Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36464 * 119.18068 * 2 1 4 4 C 1.48287 * 118.87489 * 0.02564 * 3 2 1 5 5 O 1.21481 * 120.00133 * 48.62653 * 4 3 2 6 6 N 1.34782 * 120.00124 * 228.63439 * 4 3 2 7 7 C 1.46966 * 120.59071 * 2.72892 * 6 4 3 8 8 C 1.53812 * 108.39821 * 124.76323 * 7 6 4 9 9 N 1.46963 * 108.58071 * 49.63266 * 8 7 6 10 10 C 1.36934 * 120.59477 * 124.62609 * 9 8 7 11 11 H 1.08003 * 120.00283 * 212.57233 * 10 9 8 12 12 C 1.38815 * 120.00008 * 32.56194 * 10 9 8 13 13 N 1.31619 * 119.99668 * 12.70455 * 12 10 9 14 14 Si 1.86803 * 120.00339 * 192.69749 * 12 10 9 15 15 H 1.48501 * 109.46969 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46900 * 120.00200 * 14 12 10 17 17 H 1.48493 * 109.47042 * 240.00435 * 14 12 10 18 18 C 1.46967 * 118.81310 * 304.65418 * 9 8 7 19 19 C 1.46960 * 120.59419 * 183.01379 * 6 4 3 20 20 C 1.35680 * 122.25677 * 179.97438 * 3 2 1 21 21 C 1.42055 * 119.93822 * 0.02762 * 20 3 2 22 22 O 1.21930 * 121.07524 * 179.97438 * 21 20 3 23 23 C 1.47225 * 117.86080 * 359.97438 * 21 20 3 24 24 C 1.39583 * 121.36147 * 180.02562 * 23 21 20 25 25 C 1.36641 * 119.69345 * 179.97438 * 24 23 21 26 26 C 1.38887 * 120.56097 * 0.02562 * 25 24 23 27 27 C 1.37717 * 120.71576 * 0.02562 * 26 25 24 28 28 C 1.37484 * 119.18097 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46944 * 83.59297 * 1 2 3 30 30 H 1.08999 * 109.47021 * 203.58914 * 1 2 3 31 31 H 1.08997 * 109.47045 * 323.59223 * 1 2 3 32 32 H 1.09003 * 109.60975 * 244.54666 * 7 6 4 33 33 H 1.08996 * 109.61476 * 5.05461 * 7 6 4 34 34 H 1.09001 * 109.73542 * 289.84588 * 8 7 6 35 35 H 1.09001 * 109.53149 * 169.30433 * 8 7 6 36 36 H 0.97005 * 119.99940 * 179.97438 * 13 12 10 37 37 H 1.09008 * 109.60267 * 295.47691 * 18 9 8 38 38 H 1.08999 * 109.61167 * 174.97270 * 18 9 8 39 39 H 1.09002 * 109.60944 * 354.94048 * 19 6 4 40 40 H 1.08994 * 109.61016 * 115.45817 * 19 6 4 41 41 H 1.07996 * 120.03165 * 179.97438 * 20 3 2 42 42 H 1.08000 * 120.15148 * 359.95473 * 24 23 21 43 43 H 1.08000 * 119.72157 * 179.71643 * 25 24 23 44 44 H 1.07996 * 119.64562 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.13787 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1304 1.1914 0.0000 4 6 1.3458 2.4498 0.0006 5 8 0.4346 2.5971 0.7904 6 7 1.6434 3.4299 -0.8753 7 6 2.7034 3.2424 -1.8759 8 6 2.1070 3.5028 -3.2696 9 7 1.3816 4.7805 -3.2372 10 6 1.6846 5.7767 -4.1265 11 1 1.5887 6.8113 -3.8317 12 6 2.1154 5.4569 -5.4067 13 7 1.9971 4.2240 -5.8520 14 14 2.8627 6.7763 -6.4977 15 1 2.8831 8.0693 -5.7676 16 1 4.2503 6.3912 -6.8604 17 1 2.0494 6.9171 -7.7321 18 6 0.3255 4.9702 -2.2329 19 6 0.9181 4.7077 -0.8429 20 6 3.4852 1.2643 0.0005 21 6 4.2592 0.0731 0.0005 22 8 5.4778 0.1143 0.0005 23 6 3.5426 -1.2130 0.0005 24 6 4.2302 -2.4277 0.0010 25 6 3.5307 -3.6015 0.0015 26 6 2.1419 -3.5959 0.0009 27 6 1.4432 -2.4091 -0.0006 28 6 2.1353 -1.2003 -0.0005 29 1 -0.3633 0.1147 -1.0213 30 1 -0.3633 -0.9418 0.4112 31 1 -0.3633 0.8271 0.6099 32 1 3.5149 3.9447 -1.6852 33 1 3.0802 2.2210 -1.8226 34 1 1.4197 2.6985 -3.5320 35 1 2.9095 3.5562 -4.0052 36 1 2.2977 4.0005 -6.7468 37 1 -0.4887 4.2703 -2.4217 38 1 -0.0486 5.9927 -2.2840 39 1 0.1155 4.6542 -0.1072 40 1 1.6054 5.5119 -0.5804 41 1 3.9747 2.2269 0.0001 42 1 5.3102 -2.4398 0.0006 43 1 4.0623 -4.5416 -0.0028 44 1 1.6039 -4.5323 0.0009 45 1 0.3632 -2.4156 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 28.675418 kcal Electronic energy + Delta-G solvation = -30181.522435 eV Core-core repulsion = 26165.853550 eV Total energy + Delta-G solvation = -4015.668885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65535 -39.84418 -38.22782 -37.56251 -36.81124 -34.29779 -33.04218 -31.65730 -30.88919 -30.58713 -30.19696 -27.33627 -26.92699 -25.23431 -24.02905 -23.57543 -22.89576 -21.68635 -20.81625 -19.21689 -18.86946 -18.24957 -17.55808 -16.69449 -16.19541 -15.91038 -15.60934 -15.43695 -15.00230 -14.86471 -14.71610 -14.49566 -14.24103 -14.06081 -13.80398 -13.60092 -13.49972 -13.42450 -13.24267 -12.74227 -12.67116 -12.32937 -12.11641 -11.87304 -11.52567 -11.39722 -11.30652 -10.94008 -10.85653 -10.60548 -10.38887 -10.22093 -10.13983 -9.90423 -9.55419 -9.38138 -9.21981 -8.71335 -8.52328 -7.76897 -6.77400 -5.94069 -3.44687 0.42767 0.73564 1.42090 2.05178 2.70933 2.98096 3.07607 3.29415 3.37916 3.39385 3.81720 4.05453 4.29609 4.34215 4.37869 4.58056 4.68821 4.90268 5.04333 5.06491 5.15392 5.17710 5.25770 5.32032 5.52862 5.58294 5.62727 5.64533 5.67660 5.70969 5.76678 5.86946 5.97649 6.03134 6.13290 6.17833 6.23891 6.31134 6.40642 6.58010 6.60845 6.70494 6.84418 7.04390 7.31391 7.50356 7.66729 7.81964 8.00546 8.29685 9.03373 9.64025 10.22127 11.13814 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003279 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.844357 B = 8537.126693 C = 9259.068622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.480 5.480 3 C 0.182 3.818 4 C 0.546 3.454 5 O -0.540 6.540 6 N -0.568 5.568 7 C 0.061 3.939 8 C 0.162 3.838 9 N -0.590 5.590 10 C -0.261 4.261 11 H 0.068 0.932 12 C 0.009 3.991 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.289 1.289 18 C 0.132 3.868 19 C 0.094 3.906 20 C -0.277 4.277 21 C 0.421 3.579 22 O -0.492 6.492 23 C -0.202 4.202 24 C -0.026 4.026 25 C -0.165 4.165 26 C -0.055 4.055 27 C -0.177 4.177 28 C 0.204 3.796 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.101 0.899 36 H 0.256 0.744 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.158 0.842 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 -13.501 12.065 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.170 5.170 3 C 0.070 3.930 4 C 0.331 3.669 5 O -0.420 6.420 6 N -0.298 5.298 7 C -0.062 4.062 8 C 0.035 3.965 9 N -0.313 5.313 10 C -0.390 4.390 11 H 0.085 0.915 12 C -0.191 4.191 13 N -0.545 5.545 14 Si 0.735 3.265 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.216 1.216 18 C 0.005 3.995 19 C -0.030 4.030 20 C -0.304 4.304 21 C 0.308 3.692 22 O -0.374 6.374 23 C -0.207 4.207 24 C -0.045 4.045 25 C -0.184 4.184 26 C -0.074 4.074 27 C -0.197 4.197 28 C 0.101 3.899 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.175 0.825 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.174 -13.382 12.256 18.276 hybrid contribution 0.292 0.561 -0.769 0.995 sum -1.882 -12.821 11.487 17.317 Atomic orbital electron populations 1.22769 0.76162 1.06510 1.04883 1.42920 1.08029 1.02072 1.63957 1.19911 0.92873 0.85899 0.94288 1.18062 0.83546 0.83212 0.82101 1.90696 1.30546 1.80495 1.40271 1.48035 1.36376 1.14590 1.30779 1.23292 0.89631 1.01993 0.91288 1.21232 0.96839 0.87500 0.90897 1.43964 1.36805 1.14418 1.36087 1.19208 1.41432 0.87449 0.90960 0.91480 1.25214 1.00855 0.96586 0.96412 1.69972 1.48987 1.18026 1.17494 0.86176 0.78739 0.81185 0.80375 1.20097 1.21359 1.21551 1.21312 0.91082 0.99820 0.87293 1.22431 0.96647 0.83029 1.00857 1.22424 0.91389 1.01917 1.14697 1.18402 0.88741 0.87433 0.74611 1.90703 1.14523 1.89292 1.42870 1.20399 0.91538 0.97035 1.11679 1.20861 1.00717 0.90414 0.92468 1.20859 0.94180 0.98368 1.05038 1.21129 0.94308 0.97395 0.94557 1.20809 1.00229 0.90270 1.08435 1.17956 0.91011 0.85110 0.95821 0.90594 0.89194 0.86559 0.90753 0.89818 0.95768 0.88146 0.93380 0.95768 0.91067 0.89537 0.91030 0.82466 0.84387 0.85311 0.85093 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 9.66 59.85 0.58 0.97 16 2 N -0.48 -6.27 3.08 -117.79 -0.36 -6.63 16 3 C 0.18 2.71 5.72 -82.59 -0.47 2.24 16 4 C 0.55 8.81 6.60 -12.12 -0.08 8.73 16 5 O -0.54 -9.32 13.91 5.38 0.07 -9.24 16 6 N -0.57 -9.56 2.94 -173.17 -0.51 -10.07 16 7 C 0.06 1.08 5.39 -3.37 -0.02 1.07 16 8 C 0.16 3.57 5.47 -3.37 -0.02 3.55 16 9 N -0.59 -13.71 2.95 -171.76 -0.51 -14.22 16 10 C -0.26 -6.70 9.55 -15.06 -0.14 -6.85 16 11 H 0.07 1.69 7.86 -52.48 -0.41 1.28 16 12 C 0.01 0.23 4.99 -17.43 -0.09 0.14 16 13 N -0.90 -24.86 11.23 55.49 0.62 -24.24 16 14 Si 0.91 20.73 29.57 -169.99 -5.03 15.70 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 C 0.13 2.56 6.67 -3.60 -0.02 2.53 16 19 C 0.09 1.55 6.60 -3.60 -0.02 1.53 16 20 C -0.28 -4.24 7.26 -39.03 -0.28 -4.52 16 21 C 0.42 6.78 6.97 -34.47 -0.24 6.53 16 22 O -0.49 -9.06 17.34 4.98 0.09 -8.98 16 23 C -0.20 -2.81 5.89 -104.80 -0.62 -3.42 16 24 C -0.03 -0.30 9.61 -39.66 -0.38 -0.68 16 25 C -0.17 -1.48 9.97 -39.92 -0.40 -1.88 16 26 C -0.05 -0.45 10.01 -39.53 -0.40 -0.84 16 27 C -0.18 -1.67 9.20 -39.38 -0.36 -2.04 16 28 C 0.20 2.54 6.53 -84.00 -0.55 2.00 16 29 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 30 H 0.09 0.67 5.80 -51.93 -0.30 0.37 16 31 H 0.12 1.42 5.29 -51.93 -0.27 1.14 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.38 4.85 -51.93 -0.25 1.13 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 2.48 6.18 -51.93 -0.32 2.16 16 36 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 37 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 39 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.16 2.34 7.07 -52.49 -0.37 1.97 16 42 H 0.14 1.54 7.78 -52.49 -0.41 1.13 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.14 0.96 6.02 -52.49 -0.32 0.64 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -31.21 359.36 -9.25 -40.46 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.53 Total: 2.75 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -3.52 Total: 9.06 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.75 Total: -55.16 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.16 Total: -18.22 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.21 -9.25 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.136 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds