Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 110.38983 * 2 1 4 4 C 1.53979 * 110.44042 * 122.54281 * 2 1 3 5 5 C 1.51196 * 104.31031 * 118.74426 * 4 2 1 6 6 O 1.21285 * 125.58409 * 180.02562 * 5 4 2 7 7 N 1.34047 * 108.82263 * 359.73372 * 5 4 2 8 8 N 1.39340 * 113.07495 * 0.46469 * 7 5 4 9 9 C 1.34772 * 125.33576 * 179.79480 * 8 7 5 10 10 O 1.21669 * 120.00331 * 4.72634 * 9 8 7 11 11 C 1.46916 * 120.00025 * 184.73369 * 9 8 7 12 12 C 1.36369 * 126.76654 * 6.36328 * 11 9 8 13 13 N 1.35468 * 109.76934 * 180.02562 * 12 11 9 14 14 C 1.46501 * 124.78756 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.46952 * 265.02099 * 14 13 12 16 16 C 1.50703 * 109.47086 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00269 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99513 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99392 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00364 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47022 * 89.99842 * 20 18 16 22 22 H 1.48502 * 109.46996 * 209.99705 * 20 18 16 23 23 H 1.48498 * 109.46933 * 329.99997 * 20 18 16 24 24 C 1.37959 * 110.42980 * 0.22981 * 13 12 11 25 25 C 1.39122 * 133.19236 * 179.75281 * 24 13 12 26 26 C 1.37760 * 119.92764 * 180.02562 * 25 24 13 27 27 C 1.38750 * 120.63726 * 0.02562 * 26 25 24 28 28 C 1.37757 * 120.30427 * 359.61771 * 27 26 25 29 29 C 1.39276 * 119.66390 * 0.60151 * 28 27 26 30 30 H 1.09004 * 109.47034 * 189.70058 * 1 2 3 31 31 H 1.08996 * 109.46965 * 309.70129 * 1 2 3 32 32 H 1.09000 * 109.46909 * 69.70453 * 1 2 3 33 33 H 1.08998 * 110.47166 * 237.45754 * 4 2 1 34 34 H 1.09007 * 110.46458 * 0.04103 * 4 2 1 35 35 H 0.97003 * 123.46555 * 180.26490 * 7 5 4 36 36 H 1.08003 * 125.11916 * 0.04510 * 12 11 9 37 37 H 1.08999 * 109.47384 * 145.02382 * 14 13 12 38 38 H 1.09000 * 109.47232 * 25.01923 * 14 13 12 39 39 H 1.09000 * 109.47009 * 299.99961 * 15 14 13 40 40 H 1.08999 * 109.46845 * 59.99953 * 15 14 13 41 41 H 0.97001 * 119.99345 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.03213 * 359.97438 * 25 24 13 43 43 H 1.08009 * 119.67948 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.85107 * 180.02562 * 27 26 25 45 45 H 1.07993 * 120.16657 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0677 -0.7761 1.2163 5 6 2.8584 -1.9150 0.6131 6 8 3.4511 -2.7704 1.2360 7 7 2.7917 -1.8279 -0.7229 8 7 2.0431 -0.7380 -1.1624 9 6 1.8197 -0.4147 -2.4516 10 8 2.2155 -1.1463 -3.3396 11 6 1.0985 0.8211 -2.7847 12 6 0.7026 1.7947 -1.9157 13 7 0.0643 2.7801 -2.5915 14 6 -0.4973 3.9861 -1.9780 15 6 -1.9830 3.7652 -1.6861 16 6 -2.5606 5.0056 -1.0544 17 1 -1.9312 5.8655 -0.8791 18 6 -3.8929 5.0428 -0.7014 19 7 -4.3969 6.1251 -0.1496 20 14 -4.9817 3.5557 -1.0054 21 1 -4.9477 2.6660 0.1832 22 1 -6.3763 4.0046 -1.2479 23 1 -4.4866 2.8142 -2.1929 24 6 0.0127 2.4851 -3.9382 25 6 -0.5226 3.1476 -5.0383 26 6 -0.4175 2.5908 -6.2939 27 6 0.2184 1.3710 -6.4756 28 6 0.7613 0.7032 -5.3999 29 6 0.6582 1.2523 -4.1242 30 1 -0.3633 -1.0130 0.1732 31 1 -0.3633 0.6564 0.7906 32 1 -0.3633 0.3565 -0.9639 33 1 2.7156 -0.1394 1.8188 34 1 1.2439 -1.1607 1.8176 35 1 3.2229 -2.4571 -1.3221 36 1 0.8727 1.7822 -0.8493 37 1 -0.3824 4.8282 -2.6604 38 1 0.0282 4.1985 -1.0469 39 1 -2.5084 3.5528 -2.6172 40 1 -2.0979 2.9231 -1.0037 41 1 -5.3343 6.1514 0.0984 42 1 -1.0207 4.0969 -4.9078 43 1 -0.8349 3.1083 -7.1451 44 1 0.2939 0.9463 -7.4657 45 1 1.2554 -0.2463 -5.5438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588104085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 44.941044 kcal Electronic energy + Delta-G solvation = -29803.827173 eV Core-core repulsion = 25788.863619 eV Total energy + Delta-G solvation = -4014.963555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89111 -40.99710 -38.78902 -37.33797 -36.93322 -34.51714 -33.61404 -32.47930 -31.44686 -30.73609 -29.28912 -28.65821 -27.94115 -25.53783 -23.61683 -22.70146 -22.33170 -21.72600 -21.31443 -20.37235 -20.11068 -17.95817 -17.38358 -17.07534 -16.52711 -16.44348 -16.17433 -15.52401 -15.29847 -15.15878 -14.63156 -14.57204 -14.35317 -14.12255 -14.04085 -13.77873 -13.51871 -13.26292 -13.16559 -12.87170 -12.65194 -12.36634 -12.13004 -12.10481 -11.98742 -11.63941 -11.40297 -11.28121 -11.07805 -10.89319 -10.52814 -10.45526 -10.35329 -10.12201 -10.08374 -9.58225 -9.49222 -8.80582 -8.45323 -8.16468 -7.58268 -6.31026 -4.33804 1.00106 1.51392 1.61981 1.95685 2.20814 2.87131 3.12270 3.22560 3.25195 3.25252 3.60862 3.85025 4.00390 4.03705 4.21716 4.34630 4.42304 4.63360 4.74836 4.77110 5.00433 5.06035 5.14243 5.19677 5.22108 5.30465 5.43873 5.46820 5.54069 5.64276 5.71204 5.72905 5.78681 5.91994 6.03269 6.07334 6.20281 6.50309 6.64670 6.67870 6.72567 6.76803 6.78259 6.94718 7.05139 7.21640 7.27552 7.46772 7.70307 8.14053 8.18248 8.69230 9.29028 10.81195 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.004104 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.505611 B = 6821.459418 C = 9151.274948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.127 3.873 3 H 0.106 0.894 4 C -0.162 4.162 5 C 0.528 3.472 6 O -0.521 6.521 7 N -0.516 5.516 8 N -0.425 5.425 9 C 0.617 3.383 10 O -0.538 6.538 11 C -0.251 4.251 12 C 0.116 3.884 13 N -0.450 5.450 14 C 0.108 3.892 15 C -0.023 4.023 16 C -0.532 4.532 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.265 1.265 24 C 0.090 3.910 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.140 4.140 28 C -0.075 4.075 29 C -0.056 4.056 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.431 0.569 36 H 0.187 0.813 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.025 0.975 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.648 -9.177 -3.084 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.024 3.976 3 H 0.124 0.876 4 C -0.202 4.202 5 C 0.313 3.687 6 O -0.396 6.396 7 N -0.263 5.263 8 N -0.254 5.254 9 C 0.411 3.589 10 O -0.414 6.414 11 C -0.263 4.263 12 C -0.020 4.020 13 N -0.127 5.127 14 C -0.011 4.011 15 C -0.061 4.061 16 C -0.570 4.570 17 H 0.094 0.906 18 C -0.127 4.127 19 N -0.530 5.530 20 Si 0.702 3.298 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.015 4.015 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.159 4.159 28 C -0.093 4.093 29 C -0.060 4.060 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.276 0.724 36 H 0.203 0.797 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.814 -9.545 -3.019 14.736 hybrid contribution -0.652 -0.873 -0.233 1.114 sum 10.163 -10.418 -3.251 14.912 Atomic orbital electron populations 1.22749 0.92417 1.04390 1.05368 1.22158 0.96048 0.96218 0.83137 0.87622 1.22674 1.02335 0.97053 0.98188 1.20185 0.80897 0.86533 0.81072 1.90846 1.45733 1.39354 1.63631 1.45072 1.50274 1.23586 1.07391 1.47662 1.50515 1.21119 1.06103 1.17035 0.78626 0.84899 0.78377 1.90789 1.52913 1.52186 1.45507 1.19192 1.16249 0.97495 0.93389 1.22969 0.93308 0.87440 0.98298 1.44496 1.44228 1.18770 1.05228 1.22313 0.97388 0.83049 0.98352 1.19936 0.89936 0.98636 0.97624 1.20816 0.95654 0.99211 1.41324 0.90551 1.24934 0.97845 0.95844 0.94055 1.69885 1.14398 1.27668 1.41059 0.86843 0.80214 0.83295 0.79413 1.20030 1.21022 1.18947 1.18287 1.02588 0.96144 0.84432 1.20188 1.01881 1.00756 0.90353 1.20804 0.99880 0.95965 0.96047 1.20923 1.00589 0.95942 0.98462 1.20561 0.98767 0.99767 0.90249 1.18577 1.01087 0.94246 0.92130 0.91097 0.89186 0.89559 0.86108 0.85961 0.72417 0.79676 0.89310 0.89093 0.95653 0.96264 0.92297 0.85519 0.85740 0.86087 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 7.97 37.16 0.30 -1.32 16 2 C 0.13 1.02 2.97 -67.18 -0.20 0.82 16 3 H 0.11 0.65 6.17 -51.92 -0.32 0.33 16 4 C -0.16 -1.15 6.59 -27.13 -0.18 -1.33 16 5 C 0.53 5.73 8.63 -11.07 -0.10 5.64 16 6 O -0.52 -7.44 18.03 5.55 0.10 -7.34 16 7 N -0.52 -5.70 6.62 31.22 0.21 -5.49 16 8 N -0.43 -4.78 3.67 -54.26 -0.20 -4.98 16 9 C 0.62 8.72 7.71 -12.75 -0.10 8.62 16 10 O -0.54 -9.06 16.63 5.22 0.09 -8.97 16 11 C -0.25 -3.54 5.59 -103.31 -0.58 -4.12 16 12 C 0.12 1.44 7.86 -16.62 -0.13 1.31 16 13 N -0.45 -6.54 2.74 -114.22 -0.31 -6.86 16 14 C 0.11 1.68 5.89 -4.04 -0.02 1.66 16 15 C -0.02 -0.47 4.37 -27.88 -0.12 -0.59 16 16 C -0.53 -13.08 9.66 -34.44 -0.33 -13.42 16 17 H 0.08 2.00 7.99 -52.49 -0.42 1.58 16 18 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -25.14 13.96 55.43 0.77 -24.37 16 20 Si 0.88 19.83 27.47 -169.99 -4.67 15.16 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 24 C 0.09 1.39 6.79 -83.97 -0.57 0.82 16 25 C -0.11 -1.61 9.97 -39.43 -0.39 -2.00 16 26 C -0.11 -1.36 10.01 -39.57 -0.40 -1.75 16 27 C -0.14 -1.76 10.03 -39.57 -0.40 -2.16 16 28 C -0.07 -1.08 9.86 -39.37 -0.39 -1.47 16 29 C -0.06 -0.87 6.27 -104.95 -0.66 -1.53 16 30 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.93 4.71 -51.93 -0.24 0.69 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 0.71 7.68 -51.93 -0.40 0.31 16 35 H 0.43 4.69 8.75 -183.17 -1.60 3.09 16 36 H 0.19 1.68 3.73 -52.48 -0.20 1.48 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 39 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 40 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.13 1.83 7.47 -52.49 -0.39 1.44 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -32.72 369.86 -9.69 -42.41 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.88 Total: 3.78 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -4.36 Total: -8.91 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.47 Total: -41.70 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.19 Total: -16.31 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.67 Total: 15.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.72 -9.69 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588104085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.349 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds