Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47322 * 2 1 4 4 N 1.46502 * 109.47073 * 119.99905 * 2 1 3 5 5 C 1.36934 * 120.00331 * 275.00231 * 4 2 1 6 6 H 1.08000 * 119.99790 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99864 * 180.02562 * 5 4 2 8 8 N 1.31614 * 120.00427 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47194 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47292 * 119.99973 * 9 7 5 12 12 H 1.48499 * 109.47130 * 239.99778 * 9 7 5 13 13 C 1.50699 * 109.47478 * 240.00273 * 2 1 3 14 14 C 1.38231 * 120.00082 * 99.99608 * 13 2 1 15 15 C 1.38233 * 120.00396 * 180.02562 * 14 13 2 16 16 C 1.38244 * 119.99671 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99989 * 179.97438 * 16 15 14 18 18 N 1.46495 * 109.47456 * 89.99474 * 17 16 15 19 19 C 1.34777 * 119.99950 * 180.02562 * 18 17 16 20 20 O 1.21530 * 120.00224 * 359.97438 * 19 18 17 21 21 C 1.47985 * 119.99554 * 180.02562 * 19 18 17 22 22 C 1.39917 * 120.91029 * 179.97438 * 21 19 18 23 23 C 1.38008 * 119.01082 * 180.02562 * 22 21 19 24 24 N 1.31989 * 120.89064 * 0.02662 * 23 22 21 25 25 O 1.41605 * 118.98813 * 179.97438 * 24 23 22 26 26 C 1.31990 * 122.02354 * 0.23225 * 24 23 22 27 27 C 1.38007 * 120.89046 * 359.48960 * 26 24 23 28 28 C 1.38232 * 119.99946 * 0.24670 * 16 15 14 29 29 C 1.38231 * 119.99846 * 280.02429 * 13 2 1 30 30 H 1.08998 * 109.47173 * 59.99580 * 1 2 3 31 31 H 1.08995 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46974 * 299.99790 * 1 2 3 33 33 H 0.96998 * 119.99679 * 95.00597 * 4 2 1 34 34 H 0.97000 * 120.00097 * 180.02562 * 8 7 5 35 35 H 1.08002 * 119.99840 * 0.02562 * 14 13 2 36 36 H 1.07998 * 120.00367 * 179.97438 * 15 14 13 37 37 H 1.09001 * 109.47048 * 329.99373 * 17 16 15 38 38 H 1.09005 * 109.47029 * 209.99568 * 17 16 15 39 39 H 0.97005 * 119.99829 * 0.02562 * 18 17 16 40 40 H 1.08004 * 120.49642 * 0.02562 * 22 21 19 41 41 H 1.08005 * 119.55842 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.55534 * 179.72320 * 26 24 23 43 43 H 1.08002 * 120.49519 * 180.25149 * 27 26 24 44 44 H 1.08001 * 120.00197 * 179.72887 * 28 16 15 45 45 H 1.07995 * 120.00375 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.9263 -1.9386 3.4496 9 14 2.7913 0.2702 5.1180 10 1 2.3774 1.6826 4.9206 11 1 1.9311 -0.3583 6.1525 12 1 4.2084 0.2273 5.5598 13 6 2.0324 -0.7103 -1.2305 14 6 2.4588 0.0195 -2.3242 15 6 2.9191 -0.6320 -3.4531 16 6 2.9527 -2.0136 -3.4884 17 6 3.4540 -2.7239 -4.7193 18 7 4.8991 -2.9360 -4.6063 19 6 5.5686 -3.5569 -5.5976 20 8 4.9735 -3.9413 -6.5850 21 6 7.0283 -3.7715 -5.4831 22 6 7.7423 -4.4143 -6.5004 23 6 9.1026 -4.5944 -6.3525 24 7 9.7286 -4.1702 -5.2707 25 8 11.1252 -4.3766 -5.1608 26 6 9.0921 -3.5640 -4.2861 27 6 7.7324 -3.3380 -4.3545 28 6 2.5210 -2.7435 -2.3968 29 6 2.0664 -2.0918 -1.2656 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2496 -2.3959 4.2416 35 1 2.4322 1.0989 -2.2968 36 1 3.2518 -0.0617 -4.3078 37 1 3.2436 -2.1171 -5.6000 38 1 2.9517 -3.6868 -4.8131 39 1 5.3741 -2.6295 -3.8180 40 1 7.2364 -4.7644 -7.3881 41 1 9.6623 -5.0898 -7.1321 42 1 9.6435 -3.2370 -3.4168 43 1 7.2187 -2.8377 -3.5468 44 1 2.5431 -3.8229 -2.4260 45 1 1.7333 -2.6620 -0.4111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700096250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = 38.202722 kcal Electronic energy + Delta-G solvation = -27554.465007 eV Core-core repulsion = 23539.209257 eV Total energy + Delta-G solvation = -4015.255750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.51558 -40.92205 -40.22592 -37.45107 -35.95360 -35.64684 -34.13028 -33.01205 -32.01202 -31.75393 -31.15114 -29.99774 -27.54013 -26.05372 -25.60415 -25.20823 -23.76178 -22.95468 -22.00264 -21.09361 -19.80329 -19.36891 -18.53649 -18.18043 -17.25728 -16.91143 -16.84233 -16.75377 -16.55042 -16.27330 -15.91012 -15.76386 -15.34591 -15.13177 -15.00087 -14.83457 -14.44253 -14.22636 -13.76920 -13.70334 -13.58715 -13.40028 -13.19867 -13.01889 -12.86268 -12.69268 -12.41692 -12.24506 -12.08252 -11.98233 -11.58602 -11.54227 -11.37584 -11.00520 -10.81925 -10.81127 -10.28728 -10.03669 -9.74870 -9.52692 -9.00821 -7.93627 -5.21217 -0.96362 -0.45630 0.32704 0.57615 1.41374 1.42564 1.48164 1.48972 1.58172 1.92840 2.28430 2.56600 2.91249 3.19198 3.40423 3.41142 3.42649 3.48505 3.69265 3.79722 3.90758 4.02709 4.07058 4.19818 4.25690 4.39607 4.40931 4.57037 4.61423 4.63452 4.67454 4.75419 4.79115 4.84065 5.02666 5.10129 5.15335 5.20780 5.25777 5.44225 5.52484 5.59123 5.66292 5.68304 5.72875 5.88478 6.13836 6.29285 6.32333 6.94934 7.35884 8.10730 8.34528 9.29907 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.002216 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.050588 B =12630.666590 C =14599.273970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 H 0.054 0.946 4 N -0.734 5.734 5 C -0.235 4.235 6 H 0.076 0.924 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.073 4.073 14 C -0.123 4.123 15 C -0.090 4.090 16 C -0.117 4.117 17 C 0.171 3.829 18 N -0.703 5.703 19 C 0.565 3.435 20 O -0.554 6.554 21 C -0.086 4.086 22 C -0.052 4.052 23 C 0.074 3.926 24 N -0.133 5.133 25 O -0.617 6.617 26 C 0.072 3.928 27 C -0.069 4.069 28 C -0.096 4.096 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.415 0.585 40 H 0.197 0.803 41 H 0.203 0.797 42 H 0.200 0.800 43 H 0.201 0.799 44 H 0.134 0.866 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -0.866 -22.565 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.090 3.910 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.367 4.367 6 H 0.094 0.906 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.797 3.203 10 H -0.191 1.191 11 H -0.224 1.224 12 H -0.222 1.222 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.108 4.108 16 C -0.117 4.117 17 C 0.049 3.951 18 N -0.355 5.355 19 C 0.351 3.649 20 O -0.433 6.433 21 C -0.097 4.097 22 C -0.071 4.071 23 C -0.071 4.071 24 N 0.186 4.814 25 O -0.670 6.670 26 C -0.073 4.073 27 C -0.088 4.088 28 C -0.114 4.114 29 C -0.144 4.144 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.253 0.747 40 H 0.214 0.786 41 H 0.220 0.780 42 H 0.217 0.783 43 H 0.218 0.782 44 H 0.152 0.848 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.657 -1.026 -23.102 23.184 hybrid contribution 0.616 -0.051 1.980 2.074 sum 2.273 -1.077 -21.122 21.271 Atomic orbital electron populations 1.22270 0.97048 1.00846 1.00839 1.19428 0.92872 0.94767 0.83963 0.92796 1.42714 1.78427 1.10471 1.05883 1.19643 1.34618 0.94246 0.88219 0.90603 1.25471 1.03099 0.96870 1.01207 1.69801 1.52720 1.10125 1.29252 0.85157 0.76700 0.78282 0.80138 1.19058 1.22390 1.22230 1.20308 0.97326 0.94290 0.95490 1.21194 0.99490 1.00609 0.92856 1.21246 0.97880 0.93656 0.98009 1.19725 1.02871 0.93841 0.95304 1.20187 0.79133 1.00578 0.95194 1.45975 1.09429 1.58405 1.21660 1.17938 0.85982 0.78067 0.82943 1.90834 1.69538 1.51344 1.31597 1.20645 0.94202 0.99125 0.95737 1.22152 0.90776 0.93847 1.00332 1.23063 0.93787 0.98369 0.91877 1.43449 1.11170 1.18545 1.08190 1.97655 0.82304 1.90768 1.96314 1.23038 0.93944 0.95423 0.94901 1.22317 0.91477 0.96418 0.98590 1.21153 0.97663 1.00397 0.92199 1.20974 1.00852 0.94363 0.98242 0.91216 0.94119 0.94043 0.79145 0.94133 0.84698 0.83179 0.89239 0.90126 0.74743 0.78638 0.77983 0.78335 0.78220 0.84781 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.47 71.98 0.68 -4.31 16 2 C 0.20 7.21 3.09 44.24 0.14 7.34 16 3 H 0.05 1.96 7.94 -2.38 -0.02 1.95 16 4 N -0.73 -34.81 5.07 -326.50 -1.66 -36.46 16 5 C -0.24 -12.47 9.93 84.03 0.83 -11.63 16 6 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 7 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 8 N -0.97 -57.17 13.06 21.65 0.28 -56.89 16 9 Si 0.97 44.75 29.55 68.60 2.03 46.77 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 13 C -0.07 -2.17 4.95 -19.87 -0.10 -2.27 16 14 C -0.12 -2.76 9.67 22.27 0.22 -2.55 16 15 C -0.09 -1.48 9.70 22.27 0.22 -1.27 16 16 C -0.12 -1.89 5.25 -19.86 -0.10 -2.00 16 17 C 0.17 2.10 5.80 85.63 0.50 2.59 16 18 N -0.70 -6.94 5.51 -469.58 -2.59 -9.53 16 19 C 0.56 6.90 7.79 86.83 0.68 7.58 16 20 O -0.55 -10.49 16.44 -3.81 -0.06 -10.55 16 21 C -0.09 -0.76 5.91 -19.88 -0.12 -0.88 16 22 C -0.05 -0.42 9.68 22.62 0.22 -0.21 16 23 C 0.07 0.94 10.67 84.61 0.90 1.84 16 24 N -0.13 -2.75 3.58 -195.98 -0.70 -3.45 16 25 O -0.62 -22.34 20.04 -38.80 -0.78 -23.11 16 26 C 0.07 0.93 10.67 84.61 0.90 1.83 16 27 C -0.07 -0.45 9.61 22.62 0.22 -0.23 16 28 C -0.10 -2.03 9.70 22.27 0.22 -1.82 16 29 C -0.13 -3.67 9.06 22.27 0.20 -3.47 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.38 19.04 6.07 -92.71 -0.56 18.48 16 34 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.14 2.62 8.04 -2.91 -0.02 2.60 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 38 H 0.08 1.05 8.08 -2.38 -0.02 1.04 16 39 H 0.41 2.62 6.60 -92.70 -0.61 2.01 16 40 H 0.20 0.87 7.74 -2.91 -0.02 0.85 16 41 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.20 0.00 6.53 -2.91 -0.02 -0.02 16 44 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.10 3.46 6.92 -2.91 -0.02 3.44 16 Total: -1.00 -84.52 389.83 2.45 -82.07 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.14 Total: 24.23 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 6.06 Total: -13.08 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.66 Total: -106.33 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.84 Total: -33.66 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -84.52 2.45 -82.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700096250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.273 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds