Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47088 * 2 1 4 4 C 1.42898 * 114.00038 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47335 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46808 * 181.18716 * 5 4 3 7 7 N 1.46494 * 109.46810 * 61.18415 * 5 4 3 8 8 S 1.65606 * 119.99875 * 142.78702 * 7 5 4 9 9 O 1.42106 * 106.39861 * 311.26914 * 8 7 5 10 10 O 1.42101 * 106.40425 * 178.35141 * 8 7 5 11 11 C 1.76199 * 107.21710 * 64.80828 * 8 7 5 12 12 C 1.37641 * 120.12880 * 245.61102 * 11 8 7 13 13 C 1.38609 * 120.24836 * 180.32196 * 12 11 8 14 14 C 1.38657 * 120.50145 * 359.67832 * 13 12 11 15 15 C 1.37595 * 120.24652 * 359.97438 * 14 13 12 16 16 C 1.40698 * 120.12692 * 65.31307 * 11 8 7 17 17 C 1.41390 * 120.24388 * 359.97221 * 16 11 8 18 18 H 1.08004 * 120.00070 * 29.91757 * 17 16 11 19 19 C 1.39944 * 119.99972 * 209.91815 * 17 16 11 20 20 N 1.30828 * 120.00209 * 192.63813 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 12.63802 * 19 17 16 22 22 H 1.48502 * 109.46854 * 266.80899 * 21 19 17 23 23 H 1.48502 * 109.46975 * 26.80670 * 21 19 17 24 24 H 1.48501 * 109.47093 * 146.80709 * 21 19 17 25 25 C 1.53000 * 109.46722 * 301.18470 * 5 4 3 26 26 C 1.52993 * 109.47422 * 303.23759 * 25 5 4 27 27 C 1.52998 * 109.47240 * 63.24302 * 25 5 4 28 28 H 1.08997 * 109.47682 * 299.99985 * 1 2 3 29 29 H 1.09003 * 109.46992 * 60.00140 * 1 2 3 30 30 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47165 * 239.99998 * 2 1 3 32 32 H 1.08998 * 109.46853 * 120.00595 * 2 1 3 33 33 H 1.09004 * 109.47307 * 59.99853 * 4 3 2 34 34 H 1.09003 * 109.47102 * 300.00487 * 4 3 2 35 35 H 0.97003 * 120.00336 * 322.78361 * 7 5 4 36 36 H 1.08005 * 119.87305 * 0.02562 * 12 11 8 37 37 H 1.08004 * 119.75073 * 179.69373 * 13 12 11 38 38 H 1.08000 * 119.87546 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.12725 * 180.02562 * 15 14 13 40 40 H 0.97001 * 120.00211 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.46514 * 183.23924 * 25 5 4 42 42 H 1.09002 * 109.47577 * 180.02562 * 26 25 5 43 43 H 1.09003 * 109.47196 * 300.00271 * 26 25 5 44 44 H 1.09001 * 109.47141 * 60.00549 * 26 25 5 45 45 H 1.09000 * 109.47349 * 46.36419 * 27 25 5 46 46 H 1.08994 * 109.47235 * 166.36963 * 27 25 5 47 47 H 1.09004 * 109.46819 * 286.36747 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 1 4.9118 3.0244 -0.0197 7 7 3.3076 3.5814 1.2113 8 16 4.2042 4.7420 1.9805 9 8 5.5131 4.2079 2.1245 10 8 3.4225 5.1903 3.0793 11 6 4.3433 6.1094 0.8781 12 6 5.5713 6.4619 0.3660 13 6 5.6846 7.5413 -0.4962 14 6 4.5642 8.2736 -0.8581 15 6 3.3255 7.9348 -0.3640 16 6 3.1985 6.8414 0.5128 17 6 1.9308 6.4843 1.0271 18 1 1.8531 6.0258 2.0019 19 6 0.7767 6.7248 0.2730 20 7 -0.4020 6.6293 0.8325 21 14 0.9192 7.1824 -1.5325 22 1 0.9345 8.6611 -1.6686 23 1 2.1771 6.6212 -2.0876 24 1 -0.2406 6.6287 -2.2765 25 6 3.2357 3.6240 -1.2329 26 6 3.7126 2.9017 -2.4945 27 6 1.7081 3.5739 -1.1631 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9764 -0.8892 34 1 3.8332 0.9766 0.8908 35 1 2.4396 3.3275 1.5621 36 1 6.4507 5.8983 0.6409 37 1 6.6529 7.8139 -0.8893 38 1 4.6640 9.1124 -1.5309 39 1 2.4540 8.5063 -0.6475 40 1 -1.2020 6.7957 0.3097 41 1 3.5641 4.6629 -1.2630 42 1 3.2928 3.3904 -3.3737 43 1 4.8009 2.9374 -2.5442 44 1 3.3841 1.8628 -2.4644 45 1 1.3802 3.8659 -0.1655 46 1 1.2881 4.2596 -1.8989 47 1 1.3678 2.5603 -1.3753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601400915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = -112.062437 kcal Electronic energy + Delta-G solvation = -30636.661848 eV Core-core repulsion = 26718.041311 eV Total energy + Delta-G solvation = -3918.620536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -38.86879 -37.86556 -36.37985 -36.06952 -34.89262 -33.82342 -32.32466 -31.19011 -30.69176 -30.10073 -27.80146 -26.39143 -25.37652 -23.21615 -22.67201 -22.05663 -21.15348 -19.26926 -18.64621 -17.71372 -17.13742 -16.71837 -16.42227 -16.32319 -15.40935 -15.33912 -14.55374 -14.27951 -14.16374 -14.01403 -13.66314 -13.51424 -13.21865 -12.94876 -12.79092 -12.54336 -12.43648 -12.18708 -11.89732 -11.82965 -11.68593 -11.32968 -11.31943 -11.24972 -11.22144 -11.16821 -10.95752 -10.92960 -10.72174 -10.57281 -10.35077 -10.27378 -9.94952 -9.91651 -9.46140 -9.32995 -9.25145 -8.70242 -8.18535 -7.80880 -7.16021 -4.84439 1.52173 2.10323 2.55166 2.96337 3.06125 3.15420 3.71936 3.78284 3.96714 4.27929 4.69194 5.00310 5.04413 5.09769 5.18961 5.25185 5.35767 5.40803 5.48992 5.54715 5.61376 5.64234 5.68374 5.79318 5.85579 5.91997 5.93087 6.05742 6.14546 6.20288 6.24847 6.34751 6.40965 6.45308 6.58570 6.68434 6.72038 6.97467 6.99434 7.10957 7.18301 7.26846 7.34285 7.44993 7.58000 7.76043 7.86229 8.20397 8.34476 8.56564 9.81816 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.006456 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.499306 B = 4335.773666 C = 5230.433512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.057 3.943 5 C 0.168 3.832 6 H 0.097 0.903 7 N -1.102 6.102 8 S 2.704 3.296 9 O -0.999 6.999 10 O -0.970 6.970 11 C -0.769 4.769 12 C 0.018 3.982 13 C -0.260 4.260 14 C -0.044 4.044 15 C -0.236 4.236 16 C 0.168 3.832 17 C -0.446 4.446 18 H 0.128 0.872 19 C 0.094 3.906 20 N -0.777 5.777 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.235 1.235 24 H -0.288 1.288 25 C -0.113 4.113 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.420 0.580 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.290 0.710 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.031 0.969 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -10.350 -6.489 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.285 6.285 4 C -0.021 4.021 5 C 0.060 3.940 6 H 0.115 0.885 7 N -0.859 5.859 8 S 2.800 3.200 9 O -0.990 6.990 10 O -0.960 6.960 11 C -0.864 4.864 12 C -0.002 4.002 13 C -0.281 4.281 14 C -0.062 4.062 15 C -0.256 4.256 16 C 0.162 3.838 17 C -0.473 4.473 18 H 0.145 0.855 19 C -0.129 4.129 20 N -0.399 5.399 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.158 1.158 24 H -0.216 1.216 25 C -0.133 4.133 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.392 -10.280 -5.614 11.955 hybrid contribution -0.481 0.590 -1.427 1.617 sum 1.912 -9.690 -7.041 12.130 Atomic orbital electron populations 1.21730 0.93963 1.01688 1.03433 1.22424 0.95547 0.84898 0.99530 1.88164 1.20486 1.24814 1.95002 1.22828 0.82147 0.96761 1.00369 1.20761 0.97839 0.90291 0.85136 0.88509 1.55396 1.34722 1.56332 1.39474 1.00981 0.72102 0.73219 0.73697 1.93449 1.39492 1.79507 1.86510 1.93524 1.70245 1.81204 1.51022 1.29816 1.00273 1.24538 1.31740 1.20373 0.94748 0.93897 0.91205 1.20457 0.97240 1.02260 1.08123 1.20796 0.93253 0.96552 0.95628 1.21179 0.96472 1.01129 1.06802 1.17023 0.91368 0.88017 0.87344 1.20342 0.88591 1.32956 1.05368 0.85484 1.26178 0.94524 0.90984 1.01252 1.69654 0.99369 1.32088 1.38741 0.86489 0.79521 0.78935 0.81835 1.20053 1.15782 1.21570 1.21579 0.97848 1.00752 0.93123 1.21889 1.00481 1.00152 0.97789 1.21902 0.93807 1.01206 1.02718 0.91629 0.91887 0.91711 0.93911 0.93807 0.92225 0.92932 0.74484 0.87012 0.88282 0.88495 0.87918 0.89875 0.89675 0.92885 0.93077 0.92779 0.90791 0.94973 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.05 0.55 6.66 37.16 0.25 0.80 16 3 O -0.37 -4.85 6.18 -35.23 -0.22 -5.06 16 4 C 0.06 0.72 5.25 37.16 0.20 0.92 16 5 C 0.17 2.59 2.70 -67.93 -0.18 2.40 16 6 H 0.10 1.44 7.50 -51.93 -0.39 1.05 16 7 N -1.10 -19.78 4.59 -4.89 -0.02 -19.81 16 8 S 2.70 57.66 5.06 -107.50 -0.54 57.11 16 9 O -1.00 -21.78 16.32 -57.17 -0.93 -22.71 16 10 O -0.97 -23.86 15.66 -57.17 -0.90 -24.75 16 11 C -0.77 -17.25 5.09 -38.87 -0.20 -17.45 16 12 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 13 C -0.26 -5.20 10.05 -39.29 -0.39 -5.60 16 14 C -0.04 -0.90 10.02 -39.66 -0.40 -1.30 16 15 C -0.24 -5.42 6.98 -38.87 -0.27 -5.69 16 16 C 0.17 4.01 4.93 -106.83 -0.53 3.49 16 17 C -0.45 -11.18 8.77 -37.74 -0.33 -11.51 16 18 H 0.13 3.45 5.63 -52.48 -0.30 3.15 16 19 C 0.09 2.27 5.47 -17.34 -0.09 2.18 16 20 N -0.78 -19.14 13.93 55.55 0.77 -18.37 16 21 Si 0.91 19.48 22.73 -169.99 -3.86 15.61 16 22 H -0.27 -5.84 6.69 56.52 0.38 -5.46 16 23 H -0.23 -5.04 6.62 56.52 0.37 -4.67 16 24 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 25 C -0.11 -1.82 2.96 -90.62 -0.27 -2.09 16 26 C -0.15 -1.90 8.71 37.15 0.32 -1.58 16 27 C -0.14 -2.39 7.79 37.16 0.29 -2.10 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.42 7.39 7.79 -34.47 -0.27 7.13 16 36 H 0.11 2.14 7.32 -52.48 -0.38 1.75 16 37 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 39 H 0.10 2.34 4.32 -52.48 -0.23 2.11 16 40 H 0.29 6.47 8.30 -40.82 -0.34 6.14 16 41 H 0.08 1.61 7.04 -51.93 -0.37 1.24 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.62 6.40 -51.93 -0.33 0.29 16 45 H 0.07 1.42 6.69 -51.93 -0.35 1.07 16 46 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 47 H 0.07 1.07 5.84 -51.93 -0.30 0.77 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -29.02 371.17 -8.72 -37.74 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.00 Total: 13.31 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: -1.61 Total: -38.66 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.75 Total: -38.18 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -2.05 Total: -52.53 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -3.86 Total: 15.61 kcal Atomic # 16 Polarization: 57.66 SS G_CDS: -0.54 Total: 57.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.02 -8.72 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601400915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.327 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds