Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47057 * 2 1 4 4 C 1.34121 * 125.69872 * 125.00438 * 3 2 1 5 5 C 1.38604 * 107.34080 * 180.02562 * 4 3 2 6 6 C 1.46952 * 126.48385 * 180.02562 * 5 4 3 7 7 O 1.21423 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.49219 * 119.99495 * 179.97438 * 6 5 4 9 9 O 1.21389 * 120.00328 * 355.46806 * 8 6 5 10 10 N 1.34775 * 119.99772 * 175.46306 * 8 6 5 11 11 C 1.46500 * 120.00094 * 5.85503 * 10 8 6 12 12 C 1.50697 * 109.47673 * 276.23363 * 11 10 8 13 13 H 1.08005 * 119.99678 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00589 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00020 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00326 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46861 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47074 * 119.99822 * 16 14 12 19 19 H 1.48497 * 109.47206 * 239.99906 * 16 14 12 20 20 C 1.39726 * 120.00250 * 185.85944 * 10 8 6 21 21 C 1.38937 * 120.07253 * 352.81906 * 20 10 8 22 22 C 1.38092 * 119.92172 * 180.27540 * 21 20 10 23 23 C 1.38299 * 120.07872 * 359.52141 * 22 21 20 24 24 C 1.50693 * 119.92581 * 180.25295 * 23 22 21 25 25 C 1.38300 * 120.14721 * 0.45811 * 23 22 21 26 26 C 1.38096 * 120.07636 * 359.79610 * 25 23 22 27 27 C 1.41550 * 107.02547 * 0.25947 * 5 4 3 28 28 N 1.30355 * 107.99181 * 359.55670 * 27 5 4 29 29 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46903 * 299.99616 * 1 2 3 31 31 H 1.08994 * 109.47464 * 59.99657 * 1 2 3 32 32 H 1.09004 * 109.46903 * 240.00384 * 2 1 3 33 33 H 1.08994 * 109.47464 * 120.00343 * 2 1 3 34 34 H 1.07999 * 126.32772 * 0.02562 * 4 3 2 35 35 H 1.09007 * 109.47006 * 36.23342 * 11 10 8 36 36 H 1.08997 * 109.47247 * 156.23353 * 11 10 8 37 37 H 0.97000 * 120.00722 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.03634 * 0.02562 * 21 20 10 39 39 H 1.08007 * 119.95981 * 179.75059 * 22 21 20 40 40 H 1.08997 * 109.47037 * 270.20660 * 24 23 22 41 41 H 1.09001 * 109.47173 * 30.20969 * 24 23 22 42 42 H 1.09002 * 109.47401 * 150.20419 * 24 23 22 43 43 H 1.08004 * 119.95646 * 179.77239 * 25 23 22 44 44 H 1.08002 * 120.03636 * 179.97438 * 26 25 23 45 45 H 1.07996 * 126.00438 * 179.74052 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8682 1.9108 0.8922 5 6 3.0702 3.2347 0.5349 6 6 3.9285 4.2056 1.2279 7 8 4.5465 3.8714 2.2182 8 6 4.0406 5.6021 0.7144 9 8 3.4891 5.9143 -0.3209 10 7 4.7543 6.5169 1.4001 11 6 5.5245 6.1119 2.5787 12 6 4.6212 6.0858 3.7846 13 1 3.5776 6.3446 3.6833 14 6 5.1268 5.7305 5.0171 15 7 6.3973 5.4138 5.1403 16 14 4.0069 5.6975 6.5119 17 1 2.6328 6.0917 6.1096 18 1 3.9822 4.3264 7.0817 19 1 4.5154 6.6487 7.5325 20 6 4.7595 7.8518 0.9872 21 6 4.1544 8.2124 -0.2104 22 6 4.1663 9.5316 -0.6183 23 6 4.7710 10.4950 0.1685 24 6 4.7770 11.9345 -0.2772 25 6 5.3738 10.1395 1.3614 26 6 5.3701 8.8213 1.7728 27 6 2.2889 3.4760 -0.6205 28 7 1.6755 2.3683 -0.9304 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.3130 1.4001 1.7334 35 1 5.9420 5.1182 2.4159 36 1 6.3335 6.8229 2.7460 37 1 6.7529 5.1635 6.0073 38 1 3.6788 7.4611 -0.8235 39 1 3.6997 9.8120 -1.5511 40 1 5.6652 12.1246 -0.8796 41 1 3.8853 12.1346 -0.8714 42 1 4.7846 12.5855 0.5970 43 1 5.8483 10.8938 1.9716 44 1 5.8414 8.5443 2.7042 45 1 2.2162 4.4125 -1.1535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119874607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 64.996820 kcal Electronic energy + Delta-G solvation = -29342.369438 eV Core-core repulsion = 25328.275567 eV Total energy + Delta-G solvation = -4014.093871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27145 -40.34054 -38.50424 -37.44656 -35.49162 -34.51614 -32.72946 -31.32627 -30.48659 -30.39547 -29.75074 -27.52555 -26.65852 -24.89821 -23.73836 -23.29712 -21.89308 -21.64838 -20.61130 -20.14171 -18.85320 -17.14415 -16.88866 -16.72798 -16.13605 -15.65599 -15.31730 -14.88447 -14.81226 -14.61215 -14.41067 -14.24275 -13.84896 -13.56774 -13.47003 -13.17672 -13.08360 -12.92614 -12.65385 -12.55337 -12.39172 -12.31353 -11.92878 -11.74033 -11.72782 -11.58655 -11.43757 -10.97764 -10.95250 -10.70243 -10.52537 -10.23761 -10.02762 -9.68714 -9.49005 -9.02842 -8.60931 -8.51695 -8.36310 -8.21364 -7.15742 -6.12028 -4.15436 1.19454 1.79276 1.99475 2.18920 2.36120 2.91411 3.25223 3.31525 3.33401 3.39979 3.94806 4.29049 4.36638 4.44958 4.65905 4.69705 4.81005 4.91043 5.13993 5.24218 5.29048 5.30026 5.33995 5.39120 5.49872 5.57837 5.64208 5.66255 5.80160 5.85066 5.92270 5.96857 6.10855 6.20688 6.25474 6.52521 6.68854 6.79554 6.85640 6.88083 6.96504 7.12359 7.24057 7.32233 7.64892 7.70997 7.79366 7.93384 8.04998 8.08932 8.58860 8.85549 9.47822 10.96233 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004151 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.081921 B = 6743.597775 C = 9474.542804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.365 5.365 4 C 0.124 3.876 5 C -0.299 4.299 6 C 0.400 3.600 7 O -0.373 6.373 8 C 0.491 3.509 9 O -0.526 6.526 10 N -0.506 5.506 11 C 0.218 3.782 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.072 3.928 15 N -0.887 5.887 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.156 3.844 21 C -0.172 4.172 22 C -0.108 4.108 23 C -0.128 4.128 24 C -0.105 4.105 25 C -0.104 4.104 26 C -0.137 4.137 27 C 0.109 3.891 28 N -0.311 5.311 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.188 0.812 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.181 0.819 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.118 0.882 44 H 0.139 0.861 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -3.955 -10.082 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.144 5.144 4 C -0.027 4.027 5 C -0.313 4.313 6 C 0.270 3.730 7 O -0.242 6.242 8 C 0.279 3.721 9 O -0.408 6.408 10 N -0.225 5.225 11 C 0.100 3.900 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.131 4.131 15 N -0.526 5.526 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.060 3.940 21 C -0.191 4.191 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.161 4.161 25 C -0.123 4.123 26 C -0.157 4.157 27 C -0.079 4.079 28 N -0.130 5.130 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.205 0.795 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.197 0.803 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.739 -4.870 -10.685 13.539 hybrid contribution 0.068 0.409 1.778 1.825 sum -6.670 -4.460 -8.907 11.989 Atomic orbital electron populations 1.22053 0.93573 1.02852 1.03855 1.21773 0.96326 0.77245 1.04053 1.48599 1.34416 1.10600 1.20738 1.23202 0.91522 0.93813 0.94175 1.20571 1.11857 0.94829 1.04005 1.21064 0.81047 0.86895 0.83998 1.90787 1.35169 1.78838 1.19372 1.20822 0.79330 0.87823 0.84111 1.90183 1.47520 1.79255 1.23796 1.46077 1.42895 1.05126 1.28445 1.20216 0.91404 0.98260 0.80114 1.21200 0.95862 1.46539 0.92083 0.92482 1.24790 0.95023 0.94672 0.98636 1.69921 1.12607 1.45404 1.24632 0.86505 0.80956 0.77723 0.82676 1.19805 1.20855 1.20875 1.18143 0.97923 0.83829 0.94082 1.22761 1.01423 0.98161 0.96799 1.20906 0.99964 0.92706 0.99116 1.19822 1.01371 0.95597 0.96083 1.20670 1.01561 0.92873 1.01039 1.20738 1.00001 0.95456 0.96092 1.21141 1.01821 0.92056 1.00670 1.24689 0.91745 0.97169 0.94272 1.77110 1.24869 0.97332 1.13737 0.90677 0.91922 0.90919 0.89470 0.88394 0.79538 0.90994 0.93968 0.92700 0.80312 0.86683 0.92012 0.92229 0.92173 0.86432 0.84285 0.77715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.09 37.16 0.37 -0.87 16 2 C 0.13 1.01 7.20 -4.04 -0.03 0.98 16 3 N -0.36 -4.59 3.64 -60.69 -0.22 -4.81 16 4 C 0.12 1.72 11.27 -16.42 -0.18 1.54 16 5 C -0.30 -5.03 6.12 -104.97 -0.64 -5.67 16 6 C 0.40 7.98 7.03 -31.49 -0.22 7.76 16 7 O -0.37 -8.43 12.74 5.43 0.07 -8.36 16 8 C 0.49 10.18 7.60 -11.69 -0.09 10.09 16 9 O -0.53 -10.29 10.66 5.46 0.06 -10.23 16 10 N -0.51 -11.19 2.69 -115.32 -0.31 -11.50 16 11 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16 12 C -0.52 -13.81 7.91 -34.44 -0.27 -14.08 16 13 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 15 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C 0.16 3.23 6.49 -83.75 -0.54 2.68 16 21 C -0.17 -3.23 9.05 -39.38 -0.36 -3.59 16 22 C -0.11 -1.75 9.69 -39.61 -0.38 -2.14 16 23 C -0.13 -1.98 5.88 -104.58 -0.62 -2.59 16 24 C -0.10 -1.22 10.01 36.00 0.36 -0.86 16 25 C -0.10 -1.74 9.69 -39.61 -0.38 -2.13 16 26 C -0.14 -2.69 9.16 -39.38 -0.36 -3.05 16 27 C 0.11 1.72 11.13 -16.92 -0.19 1.53 16 28 N -0.31 -4.63 12.31 30.90 0.38 -4.24 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.07 1.88 5.74 -51.93 -0.30 1.58 16 36 H 0.04 1.07 6.17 -51.93 -0.32 0.75 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.18 3.40 4.53 -56.24 -0.25 3.15 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 44 H 0.14 2.91 6.22 -52.49 -0.33 2.59 16 45 H 0.21 3.14 6.27 -52.49 -0.33 2.81 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -31.10 378.37 -7.98 -39.07 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.71 Total: 5.54 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.65 Total: -3.22 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.59 Total: -44.64 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.13 Total: -18.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.10 -7.98 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119874607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.071 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds