Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47022 * 2 1 4 4 N 1.46496 * 109.47135 * 120.00332 * 2 1 3 5 5 C 1.36944 * 119.99765 * 275.00067 * 4 2 1 6 6 H 1.07994 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99927 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00316 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00164 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47178 * 90.00102 * 9 7 5 11 11 H 1.48496 * 109.47361 * 210.00552 * 9 7 5 12 12 H 1.48510 * 109.46863 * 330.00310 * 9 7 5 13 13 C 1.50698 * 109.47156 * 240.00419 * 2 1 3 14 14 C 1.38227 * 120.00136 * 100.00031 * 13 2 1 15 15 C 1.38244 * 120.00133 * 180.02562 * 14 13 2 16 16 C 1.38232 * 119.99611 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99860 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.47064 * 89.99969 * 17 16 15 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 16 20 20 O 1.21511 * 120.00421 * 0.02562 * 19 18 17 21 21 C 1.48168 * 119.99811 * 180.02562 * 19 18 17 22 22 C 1.39974 * 120.88769 * 359.72505 * 21 19 18 23 23 C 1.37978 * 119.13054 * 179.75110 * 22 21 19 24 24 N 1.31913 * 120.97668 * 0.53277 * 23 22 21 25 25 C 1.32170 * 121.97061 * 359.71558 * 24 23 22 26 26 O 1.35689 * 119.62435 * 179.97438 * 25 24 23 27 27 C 1.38898 * 120.75475 * 0.02792 * 25 24 23 28 28 C 1.38234 * 120.00312 * 0.25696 * 16 15 14 29 29 C 1.38239 * 119.99901 * 359.49432 * 28 16 15 30 30 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47306 * 299.99739 * 1 2 3 32 32 H 1.09000 * 109.47042 * 60.00116 * 1 2 3 33 33 H 0.96999 * 120.00479 * 94.99975 * 4 2 1 34 34 H 0.96998 * 120.00393 * 179.97438 * 8 7 5 35 35 H 1.07996 * 120.00251 * 359.97438 * 14 13 2 36 36 H 1.07998 * 119.99981 * 179.97438 * 15 14 13 37 37 H 1.09002 * 109.47152 * 330.00052 * 17 16 15 38 38 H 1.09001 * 109.46980 * 210.00152 * 17 16 15 39 39 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 40 40 H 1.07998 * 120.43554 * 359.97438 * 22 21 19 41 41 H 1.07996 * 119.51119 * 180.27492 * 23 22 21 42 42 H 0.96702 * 113.99858 * 270.03059 * 26 25 24 43 43 H 1.08003 * 120.52555 * 179.97438 * 27 25 24 44 44 H 1.07998 * 120.00015 * 179.72855 * 28 16 15 45 45 H 1.08001 * 119.99843 * 180.23314 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.7375 -0.0054 4.6429 9 14 3.0566 -2.4743 3.4251 10 1 4.4892 -2.6164 3.0607 11 1 2.8176 -3.1043 4.7483 12 1 2.2162 -3.1429 2.3994 13 6 2.0324 -0.7103 -1.2305 14 6 2.4587 0.0195 -2.3242 15 6 2.9191 -0.6321 -3.4532 16 6 2.9534 -2.0135 -3.4881 17 6 3.4547 -2.7239 -4.7190 18 7 4.9000 -2.9351 -4.6064 19 6 5.5694 -3.5568 -5.5973 20 8 4.9742 -3.9417 -6.5843 21 6 7.0310 -3.7709 -5.4832 22 6 7.7361 -3.3301 -4.3573 23 6 9.0959 -3.5532 -4.2865 24 7 9.7357 -4.1634 -5.2654 25 6 9.1119 -4.5919 -6.3490 26 8 9.8173 -5.2134 -7.3274 27 6 7.7426 -4.4124 -6.4981 28 6 2.5225 -2.7435 -2.3961 29 6 2.0671 -2.0918 -1.2653 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 3.0609 -0.4627 5.4349 35 1 2.4315 1.0988 -2.2971 36 1 3.2518 -0.0618 -4.3079 37 1 3.2436 -2.1175 -5.5998 38 1 2.9529 -3.6871 -4.8123 39 1 5.3750 -2.6282 -3.8184 40 1 7.2220 -2.8252 -3.5529 41 1 9.6452 -3.2196 -3.4185 42 1 10.1661 -4.6145 -8.0018 43 1 7.2367 -4.7637 -7.3853 44 1 2.5453 -3.8228 -2.4251 45 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724740857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = 3.181657 kcal Electronic energy + Delta-G solvation = -27667.596589 eV Core-core repulsion = 23650.822212 eV Total energy + Delta-G solvation = -4016.774377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.22789 -39.98712 -39.29021 -37.48380 -36.27482 -34.86010 -33.28264 -32.37292 -31.03191 -30.88526 -30.45762 -28.93508 -26.67217 -24.74747 -23.92737 -23.65922 -22.82727 -21.71046 -21.28478 -19.93939 -19.43404 -18.07609 -17.91583 -17.38440 -16.36078 -16.14805 -16.07312 -15.93435 -15.48846 -15.19990 -14.93369 -14.62574 -14.38142 -14.17331 -13.89875 -13.62073 -13.42633 -13.28844 -12.92588 -12.72099 -12.60692 -12.42889 -12.33461 -12.25090 -11.86926 -11.47690 -11.16723 -10.97495 -10.75638 -10.75102 -10.46596 -10.42678 -10.13939 -9.97778 -9.66196 -9.52910 -9.50428 -9.07559 -8.87826 -8.56173 -7.37673 -5.84649 -3.20850 0.14264 0.44417 1.21770 1.45014 2.37005 2.68104 3.04700 3.29509 3.31607 3.32205 3.38977 3.81490 4.06725 4.17754 4.35401 4.45670 4.48316 4.51196 4.76365 4.77001 4.99068 5.05370 5.13553 5.15837 5.21067 5.34403 5.38558 5.44931 5.47925 5.53867 5.71392 5.83141 5.84334 5.94372 6.02946 6.10855 6.14345 6.27462 6.42922 6.50615 6.53906 6.79231 6.93584 6.93842 7.00863 7.05250 7.33512 7.67814 7.90413 8.33884 9.11298 9.83598 10.02671 11.33414 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002298 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.738654 B =12182.328342 C =13721.530339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.209 3.791 3 H 0.066 0.934 4 N -0.745 5.745 5 C -0.245 4.245 6 H 0.092 0.908 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.053 4.053 14 C -0.118 4.118 15 C -0.098 4.098 16 C -0.133 4.133 17 C 0.167 3.833 18 N -0.714 5.714 19 C 0.557 3.443 20 O -0.529 6.529 21 C -0.071 4.071 22 C -0.152 4.152 23 C 0.125 3.875 24 N -0.488 5.488 25 C 0.309 3.691 26 O -0.479 6.479 27 C -0.129 4.129 28 C -0.098 4.098 29 C -0.114 4.114 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.405 0.595 40 H 0.146 0.854 41 H 0.171 0.829 42 H 0.403 0.597 43 H 0.154 0.846 44 H 0.120 0.880 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -5.220 -23.667 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 H 0.084 0.916 4 N -0.389 5.389 5 C -0.374 4.374 6 H 0.110 0.890 7 C -0.190 4.190 8 N -0.579 5.579 9 Si 0.712 3.288 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.204 1.204 13 C -0.054 4.054 14 C -0.136 4.136 15 C -0.117 4.117 16 C -0.133 4.133 17 C 0.044 3.956 18 N -0.366 5.366 19 C 0.343 3.657 20 O -0.406 6.406 21 C -0.082 4.082 22 C -0.172 4.172 23 C -0.031 4.031 24 N -0.208 5.208 25 C 0.130 3.870 26 O -0.286 6.286 27 C -0.151 4.151 28 C -0.116 4.116 29 C -0.133 4.133 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.241 0.759 40 H 0.164 0.836 41 H 0.188 0.812 42 H 0.261 0.739 43 H 0.172 0.828 44 H 0.138 0.862 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.279 -5.977 -23.862 25.955 hybrid contribution -0.182 -0.688 0.278 0.764 sum 8.097 -6.665 -23.584 25.810 Atomic orbital electron populations 1.22393 0.97654 1.01222 1.00759 1.19232 0.92365 0.95293 0.83151 0.91626 1.42863 1.79888 1.09362 1.06786 1.19056 1.37196 0.95657 0.85539 0.89043 1.24658 1.01298 0.97447 0.95557 1.69689 1.52336 1.35587 1.00265 0.86598 0.78483 0.86788 0.76894 1.20999 1.21632 1.20436 1.20572 0.95045 0.93950 0.95872 1.21053 0.99558 1.00067 0.92941 1.20974 0.99200 0.93418 0.98091 1.19632 1.04219 0.93912 0.95559 1.20220 0.79058 1.00399 0.95887 1.46058 1.09493 1.59267 1.21747 1.18118 0.86181 0.78241 0.83147 1.90799 1.69158 1.50061 1.30537 1.20277 0.93953 0.98909 0.95046 1.22428 0.96134 1.00577 0.98095 1.22578 0.91324 0.93168 0.96053 1.67079 1.42356 1.09490 1.01868 1.19060 0.87393 0.92028 0.88562 1.84811 1.72376 1.35303 1.36096 1.22259 0.94085 0.98174 1.00623 1.21020 0.98282 0.99535 0.92787 1.21060 0.99851 0.94488 0.97864 0.93421 0.91843 0.93951 0.80456 0.92966 0.85721 0.86202 0.90358 0.90392 0.75928 0.83614 0.81221 0.73883 0.82800 0.86230 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.47 37.16 0.35 -2.30 16 2 C 0.21 3.75 3.09 -69.08 -0.21 3.54 16 3 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 4 N -0.75 -16.66 4.87 -54.55 -0.27 -16.92 16 5 C -0.24 -6.60 10.41 -15.06 -0.16 -6.76 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 9 Si 0.88 21.37 27.74 -169.99 -4.71 16.66 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 13 C -0.05 -0.80 4.95 -104.63 -0.52 -1.32 16 14 C -0.12 -1.47 9.67 -39.58 -0.38 -1.86 16 15 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 16 C -0.13 -1.38 5.25 -104.62 -0.55 -1.93 16 17 C 0.17 1.54 5.80 -5.19 -0.03 1.51 16 18 N -0.71 -6.16 5.51 -62.32 -0.34 -6.51 16 19 C 0.56 5.71 7.80 -12.18 -0.10 5.62 16 20 O -0.53 -7.10 16.44 5.36 0.09 -7.01 16 21 C -0.07 -0.62 5.91 -104.67 -0.62 -1.24 16 22 C -0.15 -1.05 9.61 -39.03 -0.38 -1.43 16 23 C 0.13 0.92 11.17 -17.61 -0.20 0.72 16 24 N -0.49 -4.68 10.36 -13.38 -0.14 -4.82 16 25 C 0.31 2.79 7.74 -17.16 -0.13 2.66 16 26 O -0.48 -3.66 13.56 -18.77 -0.25 -3.92 16 27 C -0.13 -1.15 9.61 -38.84 -0.37 -1.52 16 28 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 29 C -0.11 -1.64 9.06 -39.58 -0.36 -2.00 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.36 7.93 3.93 -40.82 -0.16 7.77 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.12 1.39 8.04 -52.49 -0.42 0.96 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.40 2.87 6.60 -40.82 -0.27 2.60 16 40 H 0.15 0.67 6.53 -52.49 -0.34 0.33 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.40 0.97 9.06 45.56 0.41 1.39 16 43 H 0.15 1.31 7.74 -52.48 -0.41 0.91 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.12 1.90 6.92 -52.49 -0.36 1.54 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -34.81 385.51 -8.49 -43.30 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.93 Total: 10.26 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -4.51 Total: -9.17 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.03 Total: -55.93 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.17 Total: -10.93 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.81 -8.49 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724740857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.481 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds