Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46682 * 2 1 4 4 C 1.52998 * 109.47505 * 240.00043 * 2 1 3 5 5 S 1.81393 * 109.47299 * 179.97438 * 4 2 1 6 6 C 1.81404 * 102.99961 * 179.97438 * 5 4 2 7 7 O 1.42098 * 109.46887 * 63.61500 * 5 4 2 8 8 N 1.46901 * 109.47338 * 119.99685 * 2 1 3 9 9 C 1.46904 * 111.00299 * 275.00228 * 8 2 1 10 10 C 1.52998 * 109.47017 * 179.97438 * 9 8 2 11 11 H 1.08998 * 109.47020 * 60.00213 * 10 9 8 12 12 O 1.42900 * 109.47151 * 299.99920 * 10 9 8 13 13 C 1.53002 * 109.47025 * 180.02562 * 10 9 8 14 14 O 1.42895 * 109.46981 * 185.00144 * 13 10 9 15 15 C 1.35678 * 116.99997 * 180.02562 * 14 13 10 16 16 C 1.39305 * 119.81904 * 180.02562 * 15 14 13 17 17 C 1.36438 * 120.18360 * 179.71525 * 16 15 14 18 18 C 1.40829 * 119.81200 * 0.27972 * 17 16 15 19 19 C 1.41223 * 120.18048 * 180.02562 * 18 17 16 20 20 H 1.08009 * 119.99992 * 335.14278 * 19 18 17 21 21 C 1.39886 * 120.00282 * 155.13982 * 19 18 17 22 22 N 1.30885 * 119.99755 * 342.15824 * 21 19 18 23 23 Si 1.86800 * 120.00131 * 162.15578 * 21 19 18 24 24 H 1.48502 * 109.47092 * 94.65822 * 23 21 19 25 25 H 1.48501 * 109.47092 * 214.65617 * 23 21 19 26 26 H 1.48497 * 109.47284 * 334.65885 * 23 21 19 27 27 C 1.40828 * 119.64615 * 359.97438 * 18 17 16 28 28 C 1.36442 * 119.80860 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.46859 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47090 * 299.99857 * 1 2 3 31 31 H 1.08993 * 109.47015 * 59.99962 * 1 2 3 32 32 H 1.09000 * 109.46678 * 300.00229 * 4 2 1 33 33 H 1.09003 * 109.46911 * 59.99427 * 4 2 1 34 34 H 1.09004 * 109.46912 * 60.00166 * 6 5 4 35 35 H 1.08998 * 109.47119 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47109 * 300.00448 * 6 5 4 37 37 H 1.00898 * 110.99463 * 38.95874 * 8 2 1 38 38 H 1.09007 * 109.46523 * 59.99766 * 9 8 2 39 39 H 1.08998 * 109.47110 * 299.99887 * 9 8 2 40 40 H 0.96699 * 114.00658 * 300.00074 * 12 10 9 41 41 H 1.08999 * 109.46877 * 65.00196 * 13 10 9 42 42 H 1.08996 * 109.46840 * 305.00499 * 13 10 9 43 43 H 1.07998 * 119.90702 * 359.97438 * 16 15 14 44 44 H 1.08003 * 120.09720 * 180.29575 * 17 16 15 45 45 H 0.96996 * 120.00147 * 179.97438 * 22 21 19 46 46 H 1.07994 * 120.10143 * 180.02562 * 27 18 17 47 47 H 1.07998 * 119.91122 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 16 3.8540 -0.7205 -1.2495 6 6 4.2621 -1.6050 -2.7798 7 8 4.3281 -1.4619 -0.1338 8 7 2.0197 -0.6924 1.1995 9 6 2.0825 0.2227 2.3470 10 6 2.5951 -0.5331 3.5745 11 1 3.5904 -0.9271 3.3691 12 8 1.7080 -1.6126 3.8741 13 6 2.6599 0.4198 4.7698 14 8 3.2473 -0.2538 5.8847 15 6 3.3786 0.4557 7.0337 16 6 3.9441 -0.1435 8.1570 17 6 4.0850 0.5649 9.3146 18 6 3.6515 1.9035 9.3734 19 6 3.7942 2.6441 10.5674 20 1 3.8452 2.1327 11.5173 21 6 3.8694 4.0402 10.5198 22 7 4.1578 4.6420 9.3939 23 14 3.5582 5.0455 12.0632 24 1 4.8519 5.3451 12.7280 25 1 2.8832 6.3168 11.6981 26 1 2.6923 4.2737 12.9904 27 6 3.0760 2.5001 8.2349 28 6 2.9433 1.7781 7.0848 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.8428 -1.0697 -3.6318 35 1 5.3452 -1.6657 -2.8866 36 1 3.8435 -2.6107 -2.7409 37 1 1.4496 -1.4979 1.4100 38 1 1.0870 0.6163 2.5525 39 1 2.7588 1.0463 2.1183 40 1 0.8021 -1.3351 4.0676 41 1 1.6526 0.7442 5.0308 42 1 3.2653 1.2881 4.5097 43 1 4.2756 -1.1702 8.1102 44 1 4.5280 0.1005 10.1832 45 1 4.2096 5.6100 9.3607 46 1 2.7415 3.5262 8.2717 47 1 2.5026 2.2341 6.2106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575253366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = -134.254042 kcal Electronic energy + Delta-G solvation = -26762.829976 eV Core-core repulsion = 22843.247139 eV Total energy + Delta-G solvation = -3919.582836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68878 -39.34138 -38.10308 -37.13976 -36.38085 -35.20913 -33.01785 -31.57921 -31.29662 -30.14942 -29.61186 -28.12536 -26.87778 -25.64472 -23.31811 -22.57056 -22.18770 -21.73342 -19.27855 -18.73400 -18.14686 -17.85963 -17.49024 -16.97018 -16.59515 -16.40997 -15.96127 -15.77001 -15.73196 -15.60355 -15.15820 -14.85216 -14.76593 -14.34888 -14.23377 -14.13888 -13.78710 -13.71277 -13.46239 -13.39746 -13.27226 -13.22085 -12.89940 -12.74859 -12.71333 -12.52431 -12.35637 -12.30968 -11.94911 -11.91254 -11.70448 -11.59645 -11.24377 -11.01345 -10.86557 -10.84939 -9.58252 -9.27985 -8.94956 -8.91804 -8.60343 -6.22800 0.89052 0.92899 1.03049 1.40108 1.49680 1.56143 2.04259 2.23374 2.38541 2.71834 3.16200 3.28758 3.44712 3.69354 3.89760 3.94774 3.99802 4.01514 4.22073 4.28227 4.31468 4.36011 4.37286 4.45364 4.45860 4.55284 4.64080 4.68676 4.85341 4.86499 4.93205 4.98776 5.04256 5.14767 5.16508 5.20027 5.26404 5.36378 5.51443 5.65006 5.95946 6.05091 6.08361 6.23011 6.38300 6.55590 6.74999 6.80125 6.94722 7.09560 8.37018 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.001831 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.881091 B =15284.873255 C =15415.855136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.109 0.891 4 C -0.435 4.435 5 S 1.288 4.712 6 C -0.500 4.500 7 O -0.898 6.898 8 N -0.692 5.692 9 C 0.045 3.955 10 C 0.122 3.878 11 H 0.084 0.916 12 O -0.567 6.567 13 C 0.034 3.966 14 O -0.333 6.333 15 C -0.003 4.003 16 C -0.126 4.126 17 C -0.205 4.205 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.075 0.925 21 C 0.034 3.966 22 N -0.830 5.830 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.265 1.265 26 H -0.260 1.260 27 C -0.152 4.152 28 C -0.174 4.174 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.342 0.658 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.383 0.617 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.288 0.712 46 H 0.110 0.890 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -1.005 -26.823 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 H 0.127 0.873 4 C -0.573 4.573 5 S 1.487 4.513 6 C -0.657 4.657 7 O -0.894 6.894 8 N -0.324 5.324 9 C -0.085 4.085 10 C 0.063 3.937 11 H 0.102 0.898 12 O -0.374 6.374 13 C -0.042 4.042 14 O -0.249 6.249 15 C -0.046 4.046 16 C -0.144 4.144 17 C -0.225 4.225 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.093 0.907 21 C -0.180 4.180 22 N -0.457 5.457 23 Si 0.803 3.197 24 H -0.189 1.189 25 H -0.189 1.189 26 H -0.184 1.184 27 C -0.172 4.172 28 C -0.192 4.192 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.174 0.826 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.161 0.839 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.231 0.769 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.781 -0.893 -26.563 27.199 hybrid contribution -2.126 -1.336 1.065 2.728 sum -7.908 -2.229 -25.497 26.788 Atomic orbital electron populations 1.22434 0.95735 1.01902 1.03217 1.21361 0.93980 0.98459 0.87914 0.87335 1.27739 1.20625 1.05123 1.03780 1.69590 0.86152 1.12976 0.82594 1.27787 1.08467 1.10062 1.19378 1.93117 1.74783 1.74918 1.46551 1.60499 1.58414 1.09580 1.03946 1.22399 1.01063 0.95391 0.89616 1.21820 0.94553 0.86849 0.90509 0.89778 1.86629 1.24172 1.34535 1.92024 1.23451 0.98433 0.96278 0.86081 1.85878 1.79323 1.40722 1.19000 1.18741 1.07513 0.91542 0.86847 1.19896 1.03244 0.99453 0.91845 1.20783 1.07961 0.96302 0.97440 1.17973 0.90610 0.92155 0.94125 1.19704 1.46889 0.92264 0.94031 0.90698 1.26730 0.91268 0.99108 1.00906 1.69886 1.34593 1.11861 1.29371 0.85195 0.79410 0.77439 0.77651 1.18885 1.18912 1.18406 1.20918 1.02806 0.99860 0.93622 1.20812 1.05610 0.93648 0.99162 0.93447 0.92661 0.89855 0.91410 0.82569 0.83909 0.88135 0.92297 0.83868 0.92584 0.88745 0.76863 0.91447 0.91525 0.86881 0.87349 0.90162 0.87246 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.16 71.98 0.66 -0.99 16 2 C 0.09 1.07 2.64 44.91 0.12 1.19 16 3 H 0.11 0.82 7.80 -2.38 -0.02 0.80 16 4 C -0.43 -3.89 5.62 71.98 0.40 -3.49 16 5 S 1.29 15.59 13.69 -56.49 -0.77 14.82 16 6 C -0.50 -4.60 10.74 113.37 1.22 -3.38 16 7 O -0.90 -26.49 17.01 -148.98 -2.53 -29.02 16 8 N -0.69 -13.55 4.89 -491.55 -2.40 -15.95 16 9 C 0.04 0.86 5.19 86.30 0.45 1.31 16 10 C 0.12 3.40 3.52 30.59 0.11 3.50 16 11 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 12 O -0.57 -16.16 12.64 -144.31 -1.82 -17.99 16 13 C 0.03 1.07 4.36 71.98 0.31 1.38 16 14 O -0.33 -14.25 10.09 -85.29 -0.86 -15.11 16 15 C 0.00 -0.12 6.71 22.79 0.15 0.03 16 16 C -0.13 -6.16 9.92 22.11 0.22 -5.94 16 17 C -0.21 -10.64 9.74 22.48 0.22 -10.42 16 18 C 0.05 2.98 5.57 -21.28 -0.12 2.86 16 19 C -0.50 -27.44 9.04 23.40 0.21 -27.23 16 20 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 21 C 0.03 1.72 5.13 85.23 0.44 2.16 16 22 N -0.83 -43.61 10.97 21.82 0.24 -43.38 16 23 Si 0.98 38.46 29.60 68.60 2.03 40.49 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 25 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 27 C -0.15 -8.15 8.64 22.48 0.19 -7.95 16 28 C -0.17 -8.23 8.97 22.11 0.20 -8.03 16 29 H 0.05 0.54 8.13 -2.39 -0.02 0.52 16 30 H 0.05 0.57 7.45 -2.39 -0.02 0.55 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.34 7.37 7.86 -89.70 -0.71 6.67 16 38 H 0.06 0.85 7.44 -2.38 -0.02 0.83 16 39 H 0.09 1.65 8.06 -2.39 -0.02 1.63 16 40 H 0.38 7.73 9.05 -74.06 -0.67 7.06 16 41 H 0.07 1.91 7.63 -2.39 -0.02 1.90 16 42 H 0.07 2.02 7.66 -2.39 -0.02 2.01 16 43 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 44 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 45 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 46 H 0.11 5.99 6.18 -2.91 -0.02 5.97 16 47 H 0.12 4.90 6.27 -2.91 -0.02 4.88 16 Total: -1.00 -81.04 397.99 -1.73 -82.77 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -0.40 Total: 38.36 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 4.78 Total: -54.99 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -2.16 Total: -59.33 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -5.22 Total: -62.12 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: 15.59 SS G_CDS: -0.77 Total: 14.82 kcal Total: -81.04 -1.73 -82.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575253366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.482 kcal (2) G-P(sol) polarization free energy of solvation -81.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds