Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47395 * 89.99619 * 9 7 5 11 11 H 1.48493 * 109.46907 * 209.99948 * 9 7 5 12 12 H 1.48506 * 109.46912 * 329.99546 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09004 * 109.51847 * 184.89878 * 13 2 1 15 15 C 1.53304 * 109.51243 * 64.74572 * 13 2 1 16 16 N 1.47154 * 108.38410 * 187.77398 * 15 13 2 17 17 C 1.34775 * 120.98120 * 230.50975 * 16 15 13 18 18 O 1.21285 * 120.00203 * 0.03183 * 17 16 15 19 19 C 1.50698 * 119.99919 * 180.02562 * 17 16 15 20 20 N 1.46503 * 109.47390 * 180.02562 * 19 17 16 21 21 C 1.36370 * 125.95902 * 269.69240 * 20 19 17 22 22 O 1.35622 * 125.99225 * 0.03554 * 21 20 19 23 23 N 1.30917 * 108.01991 * 179.88234 * 21 20 19 24 24 N 1.40115 * 107.93497 * 0.37042 * 23 21 20 25 25 C 1.30896 * 107.94529 * 359.76435 * 24 23 21 26 26 O 1.35627 * 125.99227 * 179.97438 * 25 24 23 27 27 C 1.47147 * 118.03573 * 50.53922 * 16 15 13 28 28 C 1.53297 * 108.38372 * 309.46025 * 27 16 15 29 29 O 1.42959 * 109.51491 * 305.00226 * 13 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.67912 * 307.49997 * 15 13 2 36 36 H 1.08997 * 109.67809 * 68.05247 * 15 13 2 37 37 H 1.09006 * 109.47144 * 300.00351 * 19 17 16 38 38 H 1.09000 * 109.47255 * 60.00234 * 19 17 16 39 39 H 0.96695 * 114.00702 * 90.00225 * 22 21 20 40 40 H 0.96697 * 114.00553 * 270.02677 * 26 25 24 41 41 H 1.08997 * 109.68646 * 189.73520 * 27 16 15 42 42 H 1.08997 * 109.71486 * 69.20057 * 27 16 15 43 43 H 1.08997 * 109.51351 * 292.37644 * 28 27 16 44 44 H 1.09004 * 109.55695 * 172.25149 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.5210 0.1787 5.8861 11 1 3.8932 -0.3235 5.9147 12 1 3.0941 1.6951 4.8343 13 6 2.0400 -0.7212 -1.2491 14 1 3.1265 -0.7983 -1.2071 15 6 1.6295 0.0664 -2.4987 16 7 1.9649 -0.7374 -3.6848 17 6 2.6674 -0.2077 -4.7058 18 8 3.0336 0.9474 -4.6551 19 6 2.9981 -1.0508 -5.9102 20 7 3.7623 -0.2514 -6.8711 21 6 3.2399 0.5005 -7.8818 22 8 1.9226 0.6396 -8.1730 23 7 4.2328 1.0672 -8.5198 24 7 5.4263 0.6620 -7.9078 25 6 5.1202 -0.1338 -6.9145 26 8 5.9995 -0.7362 -6.0758 27 6 1.5099 -2.1362 -3.7236 28 6 1.9262 -2.8165 -2.4145 29 8 1.4706 -2.0311 -1.3103 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 3.2468 -2.3964 4.2425 35 1 0.5567 0.2576 -2.4760 36 1 2.1709 1.0119 -2.5309 37 1 3.5920 -1.9107 -5.6000 38 1 2.0754 -1.3959 -6.3767 39 1 1.4943 1.3761 -7.7157 40 1 6.2973 -1.6057 -6.3764 41 1 1.9719 -2.6493 -4.5670 42 1 0.4251 -2.1673 -3.8247 43 1 3.0123 -2.9011 -2.3775 44 1 1.4817 -3.8104 -2.3623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725322423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = -30.354426 kcal Electronic energy + Delta-G solvation = -30576.996679 eV Core-core repulsion = 26147.918805 eV Total energy + Delta-G solvation = -4429.077874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.69903 -40.63785 -38.70291 -38.56787 -37.47334 -35.73543 -34.81333 -34.75499 -32.61424 -30.58707 -29.93798 -29.26936 -28.44309 -26.88655 -24.83764 -23.64753 -23.17075 -22.83044 -22.21321 -20.16529 -19.77490 -19.29457 -18.88789 -18.09172 -17.40491 -17.15716 -16.73853 -16.34940 -16.04428 -15.85886 -15.72543 -15.26097 -14.75798 -14.66855 -14.33425 -13.93490 -13.82086 -13.41665 -13.31048 -13.03930 -12.93624 -12.81512 -12.70435 -12.38473 -12.13815 -11.75421 -11.47919 -11.26182 -11.05353 -10.92439 -10.92099 -10.81322 -10.67475 -10.39412 -10.17282 -10.01202 -9.92717 -9.78312 -9.72074 -8.95396 -8.78688 -7.00045 -5.79166 -3.08303 1.03699 1.33501 1.86060 1.99054 2.40963 2.85863 3.32375 3.41607 3.47111 3.48466 3.73864 3.77335 3.87782 4.26873 4.44517 4.55961 4.57580 4.80168 4.81208 4.84461 4.95427 5.13720 5.19594 5.25859 5.47634 5.50982 5.53214 5.62427 5.66159 5.79206 5.87987 5.98490 6.16883 6.35445 6.54420 6.62179 6.72364 6.81468 6.91535 7.06602 7.30237 7.51896 7.56559 7.66738 8.38921 9.51069 10.07210 10.43662 11.43184 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002449 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.103379 B =11432.790185 C =11791.623843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.083 3.917 16 N -0.605 5.605 17 C 0.499 3.501 18 O -0.523 6.523 19 C 0.084 3.916 20 N -0.499 5.499 21 C 0.415 3.585 22 O -0.438 6.438 23 N -0.293 5.293 24 N -0.294 5.294 25 C 0.419 3.581 26 O -0.431 6.431 27 C 0.068 3.932 28 C 0.045 3.955 29 O -0.355 6.355 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.415 0.585 40 H 0.411 0.589 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -4.164 -22.944 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.017 3.983 14 H 0.083 0.917 15 C -0.040 4.040 16 N -0.340 5.340 17 C 0.284 3.716 18 O -0.399 6.399 19 C -0.044 4.044 20 N -0.219 5.219 21 C 0.105 3.895 22 O -0.239 6.239 23 N -0.136 5.136 24 N -0.138 5.138 25 C 0.109 3.891 26 O -0.231 6.231 27 C -0.055 4.055 28 C -0.033 4.033 29 O -0.273 6.273 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.274 0.726 40 H 0.269 0.731 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.307 -2.601 -23.675 23.929 hybrid contribution -0.616 -0.844 1.936 2.200 sum -2.923 -3.445 -21.739 22.204 Atomic orbital electron populations 1.22426 0.98609 1.01638 0.99598 1.20189 0.92861 0.94629 0.84908 0.92272 1.42341 1.77881 1.10944 1.04854 1.19239 1.36782 0.93874 0.87303 0.91157 1.24741 1.02052 0.95973 0.98053 1.69672 1.50699 1.08651 1.28848 0.86201 0.77302 0.78834 0.83918 1.21708 1.21785 1.20734 1.23005 0.97752 0.82919 0.94648 0.91714 1.22591 1.02212 0.95833 0.83324 1.48159 1.54129 1.12993 1.18691 1.20550 0.78664 0.88231 0.84117 1.90803 1.52127 1.17368 1.79556 1.21765 0.99538 0.94110 0.88978 1.46638 1.07370 1.41713 1.26197 1.21269 0.87261 0.93640 0.87281 1.84880 1.14280 1.56271 1.68448 1.78379 0.93431 1.19616 1.22188 1.78380 1.14940 1.14169 1.06309 1.21280 0.78638 0.97048 0.92153 1.85048 1.56694 1.37742 1.43594 1.22621 1.01392 0.81228 1.00273 1.22908 0.99662 0.95371 0.85361 1.88135 1.67637 1.25680 1.45863 0.92398 0.94742 0.92783 0.77680 0.93523 0.89662 0.88084 0.85553 0.85150 0.72569 0.73083 0.89474 0.89634 0.92699 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.06 37.16 0.34 -2.46 16 2 C 0.18 3.50 2.77 -67.94 -0.19 3.31 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.72 -17.59 5.10 -53.43 -0.27 -17.87 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 9 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.08 1.18 2.61 -26.58 -0.07 1.11 16 14 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.08 1.04 5.82 -3.53 -0.02 1.02 16 16 N -0.61 -5.93 3.02 -172.28 -0.52 -6.45 16 17 C 0.50 5.14 7.78 -10.99 -0.09 5.06 16 18 O -0.52 -7.79 15.90 5.55 0.09 -7.71 16 19 C 0.08 0.52 4.87 -5.19 -0.03 0.49 16 20 N -0.50 -4.66 2.25 -121.35 -0.27 -4.93 16 21 C 0.42 4.35 9.15 -88.80 -0.81 3.54 16 22 O -0.44 -3.21 13.57 -18.56 -0.25 -3.47 16 23 N -0.29 -3.95 12.72 29.65 0.38 -3.57 16 24 N -0.29 -4.03 12.72 29.65 0.38 -3.65 16 25 C 0.42 4.55 9.15 -88.82 -0.81 3.74 16 26 O -0.43 -3.55 13.58 -18.58 -0.25 -3.80 16 27 C 0.07 0.45 6.54 -3.54 -0.02 0.43 16 28 C 0.05 0.43 6.98 37.31 0.26 0.69 16 29 O -0.36 -5.27 9.24 -35.23 -0.33 -5.59 16 30 H 0.06 1.05 7.56 -51.93 -0.39 0.65 16 31 H 0.03 0.48 6.41 -51.93 -0.33 0.15 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.39 10.27 7.58 -40.82 -0.31 9.96 16 34 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.09 1.01 6.26 -51.93 -0.33 0.68 16 36 H 0.10 1.41 7.08 -51.93 -0.37 1.04 16 37 H 0.13 0.42 7.66 -51.93 -0.40 0.02 16 38 H 0.13 0.44 8.01 -51.93 -0.42 0.02 16 39 H 0.42 1.47 9.06 45.56 0.41 1.88 16 40 H 0.41 0.74 9.06 45.56 0.41 1.16 16 41 H 0.09 0.25 6.05 -51.93 -0.31 -0.07 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -39.28 371.88 -5.54 -44.82 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.11 Total: 6.74 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.69 Total: 9.76 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.41 Total: -63.52 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.74 Total: -20.56 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.28 -5.54 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725322423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.470 kcal (2) G-P(sol) polarization free energy of solvation -39.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds