Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99736 * 2 1 4 4 C 1.52995 * 109.47425 * 274.99815 * 3 2 1 5 5 O 1.42903 * 109.46972 * 65.00259 * 4 3 2 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 S 1.65594 * 119.99787 * 179.97438 * 2 1 3 14 14 O 1.42098 * 104.27934 * 26.07282 * 13 2 1 15 15 O 1.42106 * 104.27567 * 153.93024 * 13 2 1 16 16 C 1.81399 * 104.45306 * 269.99992 * 13 2 1 17 17 C 1.52993 * 109.47519 * 180.02562 * 16 13 2 18 18 C 1.52995 * 109.47223 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47192 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99905 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00211 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99854 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99826 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.46794 * 89.99633 * 23 21 19 25 25 H 1.48494 * 109.46936 * 209.99624 * 23 21 19 26 26 H 1.48502 * 109.47015 * 329.99795 * 23 21 19 27 27 H 1.09000 * 109.47209 * 89.99516 * 1 2 3 28 28 H 1.08995 * 109.47245 * 210.00040 * 1 2 3 29 29 H 1.09004 * 109.47076 * 329.99788 * 1 2 3 30 30 H 1.09006 * 109.46616 * 154.99769 * 3 2 1 31 31 H 1.08996 * 109.47372 * 35.00340 * 3 2 1 32 32 H 1.09005 * 109.47112 * 305.00329 * 4 3 2 33 33 H 1.08993 * 109.47202 * 185.00432 * 4 3 2 34 34 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 35 35 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 41 41 H 1.09000 * 109.47302 * 300.00648 * 16 13 2 42 42 H 1.09004 * 109.46842 * 59.99960 * 16 13 2 43 43 H 1.09000 * 109.47251 * 299.99941 * 17 16 13 44 44 H 1.09004 * 109.47289 * 59.99997 * 17 16 13 45 45 H 1.09005 * 109.47513 * 299.99805 * 18 17 16 46 46 H 1.08997 * 109.47404 * 60.00360 * 18 17 16 47 47 H 0.96998 * 119.99197 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3437 1.7733 -1.4369 5 8 1.0530 2.0820 -1.9670 6 6 1.0771 2.5639 -3.3120 7 6 -0.3299 2.8553 -3.7665 8 6 -0.8732 4.1113 -3.5710 9 6 -2.1636 4.3788 -3.9884 10 6 -2.9105 3.3905 -4.6019 11 6 -2.3691 2.1330 -4.7926 12 6 -1.0770 1.8668 -4.3794 13 16 2.2930 -1.4341 0.0006 14 8 1.3969 -2.3564 -0.6042 15 8 3.5395 -1.1194 -0.6047 16 6 2.5193 -1.8254 1.7574 17 6 3.2819 -3.1449 1.8919 18 6 3.4722 -3.4752 3.3736 19 6 4.2227 -4.7753 3.5061 20 1 4.5326 -5.3125 2.6219 21 6 4.5139 -5.2790 4.7562 22 7 5.1685 -6.4139 4.8717 23 14 3.9773 -4.3503 6.2856 24 1 2.6228 -4.8047 6.6908 25 1 4.9378 -4.6135 7.3870 26 1 3.9446 -2.8944 5.9946 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1858 1.1177 0.4344 31 1 1.6502 2.0043 0.5895 32 1 2.8119 1.0011 -2.0473 33 1 2.9640 2.6695 -1.4460 34 1 1.5189 1.8078 -3.9611 35 1 1.6712 3.4765 -3.3604 36 1 -0.2895 4.8837 -3.0921 37 1 -2.5882 5.3599 -3.8353 38 1 -3.9185 3.5997 -4.9283 39 1 -2.9541 1.3595 -5.2679 40 1 -0.6523 0.8858 -4.5328 41 1 3.0866 -1.0278 2.2372 42 1 1.5451 -1.9178 2.2375 43 1 2.7149 -3.9428 1.4121 44 1 4.2561 -3.0522 1.4119 45 1 4.0389 -2.6775 3.8539 46 1 2.4978 -3.5683 3.8532 47 1 5.3729 -6.7683 5.7512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152828310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = -122.557912 kcal Electronic energy + Delta-G solvation = -27035.447680 eV Core-core repulsion = 23116.372026 eV Total energy + Delta-G solvation = -3919.075654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29584 -38.94434 -38.22749 -37.11798 -36.80110 -36.50114 -34.25322 -32.98625 -31.79126 -30.64052 -30.15392 -27.23332 -26.36281 -25.32503 -23.55797 -23.47881 -22.21855 -22.15512 -19.90673 -18.98058 -18.68990 -17.87424 -17.67339 -17.31939 -17.21867 -16.88273 -16.39450 -16.22667 -16.15389 -15.70176 -15.34851 -15.00521 -14.86965 -14.39349 -14.27482 -14.16851 -13.99830 -13.67568 -13.65632 -13.39084 -13.33878 -13.23417 -13.18271 -13.14762 -12.83091 -12.69673 -12.55680 -12.28737 -12.28498 -11.89931 -11.84979 -11.79980 -11.65456 -11.41943 -11.26800 -10.78016 -10.58531 -9.99090 -9.82596 -9.72728 -8.30363 -6.36501 -0.78188 0.34275 0.49665 1.36711 1.39255 1.50951 1.68804 2.36066 2.59952 2.81895 3.04629 3.12512 3.15602 3.59250 3.83444 3.87921 3.90295 3.91161 4.14685 4.18321 4.28770 4.32631 4.33193 4.42494 4.44317 4.48275 4.58785 4.61857 4.65348 4.74742 4.76855 4.83251 4.92664 4.93996 5.07515 5.09358 5.12706 5.15274 5.32896 5.44766 5.55168 5.61368 5.61862 5.62496 5.67189 6.09311 6.23032 6.24546 6.71619 7.28092 8.86556 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.001960 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.158616 B =14279.213535 C =14305.307387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.994 5.994 3 C 0.120 3.880 4 C 0.035 3.965 5 O -0.387 6.387 6 C 0.098 3.902 7 C -0.104 4.104 8 C -0.108 4.108 9 C -0.129 4.129 10 C -0.121 4.121 11 C -0.132 4.132 12 C -0.119 4.119 13 S 2.612 3.388 14 O -0.992 6.992 15 O -0.985 6.985 16 C -0.608 4.608 17 C -0.104 4.104 18 C -0.005 4.005 19 C -0.545 4.545 20 H 0.029 0.971 21 C 0.000 4.000 22 N -0.952 5.952 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.285 1.285 26 H -0.237 1.237 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.566 28.620 -15.122 35.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.833 5.833 3 C -0.005 4.005 4 C -0.043 4.043 5 O -0.307 6.307 6 C 0.022 3.978 7 C -0.104 4.104 8 C -0.126 4.126 9 C -0.147 4.147 10 C -0.139 4.139 11 C -0.150 4.150 12 C -0.137 4.137 13 S 2.709 3.291 14 O -0.983 6.983 15 O -0.975 6.975 16 C -0.739 4.739 17 C -0.143 4.143 18 C -0.043 4.043 19 C -0.583 4.583 20 H 0.047 0.953 21 C -0.197 4.197 22 N -0.592 5.592 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.211 1.211 26 H -0.160 1.160 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.420 28.038 -15.708 35.646 hybrid contribution 0.417 -0.542 0.879 1.113 sum -15.003 27.496 -14.829 34.656 Atomic orbital electron populations 1.21515 0.77114 1.03690 1.02153 1.57228 1.15888 1.20411 1.89738 1.21655 0.98286 0.85063 0.95517 1.23174 0.85265 1.00083 0.95797 1.87940 1.29089 1.85765 1.27862 1.21386 0.93683 0.99009 0.83731 1.19763 0.95837 0.94769 1.00030 1.21290 0.96109 0.96296 0.98866 1.21480 0.94253 1.00465 0.98457 1.21531 1.00851 0.93105 0.98413 1.21419 0.95244 0.98015 1.00360 1.21257 0.95100 0.98819 0.98502 1.04840 0.72983 0.73102 0.78208 1.93524 1.65414 1.64081 1.75247 1.93522 1.45510 1.83433 1.75052 1.30544 1.11564 1.07175 1.24648 1.21182 0.99275 0.93593 1.00289 1.19507 0.96730 0.95061 0.93042 1.21562 1.36492 1.07180 0.93098 0.95286 1.26135 0.94512 0.95753 1.03270 1.70090 1.42201 1.21803 1.25117 0.85580 0.78428 0.80726 0.77450 1.19008 1.21085 1.16028 0.93604 0.91062 0.88683 0.87168 0.86696 0.94438 0.89687 0.93163 0.90776 0.84611 0.83756 0.83912 0.84614 0.86448 0.82491 0.82944 0.92198 0.91815 0.94760 0.95141 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 9.58 127.77 1.22 3.05 16 2 N -0.99 -20.28 3.10 -539.13 -1.67 -21.95 16 3 C 0.12 1.85 5.72 86.38 0.49 2.35 16 4 C 0.03 0.61 6.28 71.98 0.45 1.06 16 5 O -0.39 -7.43 9.54 -148.98 -1.42 -8.86 16 6 C 0.10 1.63 6.06 71.24 0.43 2.07 16 7 C -0.10 -1.79 5.51 -19.86 -0.11 -1.90 16 8 C -0.11 -1.53 9.70 22.27 0.22 -1.32 16 9 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 10 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 11 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 12 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 13 S 2.61 73.34 5.32 -56.49 -0.30 73.04 16 14 O -0.99 -35.02 17.09 -127.65 -2.18 -37.20 16 15 O -0.98 -32.44 16.76 -127.65 -2.14 -34.58 16 16 C -0.61 -16.00 6.18 71.98 0.44 -15.56 16 17 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 18 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 19 C -0.55 -31.77 9.66 25.60 0.25 -31.52 16 20 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 21 C 0.00 0.00 5.47 84.66 0.46 0.46 16 22 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 23 Si 0.96 43.15 27.47 68.60 1.88 45.04 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 27 H 0.05 0.98 8.05 -2.39 -0.02 0.96 16 28 H 0.07 1.23 7.79 -2.39 -0.02 1.21 16 29 H 0.09 1.24 7.94 -2.38 -0.02 1.22 16 30 H 0.11 1.44 7.61 -2.38 -0.02 1.42 16 31 H 0.11 1.17 7.96 -2.39 -0.02 1.15 16 32 H 0.04 0.82 7.91 -2.38 -0.02 0.80 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.87 8.08 -2.38 -0.02 0.85 16 35 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.03 1.46 7.20 -2.38 -0.02 1.44 16 46 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 47 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -80.64 402.69 0.37 -80.27 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.87 Total: 15.73 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 5.03 Total: -51.56 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.37 Total: -81.87 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -5.74 Total: -80.64 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 16 Polarization: 73.34 SS G_CDS: -0.30 Total: 73.04 kcal Total: -80.64 0.37 -80.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152828310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.289 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds