Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47310 * 2 1 4 4 C 1.42900 * 113.99911 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47139 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47466 * 59.99634 * 5 4 3 7 7 C 1.53002 * 109.47108 * 299.99513 * 5 4 3 8 8 C 1.53008 * 109.47385 * 179.97438 * 5 4 3 9 9 N 1.46500 * 109.47488 * 179.97438 * 8 5 4 10 10 S 1.65599 * 120.00214 * 164.99885 * 9 8 5 11 11 O 1.42099 * 106.39938 * 311.46446 * 10 9 8 12 12 O 1.42092 * 106.40136 * 178.53974 * 10 9 8 13 13 C 1.76199 * 107.21588 * 64.99779 * 10 9 8 14 14 C 1.38649 * 119.87924 * 270.25539 * 13 10 9 15 15 C 1.38617 * 120.50384 * 180.30415 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87027 * 90.00133 * 13 10 9 27 27 H 1.09008 * 109.46798 * 60.00396 * 1 2 3 28 28 H 1.09002 * 109.47829 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47288 * 300.00825 * 1 2 3 30 30 H 1.08997 * 109.47123 * 239.98931 * 2 1 3 31 31 H 1.09008 * 109.46798 * 119.99604 * 2 1 3 32 32 H 1.09007 * 109.47290 * 59.99286 * 4 3 2 33 33 H 1.09007 * 109.47032 * 299.99649 * 4 3 2 34 34 H 1.08997 * 109.47691 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47032 * 300.00380 * 6 5 4 36 36 H 1.09007 * 109.46761 * 60.00045 * 6 5 4 37 37 H 1.08994 * 109.47389 * 300.00294 * 7 5 4 38 38 H 1.09001 * 109.46701 * 60.00684 * 7 5 4 39 39 H 1.09006 * 109.47096 * 179.97438 * 7 5 4 40 40 H 1.08994 * 109.46890 * 59.99842 * 8 5 4 41 41 H 1.09001 * 109.46706 * 300.00309 * 8 5 4 42 42 H 0.96998 * 119.99788 * 345.00004 * 9 8 5 43 43 H 1.08005 * 119.75337 * 0.03997 * 14 13 10 44 44 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 45 45 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 46 46 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.13007 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9382 -0.0001 6 6 3.2595 3.6178 1.2484 7 6 3.2608 3.6162 -1.2501 8 6 5.3507 3.0590 0.0012 9 7 5.7286 4.4744 -0.0001 10 16 7.2802 4.9176 0.3720 11 8 7.6192 4.2268 1.5666 12 8 7.3334 6.3323 0.2504 13 6 8.3246 4.2700 -0.8907 14 6 8.8672 3.0013 -0.7550 15 6 9.6955 2.4815 -1.7374 16 6 9.9791 3.2171 -2.8657 17 6 9.4294 4.5034 -3.0168 18 6 9.7142 5.2686 -4.1712 19 1 9.6454 6.3457 -4.1357 20 6 10.0852 4.6300 -5.3599 21 7 9.8390 3.3553 -5.5221 22 14 10.9320 5.5975 -6.7151 23 1 12.2047 6.1623 -6.1988 24 1 11.2180 4.6976 -7.8612 25 1 10.0458 6.7019 -7.1626 26 6 8.5944 5.0232 -2.0102 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8341 0.9762 -0.8891 33 1 3.8332 0.9766 0.8909 34 1 3.5410 4.6708 1.2481 35 1 2.1730 3.5317 1.2479 36 1 3.6619 3.1347 2.1389 37 1 3.6639 3.1321 -2.1395 38 1 2.1742 3.5302 -1.2505 39 1 3.5415 4.6695 -1.2504 40 1 5.7542 2.5748 -0.8881 41 1 5.7526 2.5760 0.8918 42 1 5.0699 5.1520 -0.2189 43 1 8.6462 2.4151 0.1248 44 1 10.1163 1.4940 -1.6193 45 1 10.6214 2.8087 -3.6319 46 1 10.0959 2.9128 -6.3462 47 1 8.1678 6.0097 -2.1156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588906469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = -124.080417 kcal Electronic energy + Delta-G solvation = -28009.028000 eV Core-core repulsion = 24089.886325 eV Total energy + Delta-G solvation = -3919.141675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.07438 -37.64831 -37.00498 -36.57978 -35.29137 -33.86153 -32.99014 -31.08006 -30.08828 -29.79588 -27.25770 -26.85415 -25.50708 -25.04696 -22.95445 -21.89871 -21.00259 -19.29036 -19.07410 -17.99630 -17.09392 -16.83576 -16.29848 -15.94034 -15.68311 -15.21310 -14.90572 -14.84551 -14.56915 -14.39462 -13.66657 -13.44858 -13.41700 -13.32503 -13.19633 -12.66428 -12.58640 -12.35328 -11.93736 -11.84997 -11.70182 -11.60470 -11.55835 -11.53282 -11.49757 -11.40431 -11.36530 -11.01966 -10.93197 -10.87797 -10.74724 -10.64307 -10.62018 -9.80440 -9.74056 -9.66444 -9.35695 -9.12668 -8.04981 -7.71832 -6.94256 -4.54832 1.03917 2.18962 2.62987 2.98491 3.00748 3.07578 3.36565 3.69965 3.81642 4.24717 4.42439 4.66252 4.67757 4.74153 4.80503 4.98082 5.05513 5.12815 5.23654 5.36583 5.38412 5.40928 5.44168 5.56248 5.64731 5.72057 5.82251 5.83035 5.84478 5.93889 6.02537 6.03397 6.16137 6.18234 6.30380 6.32998 6.64630 6.75099 6.83968 7.01791 7.03380 7.19297 7.24750 7.37549 7.71519 7.79747 7.93209 8.38966 8.65625 8.70588 10.01087 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.003003 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.802729 B = 9320.437343 C =10472.288803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.073 3.927 5 C -0.066 4.066 6 C -0.138 4.138 7 C -0.139 4.139 8 C 0.130 3.870 9 N -1.117 6.117 10 S 2.690 3.310 11 O -0.975 6.975 12 O -0.973 6.973 13 C -0.631 4.631 14 C -0.150 4.150 15 C -0.120 4.120 16 C -0.119 4.119 17 C 0.091 3.909 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.123 4.123 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.413 0.587 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.284 0.716 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 -6.117 6.385 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.302 6.302 4 C -0.005 4.005 5 C -0.068 4.068 6 C -0.195 4.195 7 C -0.197 4.197 8 C 0.003 3.997 9 N -0.876 5.876 10 S 2.786 3.214 11 O -0.965 6.965 12 O -0.963 6.963 13 C -0.723 4.723 14 C -0.171 4.171 15 C -0.140 4.140 16 C -0.139 4.139 17 C 0.088 3.912 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.145 4.145 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.248 0.752 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.142 0.858 46 H 0.095 0.905 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.167 -5.791 7.008 16.001 hybrid contribution 0.507 -0.127 -1.564 1.649 sum -12.659 -5.919 5.444 14.998 Atomic orbital electron populations 1.21732 0.93899 1.02079 1.03056 1.22436 0.95436 0.84088 1.00063 1.87854 1.20968 1.25971 1.95425 1.22454 0.81346 0.96042 1.00629 1.20704 0.94172 0.94270 0.97648 1.21799 1.01266 1.00400 0.96064 1.21812 1.01413 1.00256 0.96200 1.21181 0.94321 0.81518 1.02661 1.55539 1.29356 1.13858 1.88873 1.01599 0.72365 0.73028 0.74390 1.93507 1.82954 1.75539 1.44549 1.93537 1.86058 1.29242 1.87510 1.29744 1.19816 1.06346 1.16390 1.20073 1.03482 0.94117 0.99448 1.20804 0.99550 0.98626 0.95017 1.21635 0.99949 0.95947 0.96360 1.17683 0.89216 0.92346 0.91957 1.19593 1.40399 0.95064 0.93898 0.89937 1.25933 0.93396 0.95052 0.99892 1.69776 1.34412 1.11025 1.26710 0.86298 0.80693 0.80217 0.79203 1.18664 1.20251 1.18815 1.20783 1.00577 0.98891 0.94212 0.91884 0.91286 0.91950 0.93435 0.93529 0.92756 0.92934 0.92393 0.91763 0.92590 0.92246 0.91678 0.92435 0.91006 0.90244 0.75167 0.87648 0.88432 0.85767 0.90537 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.47 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.03 8.99 -35.23 -0.32 -4.34 16 4 C 0.07 0.74 4.80 37.15 0.18 0.92 16 5 C -0.07 -0.73 0.62 -154.51 -0.10 -0.83 16 6 C -0.14 -1.46 8.16 37.16 0.30 -1.16 16 7 C -0.14 -1.53 8.16 37.16 0.30 -1.23 16 8 C 0.13 1.67 5.11 -4.04 -0.02 1.65 16 9 N -1.12 -15.99 5.33 -10.61 -0.06 -16.04 16 10 S 2.69 49.80 5.73 -107.50 -0.62 49.18 16 11 O -0.98 -19.56 16.74 -57.17 -0.96 -20.51 16 12 O -0.97 -20.31 17.26 -57.17 -0.99 -21.30 16 13 C -0.63 -13.57 5.94 -39.66 -0.24 -13.81 16 14 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 15 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 16 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 17 C 0.09 2.35 5.58 -106.82 -0.60 1.75 16 18 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 19 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 20 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.41 10.95 55.55 0.61 -18.80 16 22 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 C -0.12 -2.94 9.26 -38.87 -0.36 -3.30 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.06 0.60 7.20 -51.93 -0.37 0.23 16 35 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 36 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 39 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 42 H 0.41 5.12 6.47 -34.47 -0.22 4.90 16 43 H 0.11 2.00 7.61 -52.48 -0.40 1.60 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 46 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 47 H 0.11 2.55 7.60 -52.49 -0.40 2.15 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -30.13 393.38 -10.32 -40.45 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.46 Total: 8.71 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: -1.43 Total: -36.20 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.55 Total: -34.85 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -2.26 Total: -46.16 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 49.80 SS G_CDS: -0.62 Total: 49.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.13 -10.32 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588906469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.627 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds