Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99590 * 2 1 4 4 C 1.50698 * 109.47009 * 274.46477 * 3 2 1 5 5 O 1.21284 * 120.00295 * 5.05110 * 4 3 2 6 6 N 1.34778 * 120.00005 * 185.04507 * 4 3 2 7 7 C 1.46502 * 120.00312 * 180.02562 * 6 4 3 8 8 C 1.52999 * 117.49775 * 223.74804 * 7 6 4 9 9 C 1.52996 * 117.50056 * 155.08446 * 7 6 4 10 10 C 1.34781 * 120.00240 * 179.97438 * 2 1 3 11 11 O 1.21662 * 119.99785 * 188.19501 * 10 2 1 12 12 C 1.46891 * 119.99774 * 8.20310 * 10 2 1 13 13 C 1.36125 * 125.43541 * 347.97489 * 12 10 2 14 14 C 1.41700 * 107.74546 * 180.02562 * 13 12 10 15 15 C 1.40023 * 133.34693 * 179.97438 * 14 13 12 16 16 C 1.36582 * 119.83171 * 180.02562 * 15 14 13 17 17 C 1.38851 * 120.59484 * 359.97438 * 16 15 14 18 18 C 1.37841 * 120.63680 * 0.28832 * 17 16 15 19 19 C 1.39085 * 119.81568 * 359.46816 * 18 17 16 20 20 N 1.37835 * 133.16760 * 180.19389 * 19 18 17 21 21 C 1.36882 * 125.62097 * 0.26219 * 20 19 18 22 22 H 1.08004 * 120.00191 * 131.47120 * 21 20 19 23 23 C 1.39017 * 120.00362 * 311.47583 * 21 20 19 24 24 N 1.31347 * 120.00205 * 179.75152 * 23 21 20 25 25 Si 1.86794 * 119.99544 * 359.75052 * 23 21 20 26 26 H 1.48505 * 109.46988 * 96.38238 * 25 23 21 27 27 H 1.48503 * 109.47081 * 216.37917 * 25 23 21 28 28 H 1.48495 * 109.47444 * 336.37973 * 25 23 21 29 29 H 1.08996 * 109.46760 * 247.73647 * 1 2 3 30 30 H 1.09001 * 109.47327 * 7.73804 * 1 2 3 31 31 H 1.09003 * 109.47034 * 127.73805 * 1 2 3 32 32 H 1.09001 * 109.47447 * 34.47316 * 3 2 1 33 33 H 1.09006 * 109.46557 * 154.46988 * 3 2 1 34 34 H 0.96996 * 120.00082 * 0.02562 * 6 4 3 35 35 H 1.09000 * 115.54364 * 9.41253 * 7 6 4 36 36 H 1.08996 * 117.49834 * 359.97438 * 8 7 6 37 37 H 1.09002 * 117.49825 * 145.01714 * 8 7 6 38 38 H 1.08997 * 117.49481 * 214.97414 * 9 7 6 39 39 H 1.08997 * 117.49848 * 359.97438 * 9 7 6 40 40 H 1.08002 * 126.12471 * 0.07073 * 13 12 10 41 41 H 1.08003 * 120.08082 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.70049 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.67816 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.09653 * 179.69892 * 18 17 16 45 45 H 0.97003 * 119.99937 * 185.00457 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3528 1.7591 -1.4165 5 8 1.8188 1.1618 -2.3270 6 7 3.0850 2.8615 -1.6715 7 6 3.2356 3.3385 -3.0485 8 6 4.6314 3.7779 -3.4952 9 6 3.5405 4.8239 -3.2522 10 6 2.1390 -1.1672 0.0005 11 8 3.3463 -1.1724 0.1507 12 6 1.4158 -2.4329 -0.1804 13 6 0.0641 -2.5842 -0.1266 14 6 -0.2266 -3.9528 -0.3509 15 6 -1.4185 -4.6853 -0.4088 16 6 -1.3791 -6.0294 -0.6481 17 6 -0.1661 -6.6785 -0.8356 18 6 1.0208 -5.9799 -0.7779 19 6 1.0057 -4.6095 -0.5406 20 7 1.9992 -3.6601 -0.4329 21 6 3.3423 -3.8945 -0.5543 22 1 3.9449 -3.2649 -1.1923 23 6 3.9309 -4.9429 0.1436 24 7 5.2189 -5.1707 0.0233 25 14 2.8901 -6.0275 1.2523 26 1 2.4895 -7.2515 0.5129 27 1 3.6777 -6.4095 2.4520 28 1 1.6757 -5.2840 1.6736 29 1 -0.3633 -0.3893 0.9510 30 1 -0.3634 1.0183 -0.1384 31 1 -0.3633 -0.6290 -0.8127 32 1 1.6454 2.0070 0.5817 33 1 3.1822 1.1197 0.4429 34 1 3.5123 3.3391 -0.9434 35 1 2.6015 2.8489 -3.7876 36 1 5.4375 3.7124 -2.7645 37 1 4.9154 3.5777 -4.5284 38 1 3.1073 5.3113 -4.1256 39 1 3.6286 5.4463 -2.3618 40 1 -0.6576 -1.8012 0.0540 41 1 -2.3666 -4.1888 -0.2636 42 1 -2.2997 -6.5922 -0.6926 43 1 -0.1521 -7.7418 -1.0243 44 1 1.9596 -6.4944 -0.9203 45 1 5.6166 -5.9447 0.4518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609160286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 61.546198 kcal Electronic energy + Delta-G solvation = -29698.832684 eV Core-core repulsion = 25684.589183 eV Total energy + Delta-G solvation = -4014.243501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92386 -39.98968 -38.64020 -37.13192 -36.10109 -35.15127 -33.41392 -32.97819 -31.46325 -29.59465 -29.22810 -27.61710 -26.41074 -24.74480 -23.18136 -22.65740 -22.02185 -21.13047 -20.71932 -20.04135 -19.13913 -17.95753 -17.43662 -16.76489 -16.42547 -16.04582 -15.60040 -15.27037 -15.01064 -14.89054 -14.61382 -14.29553 -14.03764 -13.80531 -13.31358 -13.26930 -13.21428 -12.90001 -12.87624 -12.56934 -12.52991 -12.21939 -12.06289 -11.85485 -11.44948 -11.33353 -11.16258 -10.85049 -10.77450 -10.63642 -10.51558 -10.08788 -10.04886 -9.81495 -9.40035 -9.12353 -8.90842 -8.63192 -8.40058 -7.28670 -6.93500 -6.64347 -4.45287 1.58631 2.49796 2.54120 2.66933 2.89584 3.09232 3.21301 3.28213 3.32845 3.68079 3.99954 4.10549 4.36787 4.52734 4.65177 4.68668 4.70437 4.74281 4.85012 4.95486 5.23948 5.25727 5.33127 5.47991 5.55878 5.63025 5.69632 5.70107 5.71607 5.79903 5.86974 5.96456 6.11869 6.20868 6.34292 6.42269 6.53801 6.65462 6.68936 6.81558 7.20665 7.31502 7.34496 7.38070 7.54594 7.64711 7.76618 7.95215 8.17813 8.32831 8.72085 8.86407 9.14604 10.37584 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003400 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.488925 B = 8234.475676 C = 9319.627759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.103 3.897 4 C 0.498 3.502 5 O -0.520 6.520 6 N -0.707 5.707 7 C 0.083 3.917 8 C -0.195 4.195 9 C -0.191 4.191 10 C 0.590 3.410 11 O -0.512 6.512 12 C 0.000 4.000 13 C -0.216 4.216 14 C -0.122 4.122 15 C -0.076 4.076 16 C -0.160 4.160 17 C -0.127 4.127 18 C -0.120 4.120 19 C 0.063 3.937 20 N -0.258 5.258 21 C -0.330 4.330 22 H 0.122 0.878 23 C 0.078 3.922 24 N -0.840 5.840 25 Si 0.881 3.119 26 H -0.255 1.255 27 H -0.288 1.288 28 H -0.247 1.247 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.401 0.599 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.157 0.843 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.123 0.877 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 14.971 -0.143 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C -0.024 4.024 4 C 0.283 3.717 5 O -0.393 6.393 6 N -0.359 5.359 7 C -0.023 4.023 8 C -0.233 4.233 9 C -0.229 4.229 10 C 0.381 3.619 11 O -0.387 6.387 12 C -0.116 4.116 13 C -0.242 4.242 14 C -0.127 4.127 15 C -0.095 4.095 16 C -0.180 4.180 17 C -0.148 4.148 18 C -0.139 4.139 19 C -0.051 4.051 20 N 0.080 4.920 21 C -0.457 4.457 22 H 0.139 0.861 23 C -0.134 4.134 24 N -0.470 5.470 25 Si 0.707 3.293 26 H -0.180 1.180 27 H -0.215 1.215 28 H -0.171 1.171 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.235 0.765 35 H 0.154 0.846 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.174 0.826 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.141 0.859 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.390 14.365 -0.635 16.167 hybrid contribution 0.120 -0.250 0.744 0.794 sum -7.271 14.115 0.109 15.878 Atomic orbital electron populations 1.22409 0.79171 1.02559 1.02551 1.47002 1.06929 1.03873 1.75763 1.21184 1.01186 0.86982 0.93079 1.21524 0.77907 0.79577 0.92672 1.90733 1.46644 1.55271 1.46696 1.45390 1.53451 1.29201 1.07814 1.21565 0.99358 0.95516 0.85905 1.23439 0.93142 1.03505 1.03245 1.23380 1.03628 0.92149 1.03761 1.17241 0.86292 0.82413 0.75994 1.90842 1.13720 1.86556 1.47543 1.19638 0.91985 0.87783 1.12232 1.21471 0.93623 0.95683 1.13430 1.18021 0.92424 0.93710 1.08576 1.20156 0.95709 0.93565 1.00059 1.20354 0.96948 0.94588 1.06073 1.20557 0.91787 0.98741 1.03670 1.20334 0.98995 0.91432 1.03171 1.18440 0.88152 0.91570 1.06938 1.40158 1.05188 1.03320 1.43355 1.19428 0.79687 1.18048 1.28579 0.86090 1.25499 0.95547 0.97011 0.95339 1.69598 1.10195 1.26609 1.40621 0.86895 0.80660 0.81618 0.80132 1.18042 1.21549 1.17082 0.91619 0.91671 0.89452 0.87533 0.86441 0.76481 0.84589 0.88379 0.88012 0.88007 0.88534 0.82616 0.87145 0.87251 0.86939 0.85907 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 8.54 59.85 0.51 1.49 16 2 N -0.60 -9.97 2.38 -184.43 -0.44 -10.41 16 3 C 0.10 1.32 5.92 -5.20 -0.03 1.29 16 4 C 0.50 7.09 7.89 -10.99 -0.09 7.00 16 5 O -0.52 -9.78 15.94 5.55 0.09 -9.69 16 6 N -0.71 -7.44 5.57 -53.81 -0.30 -7.74 16 7 C 0.08 0.86 6.43 -67.93 -0.44 0.42 16 8 C -0.19 -1.69 10.46 -26.69 -0.28 -1.96 16 9 C -0.19 -1.38 10.46 -26.69 -0.28 -1.66 16 10 C 0.59 13.21 7.59 -12.76 -0.10 13.11 16 11 O -0.51 -13.25 14.95 5.22 0.08 -13.17 16 12 C 0.00 0.00 6.69 -82.25 -0.55 -0.55 16 13 C -0.22 -4.41 8.76 -39.02 -0.34 -4.75 16 14 C -0.12 -2.68 6.16 -106.89 -0.66 -3.34 16 15 C -0.08 -1.40 10.06 -39.51 -0.40 -1.80 16 16 C -0.16 -2.84 9.97 -39.95 -0.40 -3.24 16 17 C -0.13 -2.47 10.02 -39.50 -0.40 -2.87 16 18 C -0.12 -2.77 6.59 -39.41 -0.26 -3.03 16 19 C 0.06 1.55 4.59 -83.84 -0.39 1.17 16 20 N -0.26 -6.89 2.47 -56.08 -0.14 -7.03 16 21 C -0.33 -9.65 8.97 -15.01 -0.13 -9.78 16 22 H 0.12 3.89 7.80 -52.48 -0.41 3.48 16 23 C 0.08 2.21 5.42 -17.47 -0.09 2.11 16 24 N -0.84 -24.38 13.95 55.50 0.77 -23.60 16 25 Si 0.88 21.95 23.28 -169.99 -3.96 17.99 16 26 H -0.26 -5.88 5.80 56.52 0.33 -5.56 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.25 -6.42 6.23 56.52 0.35 -6.07 16 29 H 0.07 0.75 7.15 -51.93 -0.37 0.38 16 30 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 31 H 0.09 1.26 5.69 -51.93 -0.30 0.96 16 32 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.12 1.56 7.21 -51.93 -0.37 1.19 16 34 H 0.40 2.89 8.83 -40.82 -0.36 2.53 16 35 H 0.14 1.66 7.40 -51.93 -0.38 1.28 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.16 2.47 4.03 -52.49 -0.21 2.26 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 44 H 0.12 2.92 5.21 -52.49 -0.27 2.64 16 45 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -36.87 366.58 -8.41 -45.29 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.73 Total: 9.24 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.32 Total: -6.39 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.10 Total: -48.79 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.17 Total: -22.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -3.96 Total: 17.99 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.87 -8.41 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609160286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.832 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds