Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36464 * 119.18068 * 2 1 4 4 C 1.48287 * 118.87489 * 0.02564 * 3 2 1 5 5 O 1.21481 * 120.00133 * 48.62653 * 4 3 2 6 6 N 1.34782 * 120.00124 * 228.63439 * 4 3 2 7 7 C 1.46966 * 120.59071 * 2.72892 * 6 4 3 8 8 C 1.53812 * 108.39821 * 124.76323 * 7 6 4 9 9 N 1.46963 * 108.58071 * 49.63266 * 8 7 6 10 10 C 1.36934 * 120.59477 * 124.62609 * 9 8 7 11 11 H 1.08003 * 120.00283 * 212.57233 * 10 9 8 12 12 C 1.38815 * 120.00008 * 32.56194 * 10 9 8 13 13 N 1.31619 * 119.99668 * 12.70455 * 12 10 9 14 14 Si 1.86803 * 120.00339 * 192.69749 * 12 10 9 15 15 H 1.48501 * 109.46969 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46900 * 120.00200 * 14 12 10 17 17 H 1.48493 * 109.47042 * 240.00435 * 14 12 10 18 18 C 1.46967 * 118.81310 * 304.65418 * 9 8 7 19 19 C 1.46960 * 120.59419 * 183.01379 * 6 4 3 20 20 C 1.35680 * 122.25677 * 179.97438 * 3 2 1 21 21 C 1.42055 * 119.93822 * 0.02762 * 20 3 2 22 22 O 1.21930 * 121.07524 * 179.97438 * 21 20 3 23 23 C 1.47225 * 117.86080 * 359.97438 * 21 20 3 24 24 C 1.39583 * 121.36147 * 180.02562 * 23 21 20 25 25 C 1.36641 * 119.69345 * 179.97438 * 24 23 21 26 26 C 1.38887 * 120.56097 * 0.02562 * 25 24 23 27 27 C 1.37717 * 120.71576 * 0.02562 * 26 25 24 28 28 C 1.37484 * 119.18097 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46944 * 83.59297 * 1 2 3 30 30 H 1.08999 * 109.47021 * 203.58914 * 1 2 3 31 31 H 1.08997 * 109.47045 * 323.59223 * 1 2 3 32 32 H 1.09003 * 109.60975 * 244.54666 * 7 6 4 33 33 H 1.08996 * 109.61476 * 5.05461 * 7 6 4 34 34 H 1.09001 * 109.73542 * 289.84588 * 8 7 6 35 35 H 1.09001 * 109.53149 * 169.30433 * 8 7 6 36 36 H 0.97005 * 119.99940 * 179.97438 * 13 12 10 37 37 H 1.09008 * 109.60267 * 295.47691 * 18 9 8 38 38 H 1.08999 * 109.61167 * 174.97270 * 18 9 8 39 39 H 1.09002 * 109.60944 * 354.94048 * 19 6 4 40 40 H 1.08994 * 109.61016 * 115.45817 * 19 6 4 41 41 H 1.07996 * 120.03165 * 179.97438 * 20 3 2 42 42 H 1.08000 * 120.15148 * 359.95473 * 24 23 21 43 43 H 1.08000 * 119.72157 * 179.71643 * 25 24 23 44 44 H 1.07996 * 119.64562 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.13787 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1304 1.1914 0.0000 4 6 1.3458 2.4498 0.0006 5 8 0.4346 2.5971 0.7904 6 7 1.6434 3.4299 -0.8753 7 6 2.7034 3.2424 -1.8759 8 6 2.1070 3.5028 -3.2696 9 7 1.3816 4.7805 -3.2372 10 6 1.6846 5.7767 -4.1265 11 1 1.5887 6.8113 -3.8317 12 6 2.1154 5.4569 -5.4067 13 7 1.9971 4.2240 -5.8520 14 14 2.8627 6.7763 -6.4977 15 1 2.8831 8.0693 -5.7676 16 1 4.2503 6.3912 -6.8604 17 1 2.0494 6.9171 -7.7321 18 6 0.3255 4.9702 -2.2329 19 6 0.9181 4.7077 -0.8429 20 6 3.4852 1.2643 0.0005 21 6 4.2592 0.0731 0.0005 22 8 5.4778 0.1143 0.0005 23 6 3.5426 -1.2130 0.0005 24 6 4.2302 -2.4277 0.0010 25 6 3.5307 -3.6015 0.0015 26 6 2.1419 -3.5959 0.0009 27 6 1.4432 -2.4091 -0.0006 28 6 2.1353 -1.2003 -0.0005 29 1 -0.3633 0.1147 -1.0213 30 1 -0.3633 -0.9418 0.4112 31 1 -0.3633 0.8271 0.6099 32 1 3.5149 3.9447 -1.6852 33 1 3.0802 2.2210 -1.8226 34 1 1.4197 2.6985 -3.5320 35 1 2.9095 3.5562 -4.0052 36 1 2.2977 4.0005 -6.7468 37 1 -0.4887 4.2703 -2.4217 38 1 -0.0486 5.9927 -2.2840 39 1 0.1155 4.6542 -0.1072 40 1 1.6054 5.5119 -0.5804 41 1 3.9747 2.2269 0.0001 42 1 5.3102 -2.4398 0.0006 43 1 4.0623 -4.5416 -0.0028 44 1 1.6039 -4.5323 0.0009 45 1 0.3632 -2.4156 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 10.799084 kcal Electronic energy + Delta-G solvation = -30182.297611 eV Core-core repulsion = 26165.853550 eV Total energy + Delta-G solvation = -4016.444061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.73857 -41.08445 -39.40414 -38.77913 -38.06768 -35.90916 -34.29207 -33.15234 -32.22398 -31.61892 -31.42809 -28.95720 -27.87425 -26.58041 -25.27764 -24.92454 -24.35792 -22.77452 -22.15793 -20.65358 -19.92284 -19.27706 -18.95741 -18.00423 -17.72816 -17.01211 -16.90303 -16.59812 -16.46055 -16.20889 -15.73810 -15.52178 -15.37037 -15.32754 -15.27696 -15.12306 -15.00170 -14.81740 -14.49510 -13.97375 -13.61476 -13.40009 -13.26270 -13.20954 -12.89558 -12.76549 -12.55162 -12.47882 -12.23957 -12.16086 -12.09118 -11.94741 -11.71255 -11.45850 -10.69558 -10.64901 -10.43048 -10.08332 -10.02848 -8.78371 -8.65406 -7.91602 -5.45109 -0.64898 -0.18384 0.51490 0.92906 1.46508 1.48917 1.50455 1.59186 1.84305 1.98134 2.48448 2.79761 2.87497 3.25783 3.26008 3.46991 3.54186 3.72639 3.86424 4.06957 4.15314 4.16141 4.22648 4.30557 4.32147 4.33012 4.38316 4.49058 4.54762 4.61234 4.64549 4.68472 4.73174 4.77212 4.89770 4.99567 5.01739 5.16497 5.33835 5.37262 5.48491 5.51077 5.53566 5.62668 5.63454 5.94488 6.09720 6.35512 6.64558 6.67541 7.08514 7.74494 8.29171 9.13875 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003279 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.844357 B = 8537.126693 C = 9259.068622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.476 5.476 3 C 0.185 3.815 4 C 0.553 3.447 5 O -0.546 6.546 6 N -0.573 5.573 7 C 0.083 3.917 8 C 0.171 3.829 9 N -0.607 5.607 10 C -0.265 4.265 11 H 0.072 0.928 12 C -0.042 4.042 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.264 1.264 16 H -0.291 1.291 17 H -0.293 1.293 18 C 0.132 3.868 19 C 0.104 3.896 20 C -0.294 4.294 21 C 0.409 3.591 22 O -0.536 6.536 23 C -0.228 4.228 24 C -0.047 4.047 25 C -0.151 4.151 26 C -0.042 4.042 27 C -0.171 4.171 28 C 0.184 3.816 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.001 0.999 35 H 0.070 0.930 36 H 0.251 0.749 37 H 0.016 0.984 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.153 0.847 42 H 0.131 0.869 43 H 0.160 0.840 44 H 0.175 0.825 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 -15.411 13.260 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.166 5.166 3 C 0.072 3.928 4 C 0.339 3.661 5 O -0.426 6.426 6 N -0.303 5.303 7 C -0.041 4.041 8 C 0.044 3.956 9 N -0.331 5.331 10 C -0.395 4.395 11 H 0.089 0.911 12 C -0.238 4.238 13 N -0.579 5.579 14 Si 0.795 3.205 15 H -0.189 1.189 16 H -0.218 1.218 17 H -0.220 1.220 18 C 0.006 3.994 19 C -0.019 4.019 20 C -0.322 4.322 21 C 0.301 3.699 22 O -0.422 6.422 23 C -0.232 4.232 24 C -0.066 4.066 25 C -0.170 4.170 26 C -0.061 4.061 27 C -0.191 4.191 28 C 0.082 3.918 29 H 0.096 0.904 30 H 0.146 0.854 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.019 0.981 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.171 0.829 42 H 0.149 0.851 43 H 0.178 0.822 44 H 0.192 0.808 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.789 -15.309 13.491 20.755 hybrid contribution 0.637 1.002 -1.081 1.606 sum -3.152 -14.307 12.411 19.200 Atomic orbital electron populations 1.22933 0.74587 1.08017 1.05031 1.43156 1.09004 1.01721 1.62675 1.19760 0.92534 0.86328 0.94213 1.18124 0.83148 0.83238 0.81563 1.90697 1.30815 1.80680 1.40418 1.47995 1.36346 1.15035 1.30941 1.22932 0.89488 1.02735 0.88968 1.20969 0.95361 0.86593 0.92640 1.44200 1.38190 1.14147 1.36547 1.19528 1.40438 0.88235 0.91320 0.91083 1.25909 1.01859 0.98285 0.97784 1.70119 1.50469 1.19740 1.17540 0.85216 0.77376 0.79404 0.78482 1.18867 1.21807 1.22013 1.21409 0.90074 1.00187 0.87719 1.22310 0.97181 0.83231 0.99174 1.22346 0.91708 1.01775 1.16343 1.18757 0.88442 0.88826 0.73924 1.90662 1.15903 1.89921 1.45757 1.20427 0.92499 0.96622 1.13606 1.20986 1.00796 0.90906 0.93901 1.21281 0.94981 0.98383 1.02326 1.21674 0.93977 0.98624 0.91809 1.21249 1.01796 0.89227 1.06800 1.18256 0.90650 0.85837 0.97061 0.90360 0.85410 0.88053 0.90310 0.88818 0.98081 0.91216 0.93944 0.96601 0.90138 0.87967 0.90062 0.82939 0.85076 0.82198 0.80762 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.66 127.77 1.23 1.87 16 2 N -0.48 -11.84 3.08 -526.59 -1.62 -13.46 16 3 C 0.19 5.51 5.72 40.51 0.23 5.74 16 4 C 0.55 17.55 6.60 86.92 0.57 18.12 16 5 O -0.55 -18.14 13.91 -3.66 -0.05 -18.20 16 6 N -0.57 -19.10 2.94 -820.09 -2.41 -21.51 16 7 C 0.08 2.97 5.39 86.56 0.47 3.44 16 8 C 0.17 7.79 5.47 86.57 0.47 8.27 16 9 N -0.61 -28.59 2.95 -697.33 -2.06 -30.64 16 10 C -0.27 -13.72 9.55 84.03 0.80 -12.91 16 11 H 0.07 3.56 7.86 -2.91 -0.02 3.53 16 12 C -0.04 -2.25 4.99 84.86 0.42 -1.83 16 13 N -0.93 -53.04 11.23 21.65 0.24 -52.80 16 14 Si 0.97 43.18 29.57 68.60 2.03 45.21 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 18 C 0.13 5.06 6.67 86.41 0.58 5.64 16 19 C 0.10 3.33 6.60 86.42 0.57 3.90 16 20 C -0.29 -9.35 7.26 22.62 0.16 -9.19 16 21 C 0.41 13.89 6.97 25.58 0.18 14.07 16 22 O -0.54 -21.20 17.34 -5.09 -0.09 -21.29 16 23 C -0.23 -6.32 5.89 -19.98 -0.12 -6.44 16 24 C -0.05 -1.07 9.61 22.22 0.21 -0.86 16 25 C -0.15 -2.19 9.97 22.05 0.22 -1.97 16 26 C -0.04 -0.48 10.01 22.30 0.22 -0.25 16 27 C -0.17 -2.53 9.20 22.40 0.21 -2.32 16 28 C 0.18 4.28 6.53 39.12 0.26 4.53 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.13 1.36 5.80 -2.39 -0.01 1.35 16 31 H 0.10 2.28 5.29 -2.39 -0.01 2.27 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.09 3.21 4.85 -2.39 -0.01 3.20 16 34 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.07 3.61 6.18 -2.39 -0.01 3.60 16 36 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 37 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16 39 H 0.10 3.00 6.99 -2.39 -0.02 2.98 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.15 4.80 7.07 -2.91 -0.02 4.78 16 42 H 0.13 3.03 7.78 -2.91 -0.02 3.01 16 43 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.17 1.40 6.02 -2.91 -0.02 1.38 16 Total: -1.00 -70.74 359.36 3.77 -66.97 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.03 Total: 15.90 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 6.70 Total: 29.81 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.84 Total: -118.40 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.14 Total: -39.48 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -70.74 3.77 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.765 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds