Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47200 * 2 1 4 4 C 1.35680 * 117.00012 * 179.97438 * 3 2 1 5 5 C 1.39004 * 120.01988 * 180.02562 * 4 3 2 6 6 N 1.32065 * 120.07468 * 179.97438 * 5 4 3 7 7 C 1.32069 * 120.13933 * 359.70882 * 6 5 4 8 8 C 1.39038 * 120.05172 * 0.56684 * 7 6 5 9 9 N 1.39397 * 120.04494 * 179.70822 * 8 7 6 10 10 C 1.34776 * 120.00312 * 174.92442 * 9 8 7 11 11 O 1.21273 * 120.00086 * 5.09344 * 10 9 8 12 12 C 1.50700 * 119.99979 * 185.09567 * 10 9 8 13 13 C 1.52998 * 109.47141 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.47596 * 305.00633 * 13 12 10 15 15 C 1.50706 * 109.46751 * 65.00493 * 13 12 10 16 16 H 1.08000 * 120.00226 * 34.95601 * 15 13 12 17 17 C 1.37880 * 119.99605 * 214.96065 * 15 13 12 18 18 N 1.31519 * 120.00142 * 5.00949 * 17 15 13 19 19 Si 1.86800 * 119.99809 * 185.00740 * 17 15 13 20 20 H 1.48498 * 109.47310 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46974 * 120.00182 * 19 17 15 22 22 H 1.48499 * 109.47085 * 239.99679 * 19 17 15 23 23 C 1.50701 * 109.47368 * 184.99996 * 13 12 10 24 24 C 1.38239 * 119.99798 * 294.77586 * 23 13 12 25 25 C 1.38233 * 119.99989 * 179.78338 * 24 23 13 26 26 C 1.38245 * 119.99671 * 0.44741 * 25 24 23 27 27 C 1.38228 * 120.00011 * 359.80595 * 26 25 24 28 28 C 1.38230 * 120.00417 * 115.04716 * 23 13 12 29 29 N 1.32544 * 120.02393 * 0.02562 * 4 3 2 30 30 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46710 * 299.99882 * 1 2 3 32 32 H 1.08996 * 109.47001 * 59.99573 * 1 2 3 33 33 H 1.08996 * 109.47301 * 240.00130 * 2 1 3 34 34 H 1.08996 * 109.47446 * 120.00129 * 2 1 3 35 35 H 1.07991 * 119.96505 * 359.96120 * 5 4 3 36 36 H 1.07998 * 119.97194 * 180.30324 * 7 6 5 37 37 H 0.97001 * 119.99994 * 354.91588 * 9 8 7 38 38 H 1.08998 * 109.47512 * 300.00123 * 12 10 9 39 39 H 1.09004 * 109.47005 * 60.00026 * 12 10 9 40 40 H 0.97001 * 120.00068 * 180.02562 * 18 17 15 41 41 H 1.07997 * 120.00171 * 359.97438 * 24 23 13 42 42 H 1.08001 * 120.00663 * 180.27583 * 25 24 23 43 43 H 1.07999 * 119.99841 * 179.83385 * 26 25 24 44 44 H 1.08007 * 119.99987 * 180.02562 * 27 26 25 45 45 H 1.08004 * 119.99514 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8832 2.8094 0.0011 6 7 5.1923 2.9836 0.0021 7 6 6.0004 1.9390 0.0085 8 6 5.4745 0.6519 0.0021 9 7 6.3275 -0.4506 0.0026 10 6 5.8200 -1.6953 0.0998 11 8 4.6189 -1.8626 0.0936 12 6 6.7451 -2.8793 0.2160 13 6 5.9197 -4.1639 0.3118 14 1 5.2135 -4.0814 1.1379 15 6 5.1647 -4.3730 -0.9756 16 1 5.6096 -4.0825 -1.9159 17 6 3.9058 -4.9349 -0.9530 18 7 3.3235 -5.1977 0.1967 19 14 3.0273 -5.3230 -2.5552 20 1 3.8906 -4.9355 -3.6996 21 1 2.7407 -6.7786 -2.6226 22 1 1.7523 -4.5642 -2.6170 23 6 6.8382 -5.3345 0.5511 24 6 7.7523 -5.7051 -0.4174 25 6 8.5979 -6.7760 -0.1961 26 6 8.5230 -7.4822 0.9900 27 6 7.6053 -7.1148 1.9563 28 6 6.7628 -6.0412 1.7367 29 7 4.1593 0.4743 0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2252 3.6656 0.0005 36 1 7.0705 2.0847 0.0142 37 1 7.2864 -0.3219 -0.0671 38 1 7.3888 -2.9252 -0.6624 39 1 7.3587 -2.7744 1.1109 40 1 2.4380 -5.5934 0.2126 41 1 7.8080 -5.1560 -1.3457 42 1 9.3151 -7.0629 -0.9509 43 1 9.1818 -8.3205 1.1618 44 1 7.5471 -7.6663 2.8832 45 1 6.0459 -5.7541 2.4918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592676855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = -10.438842 kcal Electronic energy + Delta-G solvation = -29380.074586 eV Core-core repulsion = 25362.709580 eV Total energy + Delta-G solvation = -4017.365007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46144 -40.72813 -39.83182 -39.36750 -36.40627 -35.62381 -34.58475 -33.43491 -32.81328 -31.50782 -30.98713 -30.04323 -27.65839 -26.15277 -25.11626 -24.18453 -23.71388 -23.13163 -21.81892 -20.98892 -19.94424 -18.73200 -18.48867 -17.82362 -17.73508 -17.57099 -17.48715 -16.88081 -16.47720 -16.35489 -15.69192 -15.49951 -15.27408 -15.23671 -14.82415 -14.25995 -13.99361 -13.94953 -13.83134 -13.68720 -13.60788 -13.56724 -13.20364 -12.91440 -12.76555 -12.69760 -12.52673 -12.35911 -12.31812 -12.03584 -11.83318 -11.72576 -11.30820 -11.04377 -10.91706 -10.88008 -10.48893 -9.93431 -9.54883 -9.22123 -9.20053 -8.04870 -6.06803 -0.17719 0.14575 0.77225 0.82466 1.32112 1.35031 1.41985 1.78678 1.88084 1.91545 2.43463 2.76849 3.06955 3.17375 3.35281 3.42496 3.47378 3.96873 4.01429 4.13935 4.20398 4.25267 4.35761 4.38164 4.40171 4.41677 4.54700 4.63384 4.72004 4.73769 4.84909 4.92468 4.96627 4.99721 5.08080 5.21552 5.37327 5.42710 5.51343 5.66375 5.77236 5.83863 5.90944 5.96386 6.09638 6.15852 6.40812 6.46023 6.50681 6.86936 7.01937 7.47891 7.55939 9.04577 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011160 B = 0.003725 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.442742 B = 7515.096735 C = 9141.463778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 O -0.301 6.301 4 C 0.285 3.715 5 C -0.003 4.003 6 N -0.385 5.385 7 C -0.012 4.012 8 C 0.349 3.651 9 N -0.648 5.648 10 C 0.494 3.506 11 O -0.477 6.477 12 C -0.111 4.111 13 C 0.079 3.921 14 H 0.029 0.971 15 C -0.484 4.484 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.912 5.912 19 Si 0.926 3.074 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.293 1.293 23 C -0.047 4.047 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.146 4.146 29 N -0.533 5.533 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.200 0.800 36 H 0.215 0.785 37 H 0.439 0.561 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.252 0.748 41 H 0.118 0.882 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.774 10.110 0.984 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.000 4.000 3 O -0.207 6.207 4 C 0.102 3.898 5 C -0.165 4.165 6 N -0.099 5.099 7 C -0.177 4.177 8 C 0.114 3.886 9 N -0.299 5.299 10 C 0.281 3.719 11 O -0.344 6.344 12 C -0.151 4.151 13 C 0.060 3.940 14 H 0.048 0.952 15 C -0.522 4.522 16 H 0.065 0.935 17 C -0.170 4.170 18 N -0.552 5.552 19 Si 0.753 3.247 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.220 1.220 23 C -0.048 4.048 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.165 4.165 29 N -0.269 5.269 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.217 0.783 36 H 0.232 0.768 37 H 0.280 0.720 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.149 0.851 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.501 9.956 1.057 12.510 hybrid contribution -0.808 -0.888 -0.774 1.428 sum 6.693 9.068 0.283 11.274 Atomic orbital electron populations 1.21780 0.90136 1.03624 1.04197 1.22511 0.96564 0.79925 1.01016 1.86198 1.16236 1.31006 1.87228 1.21223 0.85142 0.91093 0.92376 1.22979 0.92413 0.94562 1.06510 1.68427 1.02973 1.32179 1.06323 1.23549 1.02987 0.85177 1.05960 1.19688 0.87082 0.89248 0.92592 1.43896 1.10746 1.03414 1.71806 1.21577 0.90354 0.84041 0.75945 1.90869 1.17134 1.84156 1.42246 1.21704 0.97348 0.91940 1.04097 1.17651 0.91201 0.87665 0.97480 0.95214 1.20978 1.00110 1.38845 0.92243 0.93550 1.25396 0.98126 0.96088 0.97386 1.70042 1.14801 1.44707 1.25634 0.86009 0.78826 0.77464 0.82355 1.19061 1.20871 1.22026 1.20549 0.93625 0.98019 0.92608 1.21059 0.96150 0.98418 0.98584 1.21391 0.99498 0.95595 0.97940 1.21273 0.99943 1.01031 0.94210 1.21282 0.96306 0.96866 1.00211 1.21126 0.99689 0.97904 0.97748 1.68006 1.05149 1.33901 1.19866 0.90067 0.90217 0.90441 0.94131 0.93803 0.78310 0.76822 0.71968 0.87763 0.88287 0.93904 0.86403 0.84149 0.83972 0.85133 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 10.28 71.98 0.74 -2.97 16 2 C 0.08 2.69 6.04 71.98 0.43 3.12 16 3 O -0.30 -9.96 10.13 -89.97 -0.91 -10.87 16 4 C 0.28 9.48 7.49 84.77 0.63 10.12 16 5 C 0.00 -0.07 11.17 84.84 0.95 0.88 16 6 N -0.39 -9.55 10.48 -194.29 -2.04 -11.59 16 7 C -0.01 -0.27 11.07 84.85 0.94 0.67 16 8 C 0.35 10.62 7.42 132.81 0.99 11.60 16 9 N -0.65 -17.90 5.39 -308.22 -1.66 -19.57 16 10 C 0.49 19.04 7.54 87.66 0.66 19.70 16 11 O -0.48 -24.16 13.27 -3.01 -0.04 -24.20 16 12 C -0.11 -3.92 4.97 29.85 0.15 -3.77 16 13 C 0.08 3.70 1.77 -12.28 -0.02 3.68 16 14 H 0.03 1.67 6.80 -2.39 -0.02 1.65 16 15 C -0.48 -25.65 6.29 25.60 0.16 -25.49 16 16 H 0.05 2.43 7.82 -2.91 -0.02 2.41 16 17 C 0.03 1.66 5.45 84.65 0.46 2.12 16 18 N -0.91 -55.14 12.77 21.45 0.27 -54.87 16 19 Si 0.93 45.95 29.54 68.60 2.03 47.98 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 23 C -0.05 -2.00 4.77 -19.87 -0.09 -2.09 16 24 C -0.12 -4.54 8.88 22.27 0.20 -4.34 16 25 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 26 C -0.15 -4.30 10.05 22.27 0.22 -4.08 16 27 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 28 C -0.15 -5.97 9.67 22.27 0.22 -5.75 16 29 N -0.53 -20.30 6.96 -305.37 -2.12 -22.42 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.67 8.11 -2.39 -0.02 1.66 16 34 H 0.04 1.79 8.11 -2.39 -0.02 1.77 16 35 H 0.20 3.87 8.06 -2.92 -0.02 3.85 16 36 H 0.22 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.44 7.21 8.71 -92.71 -0.81 6.40 16 38 H 0.10 3.17 7.90 -2.39 -0.02 3.15 16 39 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.12 4.13 7.82 -2.91 -0.02 4.11 16 42 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 45 H 0.09 4.08 7.95 -2.91 -0.02 4.05 16 Total: -1.00 -77.47 387.20 2.81 -74.66 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.21 Total: 25.17 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 7.08 Total: -4.29 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -5.55 Total: -108.44 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.95 Total: -35.07 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.47 2.81 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592676855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.218 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds