Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47088 * 2 1 4 4 C 1.42898 * 114.00038 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47335 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46808 * 181.18716 * 5 4 3 7 7 N 1.46494 * 109.46810 * 61.18415 * 5 4 3 8 8 S 1.65606 * 119.99875 * 142.78702 * 7 5 4 9 9 O 1.42106 * 106.39861 * 311.26914 * 8 7 5 10 10 O 1.42101 * 106.40425 * 178.35141 * 8 7 5 11 11 C 1.76199 * 107.21710 * 64.80828 * 8 7 5 12 12 C 1.37641 * 120.12880 * 245.61102 * 11 8 7 13 13 C 1.38609 * 120.24836 * 180.32196 * 12 11 8 14 14 C 1.38657 * 120.50145 * 359.67832 * 13 12 11 15 15 C 1.37595 * 120.24652 * 359.97438 * 14 13 12 16 16 C 1.40698 * 120.12692 * 65.31307 * 11 8 7 17 17 C 1.41390 * 120.24388 * 359.97221 * 16 11 8 18 18 H 1.08004 * 120.00070 * 29.91757 * 17 16 11 19 19 C 1.39944 * 119.99972 * 209.91815 * 17 16 11 20 20 N 1.30828 * 120.00209 * 192.63813 * 19 17 16 21 21 Si 1.86801 * 120.00142 * 12.63802 * 19 17 16 22 22 H 1.48502 * 109.46854 * 266.80899 * 21 19 17 23 23 H 1.48502 * 109.46975 * 26.80670 * 21 19 17 24 24 H 1.48501 * 109.47093 * 146.80709 * 21 19 17 25 25 C 1.53000 * 109.46722 * 301.18470 * 5 4 3 26 26 C 1.52993 * 109.47422 * 303.23759 * 25 5 4 27 27 C 1.52998 * 109.47240 * 63.24302 * 25 5 4 28 28 H 1.08997 * 109.47682 * 299.99985 * 1 2 3 29 29 H 1.09003 * 109.46992 * 60.00140 * 1 2 3 30 30 H 1.09005 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47165 * 239.99998 * 2 1 3 32 32 H 1.08998 * 109.46853 * 120.00595 * 2 1 3 33 33 H 1.09004 * 109.47307 * 59.99853 * 4 3 2 34 34 H 1.09003 * 109.47102 * 300.00487 * 4 3 2 35 35 H 0.97003 * 120.00336 * 322.78361 * 7 5 4 36 36 H 1.08005 * 119.87305 * 0.02562 * 12 11 8 37 37 H 1.08004 * 119.75073 * 179.69373 * 13 12 11 38 38 H 1.08000 * 119.87546 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.12725 * 180.02562 * 15 14 13 40 40 H 0.97001 * 120.00211 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.46514 * 183.23924 * 25 5 4 42 42 H 1.09002 * 109.47577 * 180.02562 * 26 25 5 43 43 H 1.09003 * 109.47196 * 300.00271 * 26 25 5 44 44 H 1.09001 * 109.47141 * 60.00549 * 26 25 5 45 45 H 1.09000 * 109.47349 * 46.36419 * 27 25 5 46 46 H 1.08994 * 109.47235 * 166.36963 * 27 25 5 47 47 H 1.09004 * 109.46819 * 286.36747 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 1 4.9118 3.0244 -0.0197 7 7 3.3076 3.5814 1.2113 8 16 4.2042 4.7420 1.9805 9 8 5.5131 4.2079 2.1245 10 8 3.4225 5.1903 3.0793 11 6 4.3433 6.1094 0.8781 12 6 5.5713 6.4619 0.3660 13 6 5.6846 7.5413 -0.4962 14 6 4.5642 8.2736 -0.8581 15 6 3.3255 7.9348 -0.3640 16 6 3.1985 6.8414 0.5128 17 6 1.9308 6.4843 1.0271 18 1 1.8531 6.0258 2.0019 19 6 0.7767 6.7248 0.2730 20 7 -0.4020 6.6293 0.8325 21 14 0.9192 7.1824 -1.5325 22 1 0.9345 8.6611 -1.6686 23 1 2.1771 6.6212 -2.0876 24 1 -0.2406 6.6287 -2.2765 25 6 3.2357 3.6240 -1.2329 26 6 3.7126 2.9017 -2.4945 27 6 1.7081 3.5739 -1.1631 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9764 -0.8892 34 1 3.8332 0.9766 0.8908 35 1 2.4396 3.3275 1.5621 36 1 6.4507 5.8983 0.6409 37 1 6.6529 7.8139 -0.8893 38 1 4.6640 9.1124 -1.5309 39 1 2.4540 8.5063 -0.6475 40 1 -1.2020 6.7957 0.3097 41 1 3.5641 4.6629 -1.2630 42 1 3.2928 3.3904 -3.3737 43 1 4.8009 2.9374 -2.5442 44 1 3.3841 1.8628 -2.4644 45 1 1.3802 3.8659 -0.1655 46 1 1.2881 4.2596 -1.8989 47 1 1.3678 2.5603 -1.3753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601400915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = -131.521638 kcal Electronic energy + Delta-G solvation = -30637.505662 eV Core-core repulsion = 26718.041311 eV Total energy + Delta-G solvation = -3919.464350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.99762 -39.54594 -38.08255 -37.25919 -36.69846 -35.60693 -33.66770 -32.46715 -32.03823 -31.79588 -28.97537 -27.55762 -27.14905 -24.36448 -23.75589 -23.51037 -22.89709 -20.59685 -20.16806 -19.51634 -18.71997 -18.20788 -17.66714 -17.47524 -17.08484 -16.63407 -16.05622 -15.86287 -15.54318 -15.29904 -15.21109 -15.17729 -14.62191 -14.34600 -14.05452 -13.93481 -13.57626 -13.53437 -13.31996 -13.09288 -13.08542 -12.97558 -12.91348 -12.84126 -12.60879 -12.49197 -12.37142 -12.29880 -12.10476 -12.06504 -11.79674 -11.68757 -11.55770 -11.19981 -11.15316 -11.00103 -10.26550 -10.12627 -9.85044 -9.55103 -8.96730 -6.69396 -0.15355 0.38043 0.81931 1.21038 1.33586 1.42541 2.03366 2.31156 2.53537 2.87840 2.96732 3.38601 3.78070 3.88280 3.99580 4.21538 4.26912 4.27663 4.32079 4.39599 4.49143 4.53022 4.56778 4.62106 4.62964 4.65721 4.71363 4.89895 4.93253 4.94999 5.08469 5.11369 5.14132 5.24182 5.26973 5.32668 5.35077 5.41020 5.43749 5.58929 5.71119 5.72796 5.82177 5.86713 6.11647 6.26759 6.35389 6.45460 6.56359 6.73274 8.07183 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010447 B = 0.006456 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.499306 B = 4335.773666 C = 5230.433512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.389 6.389 4 C 0.061 3.939 5 C 0.159 3.841 6 H 0.105 0.895 7 N -1.094 6.094 8 S 2.716 3.284 9 O -1.004 7.004 10 O -1.010 7.010 11 C -0.776 4.776 12 C 0.006 3.994 13 C -0.247 4.247 14 C -0.040 4.040 15 C -0.263 4.263 16 C 0.159 3.841 17 C -0.472 4.472 18 H 0.094 0.906 19 C 0.071 3.929 20 N -0.817 5.817 21 Si 0.946 3.054 22 H -0.269 1.269 23 H -0.235 1.235 24 H -0.281 1.281 25 C -0.112 4.112 26 C -0.140 4.140 27 C -0.132 4.132 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.420 0.580 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.297 0.703 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.017 0.983 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 -11.416 -8.934 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.309 6.309 4 C -0.017 4.017 5 C 0.052 3.948 6 H 0.123 0.877 7 N -0.853 5.853 8 S 2.812 3.188 9 O -0.994 6.994 10 O -1.000 7.000 11 C -0.870 4.870 12 C -0.014 4.014 13 C -0.267 4.267 14 C -0.058 4.058 15 C -0.282 4.282 16 C 0.154 3.846 17 C -0.500 4.500 18 H 0.112 0.888 19 C -0.148 4.148 20 N -0.441 5.441 21 Si 0.770 3.230 22 H -0.196 1.196 23 H -0.158 1.158 24 H -0.208 1.208 25 C -0.132 4.132 26 C -0.198 4.198 27 C -0.189 4.189 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.256 0.744 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.585 -11.343 -8.059 14.650 hybrid contribution -0.983 0.894 -0.658 1.483 sum 3.602 -10.448 -8.717 14.076 Atomic orbital electron populations 1.21750 0.94001 1.02838 1.02155 1.22599 0.95543 0.83751 1.00888 1.88120 1.20809 1.26753 1.95230 1.22816 0.82196 0.94515 1.02203 1.21068 0.98207 0.92079 0.83482 0.87707 1.55145 1.34422 1.55348 1.40382 1.00448 0.71847 0.73287 0.73220 1.93431 1.39766 1.79521 1.86672 1.93472 1.71125 1.82140 1.53310 1.30034 1.00704 1.24911 1.31312 1.20731 0.94650 0.94633 0.91382 1.20955 0.98735 1.00675 1.06304 1.21236 0.92277 0.97186 0.95142 1.21314 0.97774 1.01318 1.07809 1.17145 0.91263 0.88469 0.87705 1.20140 0.89937 1.35044 1.04859 0.88776 1.26624 0.93984 0.90575 1.03660 1.69676 1.00027 1.34308 1.40049 0.85864 0.79581 0.78832 0.78677 1.19552 1.15794 1.20770 1.21529 0.96898 0.99619 0.95164 1.21855 1.01417 1.00791 0.95707 1.21828 0.94847 1.01671 1.00537 0.93396 0.92662 0.89358 0.91847 0.93003 0.89203 0.92152 0.74440 0.85106 0.84446 0.84876 0.88206 0.89179 0.92763 0.93027 0.91571 0.90734 0.93586 0.96397 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.28 71.98 0.74 -2.08 16 2 C 0.05 0.91 6.66 71.98 0.48 1.39 16 3 O -0.39 -9.76 6.18 -148.98 -0.92 -10.68 16 4 C 0.06 1.39 5.25 71.98 0.38 1.77 16 5 C 0.16 4.70 2.70 44.99 0.12 4.82 16 6 H 0.11 2.92 7.50 -2.39 -0.02 2.90 16 7 N -1.09 -39.94 4.59 -169.39 -0.78 -40.72 16 8 S 2.72 117.90 5.06 -56.49 -0.29 117.61 16 9 O -1.00 -43.16 16.32 -128.00 -2.09 -45.25 16 10 O -1.01 -52.15 15.66 -128.00 -2.00 -54.15 16 11 C -0.78 -34.73 5.09 22.73 0.12 -34.62 16 12 C 0.01 0.23 9.53 22.22 0.21 0.44 16 13 C -0.25 -8.93 10.05 22.46 0.23 -8.71 16 14 C -0.04 -1.53 10.02 22.22 0.22 -1.31 16 15 C -0.26 -11.84 6.98 22.73 0.16 -11.69 16 16 C 0.16 7.72 4.93 -21.29 -0.11 7.62 16 17 C -0.47 -24.84 8.77 23.46 0.21 -24.64 16 18 H 0.09 5.50 5.63 -2.91 -0.02 5.48 16 19 C 0.07 3.58 5.47 85.26 0.47 4.05 16 20 N -0.82 -42.33 13.93 21.83 0.30 -42.02 16 21 Si 0.95 40.57 22.73 68.60 1.56 42.13 16 22 H -0.27 -11.20 6.69 99.48 0.67 -10.53 16 23 H -0.23 -9.95 6.62 99.48 0.66 -9.29 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 25 C -0.11 -3.50 2.96 -10.80 -0.03 -3.53 16 26 C -0.14 -3.26 8.71 71.98 0.63 -2.64 16 27 C -0.13 -4.54 7.79 71.98 0.56 -3.98 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.53 6.44 -2.38 -0.02 1.52 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.42 15.53 7.79 -96.74 -0.75 14.78 16 36 H 0.13 4.64 7.32 -2.91 -0.02 4.62 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.10 4.50 4.32 -2.91 -0.01 4.49 16 40 H 0.30 13.88 8.30 -92.71 -0.77 13.11 16 41 H 0.05 2.03 7.04 -2.39 -0.02 2.01 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.43 6.40 -2.39 -0.02 1.41 16 45 H 0.05 1.83 6.69 -2.39 -0.02 1.81 16 46 H 0.02 0.63 6.57 -2.39 -0.02 0.61 16 47 H 0.09 2.61 5.84 -2.38 -0.01 2.60 16 Total: -1.00 -64.83 371.17 0.31 -64.52 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.15 Total: 41.65 kcal Atomic # 6 Polarization: -77.47 SS G_CDS: 4.38 Total: -73.10 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -0.47 Total: -82.74 kcal Atomic # 8 Polarization: -105.06 SS G_CDS: -5.01 Total: -110.08 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.56 Total: 42.13 kcal Atomic # 16 Polarization: 117.90 SS G_CDS: -0.29 Total: 117.61 kcal Total: -64.83 0.31 -64.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601400915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.002 kcal (2) G-P(sol) polarization free energy of solvation -64.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds