Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39906 * 125.80671 * 2 1 4 4 C 1.30466 * 109.21405 * 179.73427 * 3 2 1 5 5 C 1.41085 * 108.30349 * 0.38259 * 4 3 2 6 6 C 1.47175 * 126.47918 * 179.87691 * 5 4 3 7 7 O 1.21638 * 120.00111 * 179.68485 * 6 5 4 8 8 N 1.34780 * 120.00239 * 359.69319 * 6 5 4 9 9 C 1.47026 * 125.64391 * 359.97204 * 8 6 5 10 10 C 1.54330 * 107.26840 * 178.97562 * 9 8 6 11 11 C 1.55155 * 102.94292 * 337.81024 * 10 9 8 12 12 O 1.42907 * 111.00242 * 277.42480 * 11 10 9 13 13 C 1.50695 * 111.03665 * 153.58963 * 11 10 9 14 14 H 1.07999 * 120.00448 * 6.33399 * 13 11 10 15 15 C 1.37879 * 119.99755 * 186.32756 * 13 11 10 16 16 N 1.31518 * 120.00166 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99927 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47051 * 60.00161 * 17 15 13 19 19 H 1.48502 * 109.47072 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47104 * 299.99951 * 17 15 13 21 21 C 1.47420 * 125.65180 * 180.02562 * 8 6 5 22 22 C 1.35180 * 125.80451 * 179.97438 * 2 1 3 23 23 C 1.47738 * 126.47534 * 0.02562 * 22 2 1 24 24 C 1.39605 * 120.15078 * 134.72445 * 23 22 2 25 25 C 1.37959 * 119.84964 * 179.69629 * 24 23 22 26 26 C 1.38364 * 120.14339 * 0.57766 * 25 24 23 27 27 C 1.38359 * 120.30217 * 359.72214 * 26 25 24 28 28 C 1.37941 * 120.15243 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46636 * 270.02470 * 1 2 3 30 30 H 1.08995 * 109.46907 * 30.02234 * 1 2 3 31 31 H 1.08994 * 109.47247 * 150.02822 * 1 2 3 32 32 H 1.08000 * 125.84628 * 180.25388 * 4 3 2 33 33 H 1.08998 * 109.88351 * 298.39161 * 9 8 6 34 34 H 1.08998 * 109.88379 * 59.55951 * 9 8 6 35 35 H 1.08998 * 110.71700 * 96.16950 * 10 9 8 36 36 H 1.08991 * 110.72004 * 219.44241 * 10 9 8 37 37 H 0.96693 * 113.99773 * 173.65155 * 12 11 10 38 38 H 0.97002 * 119.99812 * 179.97438 * 16 15 13 39 39 H 1.08997 * 110.36858 * 322.93289 * 21 8 6 40 40 H 1.08999 * 110.36307 * 85.25503 * 21 8 6 41 41 H 1.07997 * 120.07965 * 359.97438 * 24 23 22 42 42 H 1.07994 * 119.92834 * 180.29575 * 25 24 23 43 43 H 1.08005 * 119.84604 * 179.73341 * 26 25 24 44 44 H 1.08006 * 119.92497 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.08020 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2836 1.1346 0.0000 4 6 3.5339 0.7621 0.0057 5 6 3.5760 -0.6481 0.0008 6 6 4.7850 -1.4874 0.0020 7 8 4.6840 -2.6996 0.0030 8 7 6.0043 -0.9129 0.0021 9 6 6.2700 0.5331 0.0005 10 6 7.8020 0.7174 0.0277 11 6 8.3036 -0.6287 0.6140 12 8 8.2244 -0.6270 2.0409 13 6 9.7068 -0.9296 0.1542 14 1 10.2582 -0.1951 -0.4139 15 6 10.2867 -2.1428 0.4588 16 7 9.6152 -3.0376 1.1503 17 14 12.0259 -2.5163 -0.1118 18 1 12.9611 -1.5168 0.4641 19 1 12.4140 -3.8764 0.3406 20 1 12.0848 -2.4527 -1.5942 21 6 7.2922 -1.6303 0.0027 22 6 2.2559 -1.0963 0.0005 23 6 1.8062 -2.5036 0.0006 24 6 2.4023 -3.4303 -0.8567 25 6 1.9818 -4.7442 -0.8470 26 6 0.9636 -5.1416 0.0014 27 6 0.3643 -4.2270 0.8491 28 6 0.7793 -2.9115 0.8541 29 1 -0.3632 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 4.3900 1.4205 0.0110 33 1 5.8583 0.9847 -0.9020 34 1 5.8257 0.9927 0.8834 35 1 8.1902 0.8677 -0.9797 36 1 8.0791 1.5480 0.6768 37 1 8.4347 -1.4788 2.4474 38 1 10.0231 -3.8912 1.3643 39 1 7.2267 -2.5269 0.6189 40 1 7.5827 -1.8890 -1.0155 41 1 3.1938 -3.1203 -1.5228 42 1 2.4453 -5.4631 -1.5063 43 1 0.6353 -6.1706 0.0019 44 1 -0.4303 -4.5438 1.5085 45 1 0.3109 -2.1987 1.5166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 14.018116 kcal Electronic energy + Delta-G solvation = -29967.211607 eV Core-core repulsion = 25950.907134 eV Total energy + Delta-G solvation = -4016.304473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58184 -40.61503 -39.77519 -38.68162 -36.08945 -34.59644 -34.21057 -33.16303 -31.94959 -31.72151 -30.13287 -29.65246 -28.17989 -26.70953 -24.97624 -24.00988 -23.59134 -22.27747 -21.79741 -21.23866 -20.10637 -19.07141 -18.46712 -17.77776 -17.21604 -16.98453 -16.91622 -16.40995 -16.28711 -16.11201 -15.81646 -15.39388 -15.20899 -14.79396 -14.71163 -14.59655 -14.37575 -14.08768 -13.81449 -13.69570 -13.55929 -13.44250 -13.38338 -13.11731 -12.79792 -12.49581 -12.38317 -12.27145 -12.21183 -12.07391 -12.00846 -11.95810 -11.16087 -10.88467 -10.78196 -10.62539 -10.27046 -10.00150 -9.82655 -9.49602 -9.24535 -8.22112 -6.39530 -0.23185 0.48363 0.79079 1.08237 1.32787 1.44709 1.44899 1.53126 2.18921 2.40985 2.43666 2.83064 3.03884 3.30968 3.41592 3.79429 3.87825 3.90033 4.04905 4.10206 4.16975 4.22208 4.25863 4.31891 4.33744 4.42935 4.46738 4.53124 4.59185 4.65232 4.74611 4.79112 4.93680 5.08835 5.10510 5.12110 5.25673 5.36152 5.44060 5.45732 5.49028 5.54714 5.57777 5.77964 5.79849 6.01950 6.10212 6.41811 6.66053 6.77230 7.28682 7.31957 7.37145 8.82722 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.003350 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.375863 B = 8356.395450 C = 9804.278910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.351 5.351 3 N -0.305 5.305 4 C 0.074 3.926 5 C -0.301 4.301 6 C 0.589 3.411 7 O -0.584 6.584 8 N -0.610 5.610 9 C 0.100 3.900 10 C -0.113 4.113 11 C 0.232 3.768 12 O -0.587 6.587 13 C -0.557 4.557 14 H 0.069 0.931 15 C 0.027 3.973 16 N -0.915 5.915 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.270 1.270 21 C 0.117 3.883 22 C 0.191 3.809 23 C -0.069 4.069 24 C -0.058 4.058 25 C -0.139 4.139 26 C -0.100 4.100 27 C -0.126 4.126 28 C -0.100 4.100 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.218 0.782 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.372 0.628 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.132 0.868 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.390 2.807 -3.064 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.130 5.130 3 N -0.124 5.124 4 C -0.112 4.112 5 C -0.316 4.316 6 C 0.381 3.619 7 O -0.467 6.467 8 N -0.342 5.342 9 C -0.022 4.022 10 C -0.151 4.151 11 C 0.192 3.808 12 O -0.395 6.395 13 C -0.595 4.595 14 H 0.087 0.913 15 C -0.174 4.174 16 N -0.554 5.554 17 Si 0.788 3.212 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.195 1.195 21 C -0.006 4.006 22 C 0.057 3.943 23 C -0.071 4.071 24 C -0.078 4.078 25 C -0.157 4.157 26 C -0.118 4.118 27 C -0.143 4.143 28 C -0.118 4.118 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.234 0.766 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.220 0.780 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.150 0.850 43 H 0.171 0.829 44 H 0.178 0.822 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.653 3.691 -3.103 23.160 hybrid contribution 2.285 -1.771 -0.111 2.893 sum -20.367 1.920 -3.213 20.709 Atomic orbital electron populations 1.22455 0.70976 1.06450 1.05630 1.48897 1.08271 1.02006 1.53828 1.77087 1.01958 1.07654 1.25746 1.24897 0.96130 0.93616 0.96538 1.20144 0.92146 0.94332 1.24978 1.17254 0.81963 0.86671 0.76049 1.90720 1.86641 1.15294 1.54003 1.48513 1.05200 1.08832 1.71627 1.22470 0.97145 0.80610 1.02016 1.22660 0.93026 0.97592 1.01779 1.19867 0.91434 0.91065 0.78478 1.86099 1.92774 1.38582 1.22003 1.21782 1.00050 1.01536 1.36173 0.91269 1.25817 1.01793 0.95632 0.94136 1.69849 1.38786 1.07595 1.39189 0.85537 0.79704 0.77108 0.78848 1.19467 1.21204 1.19464 1.22724 0.81890 0.96969 0.99045 1.19910 0.89542 0.88771 0.96045 1.18017 0.99682 0.88581 1.00834 1.21147 0.95691 0.93798 0.97128 1.21308 0.98346 0.95098 1.00987 1.21664 0.94710 1.01120 0.94292 1.21395 1.01164 0.92141 0.99618 1.21428 0.95227 0.97927 0.97245 0.88111 0.87192 0.87717 0.76556 0.88821 0.90403 0.89095 0.89409 0.77975 0.92252 0.93628 0.94083 0.88161 0.84961 0.82884 0.82171 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.17 127.77 1.30 2.43 16 2 N -0.35 -8.77 4.01 -355.66 -1.43 -10.20 16 3 N -0.30 -8.55 12.48 -56.40 -0.70 -9.25 16 4 C 0.07 2.19 10.43 85.59 0.89 3.08 16 5 C -0.30 -10.68 6.09 -19.95 -0.12 -10.80 16 6 C 0.59 25.46 7.73 86.59 0.67 26.13 16 7 O -0.58 -28.57 13.23 -4.15 -0.05 -28.62 16 8 N -0.61 -26.14 3.33 -815.91 -2.71 -28.86 16 9 C 0.10 3.38 4.98 86.73 0.43 3.81 16 10 C -0.11 -4.30 6.13 31.78 0.19 -4.10 16 11 C 0.23 11.35 0.87 -10.15 -0.01 11.34 16 12 O -0.59 -30.67 13.16 -148.98 -1.96 -32.63 16 13 C -0.56 -29.23 8.27 25.60 0.21 -29.02 16 14 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 15 C 0.03 1.44 5.29 84.65 0.45 1.88 16 16 N -0.92 -50.66 10.69 21.45 0.23 -50.43 16 17 Si 0.96 42.12 29.54 68.60 2.03 44.15 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 C 0.12 5.86 5.39 86.86 0.47 6.33 16 22 C 0.19 5.86 6.50 41.43 0.27 6.13 16 23 C -0.07 -1.99 5.07 -20.10 -0.10 -2.09 16 24 C -0.06 -1.84 7.54 22.53 0.17 -1.67 16 25 C -0.14 -3.57 10.03 22.23 0.22 -3.35 16 26 C -0.10 -1.93 10.04 22.33 0.22 -1.71 16 27 C -0.13 -2.19 10.03 22.23 0.22 -1.97 16 28 C -0.10 -2.11 8.63 22.53 0.19 -1.91 16 29 H 0.10 0.94 8.05 -2.39 -0.02 0.92 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.13 7.30 -2.39 -0.02 1.11 16 32 H 0.22 5.39 4.46 -2.91 -0.01 5.37 16 33 H 0.09 2.54 7.01 -2.39 -0.02 2.52 16 34 H 0.08 2.43 6.82 -2.39 -0.02 2.42 16 35 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 36 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.37 20.44 7.56 -74.06 -0.56 19.88 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.05 2.63 7.33 -2.39 -0.02 2.62 16 40 H 0.04 2.15 8.03 -2.39 -0.02 2.13 16 41 H 0.10 3.71 6.81 -2.91 -0.02 3.69 16 42 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 45 H 0.14 2.25 7.34 -2.91 -0.02 2.23 16 Total: -1.00 -72.34 366.25 1.56 -70.78 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: 0.48 Total: 40.54 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.69 Total: 4.52 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -4.61 Total: -98.73 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: -2.02 Total: -61.25 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.34 1.56 -70.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.799 kcal (2) G-P(sol) polarization free energy of solvation -72.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds