4.2216 -4.7761 3.5060 20 1 4.5323 -5.3128 2.6217 21 6 4.5127 -5.2799 4.7560 22 7 4.1358 -4.6256 5.8328 23 14 5.4425 -6.8917 4.9201 24 1 6.7697 -6.7664 4.2658 25 1 5.6284 -7.2117 6.3582 26 1 4.6691 -7.9780 4.2667 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8901 0.5138 30 1 3.1857 1.1178 0.4344 31 1 1.6501 2.0043 0.5893 32 1 1.3554 1.9242 -1.8714 33 1 2.8911 1.0375 -2.0264 34 1 4.0974 2.9465 -1.0029 35 1 2.5622 3.8337 -0.8477 36 1 3.6859 4.7260 -5.0879 37 1 4.8796 6.8552 -5.4048 38 1 5.7768 8.0665 -3.4592 39 1 5.4783 7.1550 -1.1925 40 1 4.2825 5.0283 -0.8669 41 1 3.0865 -1.0279 2.2371 42 1 1.5450 -1.9178 2.2374 43 1 2.7132 -3.9430 1.4121 44 1 4.2550 -3.0537 1.4116 45 1 4.0385 -2.6787 3.8536 46 1 2.4966 -3.5682 3.8534 47 1 4.3402 -4.9801 6.7122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104111721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = -99.794412 kcal Electronic energy + Delta-G solvation = -26496.572030 eV Core-core repulsion = 22578.483475 eV Total energy + Delta-G solvation = -3918.088555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40092 -37.96617 -37.04375 -36.83871 -35.74756 -34.69375 -32.71401 -32.20712 -31.28981 -30.00409 -27.84435 -27.38438 -25.13219 -23.69406 -23.14718 -22.43449 -21.52007 -20.59389 -18.92102 -18.47537 -17.62193 -16.77281 -16.63583 -16.38407 -16.19875 -15.98953 -15.76811 -14.98486 -14.81871 -14.53122 -14.27671 -14.16306 -14.08339 -13.78012 -13.52950 -13.04540 -12.69673 -12.62051 -12.57060 -12.30983 -12.01577 -11.97207 -11.92528 -11.88715 -11.80829 -11.54699 -11.42304 -11.23845 -11.07566 -10.91329 -10.90190 -10.83908 -10.45295 -9.97658 -9.58647 -9.34858 -9.29009 -9.01699 -8.52424 -8.42388 -6.07543 -4.10772 0.37313 0.99621 1.12034 2.59507 2.91990 3.30959 3.34823 3.38078 3.46143 3.96725 4.24364 4.35371 4.41286 4.46295 4.53552 4.62200 4.73265 4.78618 4.85607 4.98387 5.03498 5.04685 5.11246 5.14321 5.17351 5.25258 5.28836 5.32025 5.37055 5.56078 5.62265 5.66145 5.83008 5.88779 5.90505 6.00244 6.07042 6.19387 6.21446 6.37992 6.41590 6.44720 6.84104 7.12088 7.54047 7.63933 7.90126 8.30562 8.95147 9.53985 11.03567 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.001858 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.099147 B =15066.537405 C =15996.707901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.007 6.007 3 C 0.130 3.870 4 C -0.141 4.141 5 C 0.062 3.938 6 O -0.314 6.314 7 C 0.133 3.867 8 C -0.155 4.155 9 C -0.082 4.082 10 C -0.163 4.163 11 C -0.080 4.080 12 C -0.210 4.210 13 S 2.596 3.404 14 O -0.957 6.957 15 O -0.956 6.956 16 C -0.608 4.608 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 24.034 -15.077 28.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.843 5.843 3 C 0.004 3.996 4 C -0.181 4.181 5 C -0.014 4.014 6 O -0.227 6.227 7 C 0.087 3.913 8 C -0.174 4.174 9 C -0.100 4.100 10 C -0.181 4.181 11 C -0.098 4.098 12 C -0.229 4.229 13 S 2.692 3.308 14 O -0.948 6.948 15 O -0.947 6.947 16 C -0.740 4.740 17 C -0.146 4.146 18 C -0.007 4.007 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.723 3.277 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.693 23.445 -15.807 28.663 hybrid contribution 0.417 -0.551 1.174 1.363 sum -4.276 22.894 -14.633 27.505 Atomic orbital electron populations 1.21464 0.78329 1.03034 1.02279 1.57629 1.15219 1.21259 1.90211 1.21070 0.97152 0.85653 0.95718 1.22006 1.01603 0.95634 0.98821 1.22755 1.00857 0.95972 0.81785 1.86073 1.71310 1.35307 1.30017 1.19065 0.92374 0.85617 0.94206 1.20487 1.04140 0.97707 0.95033 1.20979 0.96012 0.93864 0.99120 1.21074 1.03201 1.01147 0.92687 1.20977 0.96652 0.94783 0.97423 1.21320 1.04872 0.98299 0.98391 1.05631 0.73773 0.72751 0.78626 1.93570 1.64701 1.62026 1.74463 1.93570 1.43913 1.82766 1.74425 1.30582 1.10615 1.09484 1.23328 1.21510 0.98190 0.90595 1.04272 1.19061 0.97405 0.96782 0.87486 1.21218 1.36351 1.06643 0.92379 0.92403 1.25019 0.95892 0.97556 0.95884 1.69945 1.46684 1.39016 0.97770 0.86607 0.80430 0.83753 0.76950 1.20113 1.21235 1.20103 0.92473 0.90790 0.91094 0.89556 0.90028 0.90368 0.89517 0.91378 0.91802 0.85216 0.85430 0.85983 0.85783 0.85317 0.85499 0.85469 0.91581 0.91559 0.96137 0.96123 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.24 59.85 0.61 1.41 16 2 N -1.01 -10.62 3.12 -121.76 -0.38 -11.00 16 3 C 0.13 1.12 5.28 -4.04 -0.02 1.10 16 4 C -0.14 -1.32 5.91 -26.73 -0.16 -1.48 16 5 C 0.06 0.53 4.74 37.16 0.18 0.70 16 6 O -0.31 -3.39 10.14 -19.42 -0.20 -3.59 16 7 C 0.13 1.34 6.69 -39.22 -0.26 1.08 16 8 C -0.16 -1.41 9.99 -39.43 -0.39 -1.80 16 9 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 10 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 11 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 12 C -0.21 -1.82 9.04 -39.44 -0.36 -2.18 16 13 S 2.60 37.49 5.32 -107.50 -0.57 36.92 16 14 O -0.96 -16.57 17.09 -57.54 -0.98 -17.55 16 15 O -0.96 -16.14 16.75 -57.54 -0.96 -17.11 16 16 C -0.61 -9.11 6.18 37.16 0.23 -8.89 16 17 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 18 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 19 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 29 H 0.07 0.42 7.94 -51.92 -0.41 0.00 16 30 H 0.09 0.73 7.61 -51.93 -0.40 0.33 16 31 H 0.08 0.47 7.96 -51.93 -0.41 0.06 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 34 H 0.07 0.54 7.66 -51.93 -0.40 0.15 16 35 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.91 6.30 -52.48 -0.33 0.58 16 41 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.13 1.70 8.14 -51.92 -0.42 1.27 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -35.55 403.68 -11.13 -46.67 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.78 Total: -2.40 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -2.05 Total: -28.84 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.36 Total: -36.67 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -2.14 Total: -38.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 37.49 SS G_CDS: -0.57 Total: 36.92 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.55 -11.13 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104111721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.122 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds