Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46682 * 2 1 4 4 C 1.52998 * 109.47505 * 240.00043 * 2 1 3 5 5 S 1.81393 * 109.47299 * 179.97438 * 4 2 1 6 6 C 1.81404 * 102.99961 * 179.97438 * 5 4 2 7 7 O 1.42098 * 109.46887 * 63.61500 * 5 4 2 8 8 N 1.46901 * 109.47338 * 119.99685 * 2 1 3 9 9 C 1.46904 * 111.00299 * 275.00228 * 8 2 1 10 10 C 1.52998 * 109.47017 * 179.97438 * 9 8 2 11 11 H 1.08998 * 109.47020 * 60.00213 * 10 9 8 12 12 O 1.42900 * 109.47151 * 299.99920 * 10 9 8 13 13 C 1.53002 * 109.47025 * 180.02562 * 10 9 8 14 14 O 1.42895 * 109.46981 * 185.00144 * 13 10 9 15 15 C 1.35678 * 116.99997 * 180.02562 * 14 13 10 16 16 C 1.39305 * 119.81904 * 180.02562 * 15 14 13 17 17 C 1.36438 * 120.18360 * 179.71525 * 16 15 14 18 18 C 1.40829 * 119.81200 * 0.27972 * 17 16 15 19 19 C 1.41223 * 120.18048 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99992 * 335.14278 * 19 18 17 21 21 C 1.39886 * 120.00282 * 155.13982 * 19 18 17 22 22 N 1.30885 * 119.99755 * 342.15824 * 21 19 18 23 23 Si 1.86800 * 120.00131 * 162.15578 * 21 19 18 24 24 H 1.48502 * 109.47092 * 94.65822 * 23 21 19 25 25 H 1.48501 * 109.47092 * 214.65617 * 23 21 19 26 26 H 1.48497 * 109.47284 * 334.65885 * 23 21 19 27 27 C 1.40828 * 119.64615 * 359.97438 * 18 17 16 28 28 C 1.36442 * 119.80860 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47090 * 299.99857 * 1 2 3 31 31 H 1.08993 * 109.47015 * 59.99962 * 1 2 3 32 32 H 1.09000 * 109.46678 * 300.00229 * 4 2 1 33 33 H 1.09003 * 109.46911 * 59.99427 * 4 2 1 34 34 H 1.09004 * 109.46912 * 60.00166 * 6 5 4 35 35 H 1.08998 * 109.47119 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47109 * 300.00448 * 6 5 4 37 37 H 1.00898 * 110.99463 * 38.95874 * 8 2 1 38 38 H 1.09007 * 109.46523 * 59.99766 * 9 8 2 39 39 H 1.08998 * 109.47110 * 299.99887 * 9 8 2 40 40 H 0.96699 * 114.00658 * 300.00074 * 12 10 9 41 41 H 1.08999 * 109.46877 * 65.00196 * 13 10 9 42 42 H 1.08996 * 109.46840 * 305.00499 * 13 10 9 43 43 H 1.07998 * 119.90702 * 359.97438 * 16 15 14 44 44 H 1.08003 * 120.09720 * 180.29575 * 17 16 15 45 45 H 0.96996 * 120.00147 * 179.97438 * 22 21 19 46 46 H 1.07994 * 120.10143 * 180.02562 * 27 18 17 47 47 H 1.07998 * 119.91122 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 3.8540 -0.7205 -1.2495 6 6 4.2621 -1.6050 -2.7798 7 8 4.3281 -1.4619 -0.1338 8 7 2.0197 -0.6924 1.1995 9 6 2.0825 0.2227 2.3470 10 6 2.5951 -0.5331 3.5745 11 1 3.5904 -0.9271 3.3691 12 8 1.7080 -1.6126 3.8741 13 6 2.6599 0.4198 4.7698 14 8 3.2473 -0.2538 5.8847 15 6 3.3786 0.4557 7.0337 16 6 3.9441 -0.1435 8.1570 17 6 4.0850 0.5649 9.3146 18 6 3.6515 1.9035 9.3734 19 6 3.7942 2.6441 10.5674 20 1 3.8452 2.1327 11.5173 21 6 3.8694 4.0402 10.5198 22 7 4.1578 4.6420 9.3939 23 14 3.5582 5.0455 12.0632 24 1 4.8519 5.3451 12.7280 25 1 2.8832 6.3168 11.6981 26 1 2.6923 4.2737 12.9904 27 6 3.0760 2.5001 8.2349 28 6 2.9433 1.7781 7.0848 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.8428 -1.0697 -3.6318 35 1 5.3452 -1.6657 -2.8866 36 1 3.8435 -2.6107 -2.7409 37 1 1.4496 -1.4979 1.4100 38 1 1.0870 0.6163 2.5525 39 1 2.7588 1.0463 2.1183 40 1 0.8021 -1.3351 4.0676 41 1 1.6526 0.7442 5.0308 42 1 3.2653 1.2881 4.5097 43 1 4.2756 -1.1702 8.1102 44 1 4.5280 0.1005 10.1832 45 1 4.2096 5.6100 9.3607 46 1 2.7415 3.5262 8.2717 47 1 2.5026 2.2341 6.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575253366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = -106.682997 kcal Electronic energy + Delta-G solvation = -26761.634405 eV Core-core repulsion = 22843.247139 eV Total energy + Delta-G solvation = -3918.387266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.12754 -38.16247 -36.75333 -35.86157 -35.56905 -33.31305 -32.15625 -29.87627 -29.56267 -29.19625 -28.60273 -27.65726 -25.23955 -24.25392 -21.91305 -21.36976 -20.84037 -20.29621 -17.58967 -17.33847 -17.12981 -16.54981 -16.32155 -15.90303 -15.64976 -15.19782 -15.05113 -14.76621 -14.51256 -14.08419 -13.92078 -13.87314 -13.59422 -13.36054 -13.21569 -12.87623 -12.81270 -12.64541 -12.38795 -12.13187 -11.97422 -11.97022 -11.76530 -11.71109 -11.41181 -11.37831 -11.10155 -11.00926 -10.77270 -10.53820 -10.17431 -10.00533 -9.84068 -9.76846 -9.33781 -8.98783 -8.59063 -8.34058 -7.62927 -6.97986 -6.70985 -4.22824 1.40678 2.52918 2.78709 2.98868 3.08734 3.13349 3.23300 3.54546 3.77267 3.96482 4.24240 4.42803 4.48673 4.63824 4.65915 4.85429 4.87674 4.95538 5.01146 5.07247 5.07794 5.21372 5.28944 5.39839 5.41052 5.52914 5.60869 5.63457 5.68874 5.71444 5.72446 6.12828 6.19577 6.32153 6.71794 6.77139 6.91934 7.08996 7.15702 7.30348 7.43743 7.58609 7.69954 7.92980 8.02470 8.18254 8.47885 8.67836 8.92338 9.01946 10.23942 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.001831 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.881091 B =15284.873255 C =15415.855136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H 0.088 0.912 4 C -0.443 4.443 5 S 1.256 4.744 6 C -0.506 4.506 7 O -0.812 6.812 8 N -0.673 5.673 9 C 0.034 3.966 10 C 0.112 3.888 11 H 0.117 0.883 12 O -0.550 6.550 13 C 0.040 3.960 14 O -0.318 6.318 15 C -0.008 4.008 16 C -0.113 4.113 17 C -0.195 4.195 18 C 0.086 3.914 19 C -0.463 4.463 20 H 0.077 0.923 21 C 0.074 3.926 22 N -0.801 5.801 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.134 4.134 28 C -0.175 4.175 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.350 0.650 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.366 0.634 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.279 0.721 46 H 0.120 0.880 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -2.484 -24.850 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.010 4.010 3 H 0.107 0.893 4 C -0.580 4.580 5 S 1.450 4.550 6 C -0.662 4.662 7 O -0.807 6.807 8 N -0.306 5.306 9 C -0.095 4.095 10 C 0.053 3.947 11 H 0.135 0.865 12 O -0.353 6.353 13 C -0.037 4.037 14 O -0.233 6.233 15 C -0.051 4.051 16 C -0.132 4.132 17 C -0.214 4.214 18 C 0.084 3.916 19 C -0.493 4.493 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.428 5.428 23 Si 0.731 3.269 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.153 4.153 28 C -0.194 4.194 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.170 0.830 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.212 0.788 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.089 0.911 46 H 0.138 0.862 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.359 -2.371 -24.573 25.069 hybrid contribution -2.521 -0.780 0.698 2.729 sum -6.880 -3.151 -23.875 25.046 Atomic orbital electron populations 1.22489 0.96671 1.02246 1.02398 1.21144 0.93200 0.97649 0.89055 0.89345 1.27789 1.22386 1.05476 1.02335 1.70653 0.86080 1.14107 0.84115 1.27854 1.08206 1.10783 1.19320 1.93235 1.72025 1.72965 1.42471 1.60490 1.57664 1.09376 1.03050 1.22531 1.00006 0.95846 0.91148 1.21981 0.95611 0.87245 0.89894 0.86533 1.86674 1.22919 1.33889 1.91858 1.23096 0.97879 0.95583 0.87135 1.85880 1.78914 1.39914 1.18631 1.18617 1.08863 0.91536 0.86094 1.19632 1.03163 0.98620 0.91778 1.20608 1.07760 0.96510 0.96556 1.17598 0.89597 0.91142 0.93289 1.19458 1.44854 0.90916 0.94091 0.90526 1.25871 0.92299 0.98600 0.97418 1.69845 1.34554 1.11020 1.27334 0.86340 0.79390 0.79101 0.82109 1.19653 1.20165 1.18511 1.20921 1.01687 0.99984 0.92733 1.20594 1.06173 0.93705 0.98942 0.92509 0.92386 0.91792 0.89837 0.86812 0.87641 0.88089 0.90653 0.83003 0.94723 0.89643 0.78789 0.93165 0.92221 0.88463 0.88201 0.91067 0.86180 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.16 37.16 0.34 -0.75 16 2 C 0.10 0.70 2.64 -67.71 -0.18 0.52 16 3 H 0.09 0.48 7.80 -51.93 -0.40 0.08 16 4 C -0.44 -2.53 5.62 37.16 0.21 -2.32 16 5 S 1.26 8.22 13.69 -107.50 -1.47 6.75 16 6 C -0.51 -2.79 10.74 101.05 1.09 -1.71 16 7 O -0.81 -11.55 17.01 -35.23 -0.60 -12.15 16 8 N -0.67 -6.88 4.89 -106.72 -0.52 -7.40 16 9 C 0.03 0.36 5.19 -3.82 -0.02 0.34 16 10 C 0.11 1.57 3.52 -26.73 -0.09 1.48 16 11 H 0.12 1.93 8.14 -51.93 -0.42 1.51 16 12 O -0.55 -7.92 12.64 -40.11 -0.51 -8.43 16 13 C 0.04 0.66 4.36 37.16 0.16 0.82 16 14 O -0.32 -6.85 10.09 -23.62 -0.24 -7.09 16 15 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 16 C -0.11 -2.75 9.92 -39.83 -0.40 -3.14 16 17 C -0.19 -4.94 9.74 -39.25 -0.38 -5.32 16 18 C 0.09 2.34 5.57 -106.80 -0.60 1.74 16 19 C -0.46 -12.44 9.04 -37.83 -0.34 -12.78 16 20 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 21 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 22 N -0.80 -20.87 10.97 55.54 0.61 -20.26 16 23 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 28 C -0.18 -4.18 8.97 -39.83 -0.36 -4.53 16 29 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 7.45 -51.93 -0.39 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.11 0.29 8.14 -51.92 -0.42 -0.13 16 34 H 0.10 0.29 8.14 -51.92 -0.42 -0.14 16 35 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.35 3.81 7.86 -39.29 -0.31 3.50 16 38 H 0.03 0.31 7.44 -51.92 -0.39 -0.08 16 39 H 0.09 0.82 8.06 -51.93 -0.42 0.41 16 40 H 0.37 3.90 9.05 45.56 0.41 4.31 16 41 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16 42 H 0.06 0.95 7.66 -51.93 -0.40 0.55 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 44 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 45 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 46 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 47 H 0.09 1.94 6.27 -52.49 -0.33 1.61 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -35.91 397.99 -9.73 -45.65 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.72 Total: 11.31 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -1.26 Total: -28.16 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.09 Total: -27.66 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.34 Total: -27.66 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 8.22 SS G_CDS: -1.47 Total: 6.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.91 -9.73 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575253366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.034 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds