Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46501 * 109.47289 * 2 1 4 4 C 1.46762 * 124.35000 * 89.99641 * 3 2 1 5 5 C 1.54483 * 105.47383 * 196.99771 * 4 3 2 6 6 H 1.08998 * 110.96597 * 92.74417 * 5 4 3 7 7 N 1.46501 * 110.96596 * 216.46570 * 5 4 3 8 8 C 1.34777 * 119.99420 * 205.52209 * 7 5 4 9 9 O 1.21662 * 120.00220 * 5.10040 * 8 7 5 10 10 C 1.46898 * 119.99769 * 185.10040 * 8 7 5 11 11 C 1.36121 * 125.43461 * 186.36487 * 10 8 7 12 12 C 1.41702 * 107.74256 * 179.97438 * 11 10 8 13 13 C 1.40026 * 133.34334 * 180.02562 * 12 11 10 14 14 C 1.36571 * 119.82862 * 179.97438 * 13 12 11 15 15 C 1.38858 * 120.60133 * 0.02562 * 14 13 12 16 16 C 1.37846 * 120.63094 * 0.25417 * 15 14 13 17 17 C 1.39084 * 119.81629 * 359.44920 * 16 15 14 18 18 N 1.37832 * 133.16785 * 180.17667 * 17 16 15 19 19 C 1.36888 * 125.62223 * 0.33727 * 18 17 16 20 20 H 1.08005 * 120.00260 * 222.02548 * 19 18 17 21 21 C 1.39013 * 120.00166 * 42.01544 * 19 18 17 22 22 N 1.31349 * 119.99703 * 11.26548 * 21 19 18 23 23 Si 1.86795 * 120.00352 * 191.25732 * 21 19 18 24 24 H 1.48505 * 109.46711 * 90.00213 * 23 21 19 25 25 H 1.48495 * 109.47598 * 210.00130 * 23 21 19 26 26 H 1.48497 * 109.47272 * 330.00806 * 23 21 19 27 27 C 1.54624 * 101.76327 * 334.58518 * 5 4 3 28 28 C 1.34421 * 124.34750 * 269.97985 * 3 2 1 29 29 O 1.21279 * 124.94244 * 359.60883 * 28 3 2 30 30 H 1.09007 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47107 * 299.99369 * 1 2 3 32 32 H 1.08994 * 109.47347 * 60.00247 * 1 2 3 33 33 H 1.09005 * 109.47615 * 240.00170 * 2 1 3 34 34 H 1.08998 * 109.47364 * 120.00257 * 2 1 3 35 35 H 1.09008 * 110.24221 * 77.99670 * 4 3 2 36 36 H 1.09001 * 110.24754 * 316.00155 * 4 3 2 37 37 H 0.96998 * 120.00475 * 25.52605 * 7 5 4 38 38 H 1.07996 * 126.12852 * 0.02562 * 11 10 8 39 39 H 1.07997 * 120.08123 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.70120 * 180.02562 * 14 13 12 41 41 H 1.07998 * 119.68183 * 179.97438 * 15 14 13 42 42 H 1.08004 * 120.08982 * 179.69926 * 16 15 14 43 43 H 0.97007 * 120.00048 * 184.86767 * 22 21 19 44 44 H 1.09003 * 110.48077 * 143.47436 * 27 5 4 45 45 H 1.09002 * 110.48909 * 266.11325 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 2.3534 3.6346 0.7486 6 1 1.3788 4.1131 0.8451 7 7 3.3749 4.3770 1.4911 8 6 3.2644 5.7123 1.6374 9 8 2.2715 6.2883 1.2343 10 6 4.3428 6.4721 2.2837 11 6 4.2967 7.7956 2.5984 12 6 5.5303 8.1383 3.2055 13 6 6.0470 9.3315 3.7253 14 6 7.3032 9.3514 4.2608 15 6 8.0755 8.1979 4.2949 16 6 7.5908 7.0128 3.7842 17 6 6.3120 6.9663 3.2393 18 7 5.5661 5.9572 2.6691 19 6 5.9701 4.6588 2.5111 20 1 5.7572 4.1352 1.5908 21 6 6.6547 4.0144 3.5350 22 7 6.7221 4.5628 4.7267 23 14 7.4786 2.3685 3.2164 24 1 8.8741 2.5934 2.7611 25 1 7.4890 1.5695 4.4681 26 1 6.7277 1.6341 2.1666 27 6 2.7511 3.4818 -0.7378 28 6 2.2715 2.0961 -1.1098 29 8 2.1353 1.6894 -2.2442 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.2498 1.8636 1.6431 36 1 1.4930 2.0268 1.9382 37 1 4.1308 3.9077 1.8774 38 1 3.4680 8.4644 2.4185 39 1 5.4537 10.2335 3.7027 40 1 7.6995 10.2727 4.6615 41 1 9.0671 8.2307 4.7215 42 1 8.2009 6.1220 3.8108 43 1 7.2581 4.1491 5.4214 44 1 2.2501 4.2350 -1.3460 45 1 3.8326 3.5550 -0.8528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590776408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = -21.082090 kcal Electronic energy + Delta-G solvation = -29741.307071 eV Core-core repulsion = 25723.480538 eV Total energy + Delta-G solvation = -4017.826532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27325 -41.63705 -40.07454 -37.77754 -37.57613 -36.01279 -35.33122 -33.49298 -32.42667 -30.80206 -30.24900 -29.55395 -28.44369 -26.80694 -25.12393 -24.18057 -22.78220 -22.61361 -21.69351 -21.12764 -20.42430 -19.85455 -18.41653 -17.87213 -17.62146 -17.32656 -16.84301 -16.46962 -16.26594 -16.05594 -16.04054 -15.23242 -15.13183 -14.91120 -14.73401 -14.71951 -14.60800 -14.43635 -14.31012 -14.13543 -13.59021 -13.43063 -13.32181 -13.05242 -12.97718 -12.87968 -12.82222 -12.38549 -12.31329 -12.14647 -12.03479 -11.90037 -11.45129 -11.28417 -11.05827 -10.96642 -10.39123 -10.13103 -9.85612 -8.96244 -8.60859 -8.27548 -6.49173 0.12007 1.12228 1.36654 1.40077 1.41910 1.44798 1.52524 1.80504 2.09556 2.20082 2.49256 2.79147 2.92813 3.26185 3.38099 3.42679 3.72631 3.91942 4.05493 4.11061 4.22192 4.25343 4.44539 4.45364 4.47249 4.52194 4.56921 4.71718 4.76424 4.78966 4.81119 4.87087 4.92872 5.02857 5.08391 5.21991 5.26119 5.38051 5.42896 5.47077 5.49432 5.74848 5.91842 5.94269 5.98266 6.21413 6.25688 6.50897 6.58289 6.92897 6.99775 7.22742 7.50219 8.39658 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.003634 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.509817 B = 7703.704539 C = 9152.910778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.610 5.610 4 C 0.102 3.898 5 C 0.135 3.865 6 H 0.109 0.891 7 N -0.709 5.709 8 C 0.602 3.398 9 O -0.573 6.573 10 C -0.045 4.045 11 C -0.176 4.176 12 C -0.156 4.156 13 C -0.092 4.092 14 C -0.155 4.155 15 C -0.137 4.137 16 C -0.084 4.084 17 C 0.075 3.925 18 N -0.270 5.270 19 C -0.392 4.392 20 H 0.119 0.881 21 C 0.028 3.972 22 N -0.846 5.846 23 Si 0.985 3.015 24 H -0.272 1.272 25 H -0.274 1.274 26 H -0.243 1.243 27 C -0.166 4.166 28 C 0.522 3.478 29 O -0.573 6.573 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.419 0.581 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.101 0.899 43 H 0.286 0.714 44 H 0.103 0.897 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -6.945 -0.534 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.343 5.343 4 C -0.021 4.021 5 C 0.029 3.971 6 H 0.127 0.873 7 N -0.367 5.367 8 C 0.391 3.609 9 O -0.453 6.453 10 C -0.159 4.159 11 C -0.204 4.204 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.174 4.174 15 C -0.157 4.157 16 C -0.104 4.104 17 C -0.040 4.040 18 N 0.066 4.934 19 C -0.519 4.519 20 H 0.136 0.864 21 C -0.184 4.184 22 N -0.474 5.474 23 Si 0.806 3.194 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.166 1.166 27 C -0.208 4.208 28 C 0.310 3.690 29 O -0.453 6.453 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.265 0.735 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.119 0.881 43 H 0.096 0.904 44 H 0.121 0.879 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.953 -7.367 -1.217 8.449 hybrid contribution 0.789 -0.723 0.187 1.087 sum -3.164 -8.091 -1.030 8.748 Atomic orbital electron populations 1.22119 0.94813 1.03462 1.01840 1.21613 0.95141 0.79706 1.04195 1.48415 1.64826 1.14651 1.06431 1.22397 1.04324 0.87991 0.87429 1.21742 0.93571 0.92291 0.89514 0.87255 1.46473 1.28037 1.06805 1.55392 1.17129 0.84505 0.82190 0.77041 1.90704 1.31631 1.70695 1.52320 1.20415 0.88219 0.95195 1.12109 1.20623 0.98445 0.94014 1.07356 1.18416 0.95685 0.94697 1.07233 1.20473 0.96234 0.95642 0.98682 1.20729 0.94578 0.98717 1.03345 1.21021 1.00651 0.92226 1.01812 1.20156 0.93250 0.97660 0.99305 1.18650 0.94496 0.87294 1.03535 1.40128 1.07509 1.06744 1.39062 1.19952 1.42388 0.86817 1.02730 0.86397 1.26437 0.96073 1.02817 0.93026 1.70053 1.33227 1.41687 1.02466 0.85037 0.79029 0.76358 0.78967 1.19737 1.19923 1.16641 1.22817 1.04383 0.95352 0.98218 1.20905 0.75892 0.87925 0.84290 1.90677 1.55614 1.76336 1.22645 0.89344 0.91544 0.94396 0.90868 0.87367 0.89208 0.86741 0.73496 0.84080 0.84979 0.83822 0.84694 0.88124 0.90385 0.87863 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.24 71.98 0.74 -1.76 16 2 C 0.11 1.95 6.65 86.38 0.57 2.52 16 3 N -0.61 -13.51 2.93 -817.98 -2.40 -15.91 16 4 C 0.10 2.06 7.08 86.83 0.61 2.67 16 5 C 0.13 3.60 3.58 46.05 0.16 3.77 16 6 H 0.11 3.04 7.46 -2.39 -0.02 3.02 16 7 N -0.71 -23.83 4.92 -441.29 -2.17 -26.01 16 8 C 0.60 25.07 7.76 86.51 0.67 25.74 16 9 O -0.57 -25.45 16.45 -4.23 -0.07 -25.52 16 10 C -0.04 -2.07 6.77 39.91 0.27 -1.80 16 11 C -0.18 -8.04 10.55 22.63 0.24 -7.80 16 12 C -0.16 -7.08 6.16 -21.33 -0.13 -7.21 16 13 C -0.09 -3.48 10.06 22.31 0.22 -3.25 16 14 C -0.15 -5.33 9.97 22.03 0.22 -5.11 16 15 C -0.14 -5.10 10.02 22.33 0.22 -4.88 16 16 C -0.08 -3.75 8.55 22.38 0.19 -3.56 16 17 C 0.07 3.62 6.04 39.06 0.24 3.86 16 18 N -0.27 -12.91 2.81 -331.34 -0.93 -13.84 16 19 C -0.39 -17.35 7.70 84.09 0.65 -16.71 16 20 H 0.12 4.77 6.42 -2.91 -0.02 4.75 16 21 C 0.03 1.20 4.66 84.95 0.40 1.59 16 22 N -0.85 -39.55 10.76 21.67 0.23 -39.32 16 23 Si 0.99 32.66 29.57 68.60 2.03 34.69 16 24 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 25 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 26 H -0.24 -7.26 7.11 99.48 0.71 -6.56 16 27 C -0.17 -4.58 6.59 30.59 0.20 -4.38 16 28 C 0.52 14.98 8.02 87.90 0.71 15.69 16 29 O -0.57 -20.55 17.59 -3.02 -0.05 -20.60 16 30 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.42 7.92 -2.38 -0.02 1.40 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.74 7.80 -2.38 -0.02 1.72 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 14.29 4.52 -92.71 -0.42 13.87 16 38 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 39 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.10 4.64 6.60 -2.91 -0.02 4.62 16 43 H 0.29 12.47 8.31 -92.70 -0.77 11.70 16 44 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.11 3.03 8.08 -2.39 -0.02 3.01 16 Total: -1.00 -63.47 374.97 3.43 -60.04 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: 0.61 Total: 47.07 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 6.19 Total: -0.60 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -5.27 Total: -95.08 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.12 Total: -46.12 kcal Atomic # 14 Polarization: 32.66 SS G_CDS: 2.03 Total: 34.69 kcal Total: -63.47 3.43 -60.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590776408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.960 kcal (2) G-P(sol) polarization free energy of solvation -63.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds