Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 120.00313 * 2 1 4 4 C 1.39943 * 119.99791 * 180.02562 * 2 1 3 5 5 C 1.39402 * 120.41540 * 0.02562 * 4 2 1 6 6 C 1.38304 * 118.43040 * 180.02562 * 5 4 2 7 7 C 1.39016 * 119.17887 * 0.02562 * 6 5 4 8 8 N 1.39630 * 119.61779 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00837 * 174.88814 * 8 7 6 10 10 O 1.21289 * 119.99112 * 5.11252 * 9 8 7 11 11 C 1.50695 * 120.00844 * 185.11464 * 9 8 7 12 12 C 1.50705 * 109.47441 * 180.02562 * 11 9 8 13 13 C 1.38303 * 119.92773 * 269.72792 * 12 11 9 14 14 C 1.38096 * 120.06773 * 179.72582 * 13 12 11 15 15 C 1.38878 * 119.92787 * 0.56573 * 14 13 12 16 16 O 1.35753 * 120.06776 * 179.68126 * 15 14 13 17 17 C 1.34835 * 116.99856 * 185.54525 * 16 15 14 18 18 H 1.07998 * 120.00059 * 354.95090 * 17 16 15 19 19 C 1.38654 * 120.00130 * 174.94489 * 17 16 15 20 20 N 1.31563 * 119.99718 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00344 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46927 * 60.00077 * 21 19 17 23 23 H 1.48504 * 109.47572 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47196 * 300.00331 * 21 19 17 25 25 C 1.38884 * 119.86535 * 359.70536 * 15 14 13 26 26 C 1.38101 * 119.92497 * 0.02562 * 25 15 14 27 27 N 1.32297 * 120.77185 * 0.02562 * 7 6 5 28 28 C 1.31931 * 121.70515 * 359.65864 * 27 7 6 29 29 H 1.09007 * 109.46405 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47086 * 239.99660 * 1 2 3 31 31 H 1.08995 * 109.46960 * 119.99744 * 1 2 3 32 32 H 1.09005 * 109.47056 * 90.00222 * 3 2 1 33 33 H 1.09001 * 109.47279 * 210.00194 * 3 2 1 34 34 H 1.09006 * 109.47392 * 330.00249 * 3 2 1 35 35 H 1.07992 * 120.78653 * 359.97438 * 5 4 2 36 36 H 1.07998 * 120.41210 * 179.97438 * 6 5 4 37 37 H 0.97006 * 119.99882 * 354.89078 * 8 7 6 38 38 H 1.08999 * 109.47114 * 300.00118 * 11 9 8 39 39 H 1.08995 * 109.47266 * 59.99640 * 11 9 8 40 40 H 1.07997 * 119.96232 * 359.97157 * 13 12 11 41 41 H 1.07993 * 120.03734 * 180.27158 * 14 13 12 42 42 H 0.96996 * 119.99652 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.03483 * 179.97438 * 25 15 14 44 44 H 1.08004 * 119.96082 * 180.02562 * 26 25 15 45 45 H 1.08003 * 119.62536 * 180.30792 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1647 -1.2120 -0.0005 5 6 1.4765 -2.4242 -0.0016 6 6 2.2090 -3.5973 -0.0016 7 6 3.5975 -3.5293 0.0001 8 7 4.3461 -4.7080 0.0007 9 6 5.6889 -4.6537 -0.1017 10 8 6.2541 -3.5805 -0.1010 11 6 6.4880 -5.9261 -0.2172 12 6 7.9540 -5.5914 -0.3168 13 6 8.5339 -5.3935 -1.5568 14 6 9.8757 -5.0811 -1.6511 15 6 10.6456 -4.9773 -0.4999 16 8 11.9664 -4.6767 -0.5898 17 6 12.6796 -4.7042 0.5541 18 1 12.1818 -4.8770 1.4968 19 6 14.0522 -4.5109 0.5202 20 7 14.6585 -4.3000 -0.6282 21 14 15.0404 -4.5498 2.1048 22 1 14.8808 -5.8753 2.7552 23 1 16.4752 -4.3184 1.7993 24 1 14.5510 -3.4874 3.0196 25 6 10.0616 -5.1821 0.7434 26 6 8.7179 -5.4887 0.8314 27 7 4.2179 -2.3609 0.0021 28 6 3.5518 -1.2221 -0.0041 29 1 -0.3632 1.0278 0.0005 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3633 -0.5138 -0.8900 32 1 2.3793 1.5832 1.0277 33 1 3.1500 1.1383 -0.5139 34 1 1.6085 2.0284 -0.5138 35 1 0.3968 -2.4468 -0.0016 36 1 1.7086 -4.5544 -0.0020 37 1 3.8997 -5.5660 0.0748 38 1 6.3159 -6.5444 0.6638 39 1 6.1777 -6.4703 -1.1091 40 1 7.9357 -5.4795 -2.4518 41 1 10.3270 -4.9223 -2.6193 42 1 15.6187 -4.1644 -0.6519 43 1 10.6578 -5.1024 1.6404 44 1 8.2631 -5.6477 1.7980 45 1 4.0926 -0.2872 -0.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110313074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 4.799849 kcal Electronic energy + Delta-G solvation = -27663.264839 eV Core-core repulsion = 23646.560631 eV Total energy + Delta-G solvation = -4016.704207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71192 -40.85476 -40.10970 -38.30385 -37.58810 -35.35635 -34.38767 -33.16588 -32.85641 -31.76941 -30.48782 -29.20880 -28.21298 -27.07086 -25.59761 -24.57192 -23.62848 -22.84749 -22.07744 -21.13151 -19.83815 -19.13714 -18.77039 -18.09466 -17.82464 -16.81087 -16.66882 -16.41808 -16.19941 -16.01669 -15.83635 -15.55498 -15.46941 -15.11021 -15.05760 -14.72107 -14.54489 -14.36968 -14.12543 -14.02754 -13.76097 -13.58639 -13.42097 -13.00086 -12.95201 -12.77982 -12.55801 -12.43692 -12.29306 -12.25797 -12.13068 -11.87777 -11.17606 -11.08221 -10.87708 -10.77382 -10.02274 -9.94809 -9.75220 -8.89124 -8.46747 -8.03439 -6.15088 0.27967 0.51995 0.62634 0.67882 1.33513 1.44914 1.50469 1.86605 2.05716 2.18218 2.28051 2.84615 3.05047 3.17604 3.52427 3.60351 3.87292 3.96047 4.00072 4.06892 4.07993 4.19756 4.24762 4.37792 4.47714 4.51637 4.53884 4.60985 4.73210 4.77668 4.80193 4.81681 4.89051 4.90129 4.95809 5.07778 5.10892 5.15210 5.31178 5.32193 5.57514 5.72330 5.79169 5.83185 6.03289 6.23057 6.26568 6.35251 6.50012 6.97356 7.19509 7.58824 7.78962 8.76543 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.001939 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.576054 B =14435.730092 C =15284.632380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.638 5.638 3 C 0.087 3.913 4 C 0.135 3.865 5 C -0.127 4.127 6 C -0.139 4.139 7 C 0.273 3.727 8 N -0.649 5.649 9 C 0.496 3.504 10 O -0.524 6.524 11 C -0.072 4.072 12 C -0.145 4.145 13 C -0.057 4.057 14 C -0.207 4.207 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.260 1.260 25 C -0.245 4.245 26 C -0.060 4.060 27 N -0.485 5.485 28 C 0.027 3.973 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.435 0.565 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.111 0.889 42 H 0.273 0.727 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.873 0.978 3.069 36.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.351 5.351 3 C -0.055 4.055 4 C 0.030 3.970 5 C -0.157 4.157 6 C -0.163 4.163 7 C 0.041 3.959 8 N -0.300 5.300 9 C 0.283 3.717 10 O -0.396 6.396 11 C -0.112 4.112 12 C -0.146 4.146 13 C -0.075 4.075 14 C -0.227 4.227 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.179 1.179 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.264 4.264 26 C -0.078 4.078 27 N -0.198 5.198 28 C -0.135 4.135 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.275 0.725 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -34.245 1.984 2.780 34.415 hybrid contribution 0.244 0.128 0.438 0.517 sum -34.001 2.112 3.218 34.219 Atomic orbital electron populations 1.21801 0.77559 1.04033 1.01691 1.46497 1.06049 1.02377 1.80192 1.21791 0.97398 0.84735 1.01626 1.18944 0.91986 0.88176 0.97883 1.21229 1.01450 0.89440 1.03587 1.21636 0.90709 1.01236 1.02675 1.18694 0.89105 0.86281 1.01840 1.43445 1.06353 1.07680 1.72540 1.21524 0.82180 0.92183 0.75781 1.90848 1.70270 1.32697 1.45760 1.20535 0.88686 0.94099 1.07848 1.19248 0.95502 1.07411 0.92462 1.20875 0.92360 0.95978 0.98310 1.20433 0.95327 1.10958 0.95943 1.19937 0.84922 0.93698 0.95241 1.83937 1.16653 1.78145 1.35364 1.21787 0.90327 1.51718 0.85286 0.88306 1.26635 0.96618 0.95854 1.03104 1.70190 1.10786 1.47381 1.27618 0.84632 0.76583 0.79908 0.74954 1.17906 1.19379 1.18433 1.21228 0.97270 1.11220 0.96680 1.20939 0.91917 0.95971 0.98938 1.67388 1.41129 0.98212 1.13081 1.22268 0.90351 0.95681 1.05194 0.89059 0.92160 0.92098 0.93119 0.92278 0.89183 0.81602 0.80677 0.72464 0.84878 0.84719 0.83656 0.87071 0.91834 0.86505 0.84399 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 9.43 127.77 1.21 1.80 16 2 N -0.64 -8.66 3.42 -746.70 -2.55 -11.21 16 3 C 0.09 0.99 10.17 127.77 1.30 2.29 16 4 C 0.14 2.55 6.57 38.24 0.25 2.80 16 5 C -0.13 -1.79 9.41 22.57 0.21 -1.58 16 6 C -0.14 -2.03 9.93 22.47 0.22 -1.81 16 7 C 0.27 6.44 7.42 132.85 0.99 7.43 16 8 N -0.65 -12.53 5.40 -308.32 -1.66 -14.20 16 9 C 0.50 13.55 7.78 87.66 0.68 14.23 16 10 O -0.52 -21.25 14.30 -3.06 -0.04 -21.29 16 11 C -0.07 -1.51 5.83 29.10 0.17 -1.34 16 12 C -0.15 -4.87 4.38 -19.83 -0.09 -4.96 16 13 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 14 C -0.21 -9.76 9.99 22.39 0.22 -9.54 16 15 C 0.11 6.10 6.65 22.58 0.15 6.25 16 16 O -0.23 -15.08 9.76 -22.83 -0.22 -15.30 16 17 C -0.42 -25.63 9.49 67.92 0.64 -24.99 16 18 H 0.10 5.63 5.20 -2.91 -0.02 5.62 16 19 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 20 N -0.92 -58.93 13.67 21.61 0.30 -58.63 16 21 Si 1.02 44.91 29.55 68.60 2.03 46.94 16 22 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 C -0.24 -11.73 9.17 22.39 0.21 -11.53 16 26 C -0.06 -2.27 9.69 22.25 0.22 -2.06 16 27 N -0.48 -15.34 7.88 -192.41 -1.52 -16.86 16 28 C 0.03 0.71 10.38 84.79 0.88 1.59 16 29 H 0.09 0.28 7.79 -2.38 -0.02 0.26 16 30 H 0.06 0.32 7.99 -2.39 -0.02 0.30 16 31 H 0.06 0.32 7.99 -2.39 -0.02 0.30 16 32 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.81 6.21 -2.39 -0.01 0.80 16 34 H 0.09 0.60 7.92 -2.38 -0.02 0.58 16 35 H 0.17 1.20 6.88 -2.91 -0.02 1.18 16 36 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.43 3.65 8.70 -92.70 -0.81 2.84 16 38 H 0.13 1.84 8.08 -2.39 -0.02 1.82 16 39 H 0.13 1.84 8.08 -2.39 -0.02 1.82 16 40 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 42 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 43 H 0.12 5.66 5.64 -2.91 -0.02 5.65 16 44 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.15 3.67 6.14 -2.91 -0.02 3.66 16 Total: -1.00 -94.74 382.11 4.50 -90.24 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.23 Total: 24.65 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 7.94 Total: -24.34 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -5.44 Total: -100.90 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.27 Total: -36.60 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -94.74 4.50 -90.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110313074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.041 kcal (2) G-P(sol) polarization free energy of solvation -94.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds