Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 120.00313 * 2 1 4 4 C 1.39943 * 119.99791 * 180.02562 * 2 1 3 5 5 C 1.39402 * 120.41540 * 0.02562 * 4 2 1 6 6 C 1.38304 * 118.43040 * 180.02562 * 5 4 2 7 7 C 1.39016 * 119.17887 * 0.02562 * 6 5 4 8 8 N 1.39630 * 119.61779 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00837 * 174.88814 * 8 7 6 10 10 O 1.21289 * 119.99112 * 5.11252 * 9 8 7 11 11 C 1.50695 * 120.00844 * 185.11464 * 9 8 7 12 12 C 1.50705 * 109.47441 * 180.02562 * 11 9 8 13 13 C 1.38303 * 119.92773 * 269.72792 * 12 11 9 14 14 C 1.38096 * 120.06773 * 179.72582 * 13 12 11 15 15 C 1.38878 * 119.92787 * 0.56573 * 14 13 12 16 16 O 1.35753 * 120.06776 * 179.68126 * 15 14 13 17 17 C 1.34835 * 116.99856 * 185.54525 * 16 15 14 18 18 H 1.07998 * 120.00059 * 354.95090 * 17 16 15 19 19 C 1.38654 * 120.00130 * 174.94489 * 17 16 15 20 20 N 1.31563 * 119.99718 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00344 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46927 * 60.00077 * 21 19 17 23 23 H 1.48504 * 109.47572 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47196 * 300.00331 * 21 19 17 25 25 C 1.38884 * 119.86535 * 359.70536 * 15 14 13 26 26 C 1.38101 * 119.92497 * 0.02562 * 25 15 14 27 27 N 1.32297 * 120.77185 * 0.02562 * 7 6 5 28 28 C 1.31931 * 121.70515 * 359.65864 * 27 7 6 29 29 H 1.09007 * 109.46405 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47086 * 239.99660 * 1 2 3 31 31 H 1.08995 * 109.46960 * 119.99744 * 1 2 3 32 32 H 1.09005 * 109.47056 * 90.00222 * 3 2 1 33 33 H 1.09001 * 109.47279 * 210.00194 * 3 2 1 34 34 H 1.09006 * 109.47392 * 330.00249 * 3 2 1 35 35 H 1.07992 * 120.78653 * 359.97438 * 5 4 2 36 36 H 1.07998 * 120.41210 * 179.97438 * 6 5 4 37 37 H 0.97006 * 119.99882 * 354.89078 * 8 7 6 38 38 H 1.08999 * 109.47114 * 300.00118 * 11 9 8 39 39 H 1.08995 * 109.47266 * 59.99640 * 11 9 8 40 40 H 1.07997 * 119.96232 * 359.97157 * 13 12 11 41 41 H 1.07993 * 120.03734 * 180.27158 * 14 13 12 42 42 H 0.96996 * 119.99652 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.03483 * 179.97438 * 25 15 14 44 44 H 1.08004 * 119.96082 * 180.02562 * 26 25 15 45 45 H 1.08003 * 119.62536 * 180.30792 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1647 -1.2120 -0.0005 5 6 1.4765 -2.4242 -0.0016 6 6 2.2090 -3.5973 -0.0016 7 6 3.5975 -3.5293 0.0001 8 7 4.3461 -4.7080 0.0007 9 6 5.6889 -4.6537 -0.1017 10 8 6.2541 -3.5805 -0.1010 11 6 6.4880 -5.9261 -0.2172 12 6 7.9540 -5.5914 -0.3168 13 6 8.5339 -5.3935 -1.5568 14 6 9.8757 -5.0811 -1.6511 15 6 10.6456 -4.9773 -0.4999 16 8 11.9664 -4.6767 -0.5898 17 6 12.6796 -4.7042 0.5541 18 1 12.1818 -4.8770 1.4968 19 6 14.0522 -4.5109 0.5202 20 7 14.6585 -4.3000 -0.6282 21 14 15.0404 -4.5498 2.1048 22 1 14.8808 -5.8753 2.7552 23 1 16.4752 -4.3184 1.7993 24 1 14.5510 -3.4874 3.0196 25 6 10.0616 -5.1821 0.7434 26 6 8.7179 -5.4887 0.8314 27 7 4.2179 -2.3609 0.0021 28 6 3.5518 -1.2221 -0.0041 29 1 -0.3632 1.0278 0.0005 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3633 -0.5138 -0.8900 32 1 2.3793 1.5832 1.0277 33 1 3.1500 1.1383 -0.5139 34 1 1.6085 2.0284 -0.5138 35 1 0.3968 -2.4468 -0.0016 36 1 1.7086 -4.5544 -0.0020 37 1 3.8997 -5.5660 0.0748 38 1 6.3159 -6.5444 0.6638 39 1 6.1777 -6.4703 -1.1091 40 1 7.9357 -5.4795 -2.4518 41 1 10.3270 -4.9223 -2.6193 42 1 15.6187 -4.1644 -0.6519 43 1 10.6578 -5.1024 1.6404 44 1 8.2631 -5.6477 1.7980 45 1 4.0926 -0.2872 -0.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110313074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = 31.233162 kcal Electronic energy + Delta-G solvation = -27662.118604 eV Core-core repulsion = 23646.560631 eV Total energy + Delta-G solvation = -4015.557973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82860 -39.45995 -38.68029 -37.07726 -36.31698 -34.37372 -32.43146 -32.37710 -31.37344 -30.06403 -29.62972 -28.69327 -26.72802 -25.28102 -24.71844 -23.73146 -21.90506 -21.84418 -20.86745 -19.94150 -18.24020 -17.89323 -17.27190 -17.05443 -16.82366 -15.97623 -15.59645 -15.27587 -14.93122 -14.57840 -14.48670 -14.41691 -14.26047 -13.76440 -13.61601 -13.48762 -13.34471 -13.28303 -13.16602 -12.98345 -12.61459 -12.49804 -12.42670 -12.06219 -11.81547 -11.48163 -11.18753 -10.99747 -10.76746 -10.67987 -10.56878 -10.37217 -10.03751 -9.98360 -9.29746 -9.24700 -8.99373 -8.74034 -8.05542 -7.31415 -7.07755 -6.37442 -3.95837 1.05971 1.30754 2.32494 2.34879 2.73608 2.91202 3.06896 3.18331 3.20425 3.22012 3.88272 4.03410 4.35149 4.57075 4.58445 4.65964 4.71037 4.90874 4.92538 4.93574 5.08090 5.18605 5.20069 5.24300 5.32814 5.34540 5.37193 5.41021 5.47992 5.65712 5.73506 5.77539 5.82321 5.94053 6.05067 6.30618 6.50975 6.64510 6.79015 6.81991 6.99985 7.04300 7.13755 7.27820 7.33609 7.45975 7.53503 7.92856 8.08025 8.10413 8.49254 9.08198 9.79607 10.80723 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.001939 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.576054 B =14435.730092 C =15284.632380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.636 5.636 3 C 0.093 3.907 4 C 0.128 3.872 5 C -0.125 4.125 6 C -0.162 4.162 7 C 0.309 3.691 8 N -0.669 5.669 9 C 0.495 3.505 10 O -0.455 6.455 11 C -0.077 4.077 12 C -0.170 4.170 13 C -0.058 4.058 14 C -0.191 4.191 15 C 0.157 3.843 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.055 4.055 27 N -0.434 5.434 28 C 0.065 3.935 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.412 0.588 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.756 2.587 1.781 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.351 5.351 3 C -0.050 4.050 4 C 0.025 3.975 5 C -0.156 4.156 6 C -0.186 4.186 7 C 0.078 3.922 8 N -0.318 5.318 9 C 0.280 3.720 10 O -0.322 6.322 11 C -0.117 4.117 12 C -0.172 4.172 13 C -0.077 4.077 14 C -0.211 4.211 15 C 0.104 3.896 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.074 4.074 27 N -0.146 5.146 28 C -0.099 4.099 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.248 0.752 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.122 0.878 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -28.985 3.607 1.491 29.247 hybrid contribution -0.830 -0.395 0.912 1.295 sum -29.815 3.212 2.402 30.084 Atomic orbital electron populations 1.21573 0.79585 1.02435 1.00945 1.46185 1.04721 1.02779 1.81380 1.21687 0.97386 0.84637 1.01340 1.18831 0.92703 0.86511 0.99465 1.20795 0.99885 0.90263 1.04615 1.21241 0.92287 0.99258 1.05844 1.18343 0.87592 0.86724 0.99574 1.43760 1.07502 1.06743 1.73823 1.21293 0.81041 0.92712 0.76907 1.90844 1.68746 1.30392 1.42180 1.20410 0.93201 0.94273 1.03820 1.18606 0.92550 1.12234 0.93782 1.20397 0.93707 0.97610 0.95968 1.20145 0.93714 1.10417 0.96798 1.19388 0.85619 0.91487 0.93148 1.83977 1.14617 1.75008 1.34610 1.21278 0.89466 1.51115 0.84800 0.89153 1.25280 0.95808 0.96661 0.98832 1.70037 1.10342 1.44819 1.24730 0.85788 0.78476 0.79104 0.80090 1.19548 1.20329 1.19528 1.21098 0.95510 1.10655 0.97897 1.20505 0.93331 0.97060 0.96486 1.67580 1.38778 0.96572 1.11718 1.22321 0.88909 0.96339 1.02319 0.90858 0.92985 0.92985 0.93258 0.91128 0.91461 0.84904 0.84839 0.75246 0.88946 0.88848 0.87390 0.86572 0.92061 0.85615 0.87819 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 9.43 59.85 0.56 1.05 16 2 N -0.64 -4.93 3.42 -187.37 -0.64 -5.57 16 3 C 0.09 0.56 10.17 59.84 0.61 1.17 16 4 C 0.13 1.30 6.57 -83.55 -0.55 0.75 16 5 C -0.13 -1.10 9.41 -39.12 -0.37 -1.47 16 6 C -0.16 -1.49 9.93 -39.27 -0.39 -1.88 16 7 C 0.31 3.96 7.42 -154.54 -1.15 2.82 16 8 N -0.67 -7.59 5.40 -11.39 -0.06 -7.65 16 9 C 0.49 7.43 7.78 -10.99 -0.09 7.35 16 10 O -0.46 -9.29 14.30 5.55 0.08 -9.21 16 11 C -0.08 -0.99 5.83 -29.03 -0.17 -1.16 16 12 C -0.17 -3.08 4.38 -104.58 -0.46 -3.54 16 13 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 14 C -0.19 -4.33 9.99 -39.40 -0.39 -4.73 16 15 C 0.16 4.03 6.65 -39.11 -0.26 3.77 16 16 O -0.18 -5.32 9.76 0.02 0.00 -5.32 16 17 C -0.39 -11.31 9.49 30.89 0.29 -11.02 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -26.04 13.67 55.48 0.76 -25.28 16 21 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 C -0.23 -5.38 9.17 -39.39 -0.36 -5.74 16 26 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 27 N -0.43 -6.80 7.88 -12.17 -0.10 -6.89 16 28 C 0.06 0.82 10.38 -17.33 -0.18 0.64 16 29 H 0.07 0.24 7.79 -51.93 -0.40 -0.16 16 30 H 0.05 0.24 7.99 -51.93 -0.41 -0.18 16 31 H 0.05 0.23 7.99 -51.93 -0.41 -0.18 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.46 6.21 -51.93 -0.32 0.13 16 34 H 0.07 0.29 7.92 -51.93 -0.41 -0.13 16 35 H 0.13 0.82 6.88 -52.49 -0.36 0.46 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.41 2.76 8.70 -40.82 -0.36 2.41 16 38 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 44 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 45 H 0.15 1.75 6.14 -52.48 -0.32 1.43 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -38.37 382.11 -8.65 -47.02 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.66 Total: 5.01 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.76 Total: -14.00 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.04 Total: -45.38 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.53 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.37 -8.65 -47.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110313074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.250 kcal (2) G-P(sol) polarization free energy of solvation -38.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds