Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34163 * 125.16424 * 2 1 4 4 C 1.37962 * 107.88876 * 180.16551 * 3 2 1 5 5 C 1.47280 * 126.80796 * 179.83853 * 4 3 2 6 6 O 1.21626 * 120.00194 * 173.52097 * 5 4 3 7 7 N 1.34779 * 120.00398 * 353.51239 * 5 4 3 8 8 C 1.47420 * 125.65321 * 177.04115 * 7 5 4 9 9 C 1.54905 * 104.83545 * 203.86765 * 8 7 5 10 10 C 1.55152 * 101.58271 * 322.99348 * 9 8 7 11 11 O 1.42899 * 110.72333 * 277.13802 * 10 9 8 12 12 C 1.50701 * 110.72225 * 154.03954 * 10 9 8 13 13 H 1.07999 * 119.99747 * 0.02562 * 12 10 9 14 14 C 1.37879 * 120.00009 * 179.97438 * 12 10 9 15 15 N 1.31509 * 119.99960 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99605 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47422 * 90.00813 * 16 14 12 18 18 H 1.48510 * 109.46997 * 210.00253 * 16 14 12 19 19 H 1.48499 * 109.47493 * 330.00127 * 16 14 12 20 20 C 1.47024 * 125.64276 * 356.74056 * 7 5 4 21 21 C 1.46602 * 106.38043 * 359.57219 * 4 3 2 22 22 C 1.48296 * 126.50781 * 180.24439 * 21 4 3 23 23 C 1.39383 * 120.12568 * 324.71845 * 22 21 4 24 24 C 1.38009 * 119.86863 * 179.79027 * 23 22 21 25 25 C 1.38324 * 120.12526 * 0.49660 * 24 23 22 26 26 C 1.38327 * 120.25762 * 359.73510 * 25 24 23 27 27 C 1.38014 * 120.12219 * 0.02581 * 26 25 24 28 28 N 1.31362 * 106.97721 * 0.26472 * 21 4 3 29 29 H 1.09000 * 109.47578 * 270.29223 * 1 2 3 30 30 H 1.09002 * 109.47421 * 30.29360 * 1 2 3 31 31 H 1.09001 * 109.47165 * 150.28920 * 1 2 3 32 32 H 1.08002 * 126.05666 * 0.03210 * 3 2 1 33 33 H 1.09001 * 110.37035 * 322.71483 * 8 7 5 34 34 H 1.09008 * 110.36249 * 84.92034 * 8 7 5 35 35 H 1.08994 * 111.00222 * 81.06905 * 9 8 7 36 36 H 1.08997 * 111.00342 * 204.91717 * 9 8 7 37 37 H 0.96697 * 114.00390 * 180.02562 * 11 10 9 38 38 H 0.97004 * 119.99713 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.88439 * 298.61959 * 20 7 5 40 40 H 1.09001 * 109.88349 * 59.78919 * 20 7 5 41 41 H 1.07997 * 120.05834 * 0.02562 * 23 22 21 42 42 H 1.08002 * 119.93001 * 180.23079 * 24 23 22 43 43 H 1.07997 * 119.87043 * 179.72360 * 25 24 23 44 44 H 1.07999 * 119.93862 * 180.02562 * 26 25 24 45 45 H 1.07998 * 120.05773 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2376 1.0968 0.0000 4 6 3.5550 0.6871 -0.0038 5 6 4.7477 1.5510 -0.0085 6 8 5.8546 1.0603 0.1073 7 7 4.6129 2.8855 -0.1413 8 6 5.7109 3.8684 -0.1009 9 6 5.0368 5.1991 0.3166 10 6 3.6783 5.1070 -0.4274 11 8 3.8156 5.5312 -1.7850 12 6 2.6266 5.9221 0.2801 13 1 2.8784 6.4651 1.1790 14 6 1.3431 5.9753 -0.2207 15 7 1.0366 5.3143 -1.3156 16 14 0.0397 6.9861 0.6559 17 1 0.0411 8.3700 0.1173 18 1 -1.2942 6.3711 0.4366 19 1 0.3355 7.0208 2.1107 20 6 3.3469 3.6014 -0.3567 21 6 3.5321 -0.7787 0.0043 22 6 4.7102 -1.6795 0.0089 23 6 5.8634 -1.3264 -0.6897 24 6 6.9582 -2.1667 -0.6783 25 6 6.9089 -3.3619 0.0163 26 6 5.7653 -3.7196 0.7075 27 6 4.6662 -2.8850 0.7071 28 7 2.2699 -1.1426 0.0063 29 1 -0.3634 0.0052 1.0276 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3633 -0.8926 -0.5093 32 1 1.8899 2.1193 0.0005 33 1 6.4572 3.5734 0.6367 34 1 6.1692 3.9658 -1.0851 35 1 4.8892 5.2405 1.3957 36 1 5.6149 6.0555 -0.0302 37 1 2.9943 5.4931 -2.2940 38 1 0.1335 5.3515 -1.6677 39 1 2.8925 3.2775 -1.2930 40 1 2.6669 3.4101 0.4734 41 1 5.9014 -0.3955 -1.2358 42 1 7.8537 -1.8923 -1.2162 43 1 7.7664 -4.0183 0.0188 44 1 5.7325 -4.6538 1.2484 45 1 3.7737 -3.1655 1.2468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = 15.196611 kcal Electronic energy + Delta-G solvation = -30048.008764 eV Core-core repulsion = 26031.755394 eV Total energy + Delta-G solvation = -4016.253370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34779 -40.63296 -39.79272 -38.76169 -35.98974 -34.67798 -34.14923 -32.80739 -31.82433 -31.56168 -30.89136 -29.48001 -27.74797 -26.96566 -25.05867 -23.78466 -23.57408 -22.28016 -21.78411 -20.95610 -20.31884 -19.10572 -18.26676 -17.76084 -17.30559 -17.13621 -16.79203 -16.63505 -16.18592 -16.05109 -15.86950 -15.61255 -15.02138 -14.79156 -14.70565 -14.51828 -14.21751 -14.10450 -13.73649 -13.67976 -13.51123 -13.42029 -13.26270 -13.22028 -12.82708 -12.48973 -12.34138 -12.25763 -12.24494 -12.11670 -12.02937 -11.74933 -11.18431 -10.99615 -10.84723 -10.60420 -10.22256 -9.94085 -9.76282 -9.50187 -9.24156 -8.23734 -6.38353 0.01589 0.43561 0.57132 1.23360 1.34670 1.44621 1.50384 1.57121 2.13392 2.36309 2.41748 2.95601 3.01594 3.19689 3.49600 3.74943 3.91301 4.00670 4.08605 4.10233 4.17639 4.26754 4.30785 4.34838 4.36170 4.38826 4.44651 4.60766 4.62406 4.62600 4.75706 4.77954 4.92170 4.96239 5.12299 5.18857 5.20179 5.31620 5.35367 5.51355 5.58212 5.64562 5.68978 5.78475 5.79427 6.06748 6.11233 6.39932 6.64496 6.67414 7.24258 7.33460 7.45669 8.82364 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003618 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.131551 B = 7736.524369 C = 9198.367178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.360 5.360 3 C 0.109 3.891 4 C -0.308 4.308 5 C 0.597 3.403 6 O -0.571 6.571 7 N -0.613 5.613 8 C 0.116 3.884 9 C -0.113 4.113 10 C 0.234 3.766 11 O -0.592 6.592 12 C -0.555 4.555 13 H 0.062 0.938 14 C 0.039 3.961 15 N -0.910 5.910 16 Si 0.956 3.044 17 H -0.283 1.283 18 H -0.277 1.277 19 H -0.273 1.273 20 C 0.106 3.894 21 C 0.155 3.845 22 C -0.048 4.048 23 C -0.071 4.071 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.130 4.130 27 C -0.099 4.099 28 N -0.300 5.300 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.206 0.794 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.380 0.620 38 H 0.274 0.726 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 -13.027 2.604 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.138 5.138 3 C -0.041 4.041 4 C -0.323 4.323 5 C 0.388 3.612 6 O -0.453 6.453 7 N -0.345 5.345 8 C -0.006 4.006 9 C -0.151 4.151 10 C 0.194 3.806 11 O -0.402 6.402 12 C -0.593 4.593 13 H 0.081 0.919 14 C -0.162 4.162 15 N -0.550 5.550 16 Si 0.782 3.218 17 H -0.209 1.209 18 H -0.202 1.202 19 H -0.197 1.197 20 C -0.016 4.016 21 C -0.013 4.013 22 C -0.050 4.050 23 C -0.091 4.091 24 C -0.154 4.154 25 C -0.121 4.121 26 C -0.147 4.147 27 C -0.118 4.118 28 N -0.120 5.120 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.222 0.778 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.231 0.769 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.156 0.844 43 H 0.174 0.826 44 H 0.173 0.827 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.850 -14.272 2.733 14.556 hybrid contribution -1.137 1.696 -0.008 2.042 sum -0.287 -12.575 2.726 12.871 Atomic orbital electron populations 1.22419 0.70840 1.06544 1.05533 1.48546 1.08565 1.02422 1.54287 1.24074 0.90503 0.94744 0.94816 1.21249 0.92975 0.93037 1.25047 1.17030 0.87802 0.80274 0.76052 1.90681 1.27299 1.73697 1.53655 1.48558 1.10580 1.04940 1.70416 1.22164 0.89676 0.87839 1.00928 1.22763 0.96110 0.96021 1.00193 1.19683 0.92334 0.88039 0.80562 1.86116 1.39447 1.89542 1.25083 1.21773 0.94987 1.30990 1.11587 0.91937 1.25589 0.99828 0.95414 0.95363 1.69635 1.21701 1.42093 1.21536 0.85587 0.78454 0.78762 0.78978 1.20899 1.20248 1.19748 1.22994 0.84279 0.95087 0.99266 1.22051 0.91781 0.90710 0.96785 1.17871 0.90982 0.94219 1.01909 1.21375 0.92371 0.98186 0.97159 1.21320 0.98175 0.94950 1.00982 1.21618 0.98880 0.96170 0.95458 1.21372 0.92582 1.00471 1.00320 1.21318 0.99715 0.92595 0.98208 1.77183 1.01067 1.07946 1.25822 0.88463 0.87294 0.87508 0.77822 0.90509 0.92223 0.89828 0.89762 0.76863 0.91608 0.92843 0.91671 0.87075 0.84368 0.82613 0.82654 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 11.39 127.77 1.46 3.07 16 2 N -0.36 -10.81 3.95 -367.94 -1.45 -12.26 16 3 C 0.11 3.72 9.99 84.27 0.84 4.57 16 4 C -0.31 -11.98 6.21 -18.78 -0.12 -12.10 16 5 C 0.60 25.05 7.57 86.62 0.66 25.70 16 6 O -0.57 -25.29 13.07 -4.11 -0.05 -25.34 16 7 N -0.61 -25.11 3.33 -815.82 -2.71 -27.83 16 8 C 0.12 4.45 6.88 86.85 0.60 5.05 16 9 C -0.11 -4.42 6.22 31.98 0.20 -4.22 16 10 C 0.23 10.51 0.86 -10.35 -0.01 10.50 16 11 O -0.59 -28.55 13.08 -148.98 -1.95 -30.50 16 12 C -0.56 -26.40 8.11 25.60 0.21 -26.19 16 13 H 0.06 2.98 7.76 -2.91 -0.02 2.95 16 14 C 0.04 1.81 5.28 84.66 0.45 2.26 16 15 N -0.91 -41.97 10.98 21.45 0.24 -41.74 16 16 Si 0.96 37.44 29.54 68.60 2.03 39.46 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 C 0.11 4.47 3.73 86.73 0.32 4.80 16 21 C 0.15 5.72 6.94 44.08 0.31 6.03 16 22 C -0.05 -1.64 5.70 -20.05 -0.11 -1.75 16 23 C -0.07 -2.43 7.75 22.49 0.17 -2.26 16 24 C -0.14 -3.65 10.03 22.24 0.22 -3.42 16 25 C -0.10 -2.20 10.04 22.31 0.22 -1.98 16 26 C -0.13 -2.84 10.03 22.24 0.22 -2.61 16 27 C -0.10 -2.78 9.76 22.49 0.22 -2.56 16 28 N -0.30 -10.21 12.47 -44.52 -0.56 -10.76 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 1.79 8.13 -2.39 -0.02 1.77 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.21 6.95 4.53 -2.91 -0.01 6.93 16 33 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 34 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.08 3.12 8.03 -2.39 -0.02 3.10 16 36 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.38 18.67 6.98 -74.06 -0.52 18.15 16 38 H 0.27 12.01 8.31 -92.71 -0.77 11.24 16 39 H 0.05 2.37 7.55 -2.39 -0.02 2.35 16 40 H 0.07 2.74 5.90 -2.39 -0.01 2.72 16 41 H 0.11 4.33 5.88 -2.91 -0.02 4.31 16 42 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 43 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -60.75 370.20 1.91 -58.84 By element: Atomic # 1 Polarization: 44.73 SS G_CDS: 0.52 Total: 45.25 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.86 Total: 4.88 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.49 Total: -92.59 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -2.00 Total: -55.84 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.46 kcal Total: -60.75 1.91 -58.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.032 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds