Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47057 * 2 1 4 4 C 1.34121 * 125.69872 * 125.00438 * 3 2 1 5 5 C 1.38604 * 107.34080 * 180.02562 * 4 3 2 6 6 C 1.46952 * 126.48385 * 180.02562 * 5 4 3 7 7 O 1.21423 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.49219 * 119.99495 * 179.97438 * 6 5 4 9 9 O 1.21389 * 120.00328 * 355.46806 * 8 6 5 10 10 N 1.34775 * 119.99772 * 175.46306 * 8 6 5 11 11 C 1.46500 * 120.00094 * 5.85503 * 10 8 6 12 12 C 1.50697 * 109.47673 * 276.23363 * 11 10 8 13 13 H 1.08005 * 119.99678 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00589 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00020 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00326 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46861 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47074 * 119.99822 * 16 14 12 19 19 H 1.48497 * 109.47206 * 239.99906 * 16 14 12 20 20 C 1.39726 * 120.00250 * 185.85944 * 10 8 6 21 21 C 1.38937 * 120.07253 * 352.81906 * 20 10 8 22 22 C 1.38092 * 119.92172 * 180.27540 * 21 20 10 23 23 C 1.38299 * 120.07872 * 359.52141 * 22 21 20 24 24 C 1.50693 * 119.92581 * 180.25295 * 23 22 21 25 25 C 1.38300 * 120.14721 * 0.45811 * 23 22 21 26 26 C 1.38096 * 120.07636 * 359.79610 * 25 23 22 27 27 C 1.41550 * 107.02547 * 0.25947 * 5 4 3 28 28 N 1.30355 * 107.99181 * 359.55670 * 27 5 4 29 29 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46903 * 299.99616 * 1 2 3 31 31 H 1.08994 * 109.47464 * 59.99657 * 1 2 3 32 32 H 1.09004 * 109.46903 * 240.00384 * 2 1 3 33 33 H 1.08994 * 109.47464 * 120.00343 * 2 1 3 34 34 H 1.07999 * 126.32772 * 0.02562 * 4 3 2 35 35 H 1.09007 * 109.47006 * 36.23342 * 11 10 8 36 36 H 1.08997 * 109.47247 * 156.23353 * 11 10 8 37 37 H 0.97000 * 120.00722 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.03634 * 0.02562 * 21 20 10 39 39 H 1.08007 * 119.95981 * 179.75059 * 22 21 20 40 40 H 1.08997 * 109.47037 * 270.20660 * 24 23 22 41 41 H 1.09001 * 109.47173 * 30.20969 * 24 23 22 42 42 H 1.09002 * 109.47401 * 150.20419 * 24 23 22 43 43 H 1.08004 * 119.95646 * 179.77239 * 25 23 22 44 44 H 1.08002 * 120.03636 * 179.97438 * 26 25 23 45 45 H 1.07996 * 126.00438 * 179.74052 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8682 1.9108 0.8922 5 6 3.0702 3.2347 0.5349 6 6 3.9285 4.2056 1.2279 7 8 4.5465 3.8714 2.2182 8 6 4.0406 5.6021 0.7144 9 8 3.4891 5.9143 -0.3209 10 7 4.7543 6.5169 1.4001 11 6 5.5245 6.1119 2.5787 12 6 4.6212 6.0858 3.7846 13 1 3.5776 6.3446 3.6833 14 6 5.1268 5.7305 5.0171 15 7 6.3973 5.4138 5.1403 16 14 4.0069 5.6975 6.5119 17 1 2.6328 6.0917 6.1096 18 1 3.9822 4.3264 7.0817 19 1 4.5154 6.6487 7.5325 20 6 4.7595 7.8518 0.9872 21 6 4.1544 8.2124 -0.2104 22 6 4.1663 9.5316 -0.6183 23 6 4.7710 10.4950 0.1685 24 6 4.7770 11.9345 -0.2772 25 6 5.3738 10.1395 1.3614 26 6 5.3701 8.8213 1.7728 27 6 2.2889 3.4760 -0.6205 28 7 1.6755 2.3683 -0.9304 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.3130 1.4001 1.7334 35 1 5.9420 5.1182 2.4159 36 1 6.3335 6.8229 2.7460 37 1 6.7529 5.1635 6.0073 38 1 3.6788 7.4611 -0.8235 39 1 3.6997 9.8120 -1.5511 40 1 5.6652 12.1246 -0.8796 41 1 3.8853 12.1346 -0.8714 42 1 4.7846 12.5855 0.5970 43 1 5.8483 10.8938 1.9716 44 1 5.8414 8.5443 2.7042 45 1 2.2162 4.4125 -1.1535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119874607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 48.091377 kcal Electronic energy + Delta-G solvation = -29343.102513 eV Core-core repulsion = 25328.275567 eV Total energy + Delta-G solvation = -4014.826946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.53176 -41.81858 -39.95848 -38.98817 -37.09875 -35.41129 -34.69134 -32.71311 -31.80684 -31.59401 -30.85305 -29.40480 -27.98697 -26.17362 -25.31218 -24.51079 -23.34164 -23.03666 -21.76333 -21.43023 -20.26304 -18.79804 -18.54587 -18.20752 -17.68227 -16.79715 -16.67214 -16.50493 -16.30833 -16.03222 -15.92375 -15.40281 -15.04903 -14.90380 -14.65279 -14.59053 -14.38708 -14.37439 -14.24051 -13.84661 -13.54657 -13.32196 -13.23491 -12.98309 -12.93912 -12.91532 -12.76189 -12.62747 -12.41580 -12.20085 -11.95411 -11.88084 -11.80124 -11.25016 -10.74445 -10.60412 -10.58234 -9.86202 -9.77403 -9.74008 -8.69722 -8.17193 -6.28796 -0.26706 0.47896 0.58279 0.90396 1.36908 1.37153 1.38982 1.48466 1.52809 1.81306 2.38943 2.46078 2.97842 3.04188 3.14455 3.54401 3.79031 4.03842 4.05950 4.07582 4.11024 4.13329 4.28989 4.36471 4.43114 4.45924 4.50468 4.61357 4.72913 4.81148 4.89474 4.91929 4.94961 4.96552 5.20475 5.21573 5.22711 5.29301 5.41005 5.46731 5.56070 5.66563 5.74665 5.83176 5.86840 6.01301 6.21161 6.30895 6.41178 6.54938 6.74678 6.99342 7.37475 8.89623 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.004151 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.081921 B = 6743.597775 C = 9474.542804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.351 5.351 4 C 0.143 3.857 5 C -0.332 4.332 6 C 0.405 3.595 7 O -0.413 6.413 8 C 0.480 3.520 9 O -0.518 6.518 10 N -0.517 5.517 11 C 0.239 3.761 12 C -0.521 4.521 13 H 0.040 0.960 14 C 0.028 3.972 15 N -0.917 5.917 16 Si 0.952 3.048 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.274 1.274 20 C 0.121 3.879 21 C -0.182 4.182 22 C -0.105 4.105 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.104 4.104 26 C -0.158 4.158 27 C 0.106 3.894 28 N -0.319 5.319 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.214 0.786 35 H 0.054 0.946 36 H 0.026 0.974 37 H 0.267 0.733 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.143 0.857 44 H 0.114 0.886 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -3.860 -10.853 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.129 5.129 4 C -0.011 4.011 5 C -0.346 4.346 6 C 0.278 3.722 7 O -0.285 6.285 8 C 0.269 3.731 9 O -0.399 6.399 10 N -0.237 5.237 11 C 0.120 3.880 12 C -0.559 4.559 13 H 0.059 0.941 14 C -0.172 4.172 15 N -0.556 5.556 16 Si 0.778 3.222 17 H -0.201 1.201 18 H -0.201 1.201 19 H -0.199 1.199 20 C 0.026 3.974 21 C -0.201 4.201 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.159 4.159 25 C -0.122 4.122 26 C -0.178 4.178 27 C -0.081 4.081 28 N -0.139 5.139 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.149 0.851 34 H 0.230 0.770 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.160 0.840 44 H 0.132 0.868 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.183 -4.773 -11.508 14.905 hybrid contribution 0.437 0.366 1.864 1.949 sum -7.746 -4.408 -9.643 13.131 Atomic orbital electron populations 1.22034 0.93097 1.04404 1.02356 1.22332 0.96740 0.74834 1.06607 1.49051 1.32984 1.11668 1.19230 1.23549 0.90493 0.92773 0.94264 1.20453 1.13203 0.95729 1.05188 1.21314 0.80601 0.86858 0.83443 1.90763 1.37282 1.79240 1.21165 1.21179 0.79297 0.88317 0.84328 1.90173 1.47072 1.79374 1.23267 1.45988 1.43328 1.06260 1.28080 1.19719 0.90955 0.96665 0.80710 1.21236 0.95134 1.46358 0.93186 0.94136 1.25485 0.96272 0.94343 1.01086 1.70012 1.13940 1.46260 1.25378 0.85603 0.78970 0.78078 0.79598 1.20070 1.20085 1.19905 1.18466 0.99992 0.83362 0.95546 1.22773 1.01674 0.99566 0.96091 1.21290 0.99283 0.91554 1.00224 1.20305 0.99003 0.97767 0.94803 1.20749 1.03223 0.89802 1.02106 1.21057 0.99708 0.94493 0.96992 1.21104 1.02909 0.93602 1.00167 1.24623 0.91831 0.97602 0.94076 1.77071 1.24831 0.97501 1.14507 0.87616 0.93105 0.92670 0.87673 0.85139 0.76991 0.92861 0.95602 0.92434 0.80914 0.83420 0.90310 0.90462 0.90881 0.83970 0.86769 0.78027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 10.09 71.98 0.73 -1.30 16 2 C 0.11 1.46 7.20 86.38 0.62 2.08 16 3 N -0.35 -8.22 3.64 -345.92 -1.26 -9.48 16 4 C 0.14 3.82 11.27 84.43 0.95 4.77 16 5 C -0.33 -11.37 6.12 -20.09 -0.12 -11.49 16 6 C 0.41 17.00 7.03 27.51 0.19 17.19 16 7 O -0.41 -19.69 12.74 -3.47 -0.04 -19.74 16 8 C 0.48 21.08 7.60 87.20 0.66 21.75 16 9 O -0.52 -21.15 10.66 -3.37 -0.04 -21.19 16 10 N -0.52 -24.33 2.69 -637.11 -1.72 -26.05 16 11 C 0.24 12.58 4.23 85.63 0.36 12.94 16 12 C -0.52 -29.13 7.91 25.60 0.20 -28.92 16 13 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 14 C 0.03 1.58 5.46 84.65 0.46 2.04 16 15 N -0.92 -52.94 13.29 21.44 0.28 -52.65 16 16 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.12 5.24 6.49 38.21 0.25 5.49 16 21 C -0.18 -6.91 9.05 22.40 0.20 -6.71 16 22 C -0.11 -3.22 9.69 22.25 0.22 -3.01 16 23 C -0.12 -3.38 5.88 -19.84 -0.12 -3.49 16 24 C -0.10 -1.97 10.01 71.23 0.71 -1.26 16 25 C -0.10 -3.41 9.69 22.25 0.22 -3.19 16 26 C -0.16 -6.48 9.16 22.40 0.21 -6.28 16 27 C 0.11 3.39 11.13 85.73 0.95 4.34 16 28 N -0.32 -9.26 12.31 -56.15 -0.69 -9.95 16 29 H 0.11 0.70 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.07 8.14 -2.38 -0.02 1.06 16 33 H 0.13 0.91 8.06 -2.39 -0.02 0.89 16 34 H 0.21 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.05 3.01 5.74 -2.38 -0.01 3.00 16 36 H 0.03 1.43 6.17 -2.39 -0.01 1.41 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.17 6.72 4.53 -62.32 -0.28 6.44 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 42 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 43 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.11 5.18 6.22 -2.91 -0.02 5.16 16 45 H 0.20 6.39 6.27 -2.91 -0.02 6.37 16 Total: -1.00 -70.99 378.37 6.01 -64.97 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.76 Total: 22.94 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.70 Total: 4.95 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.38 Total: -98.13 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.08 Total: -40.93 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.99 6.01 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119874607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.064 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds