Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99590 * 2 1 4 4 C 1.50698 * 109.47009 * 274.46477 * 3 2 1 5 5 O 1.21284 * 120.00295 * 5.05110 * 4 3 2 6 6 N 1.34778 * 120.00005 * 185.04507 * 4 3 2 7 7 C 1.46502 * 120.00312 * 180.02562 * 6 4 3 8 8 C 1.52999 * 117.49775 * 223.74804 * 7 6 4 9 9 C 1.52996 * 117.50056 * 155.08446 * 7 6 4 10 10 C 1.34781 * 120.00240 * 179.97438 * 2 1 3 11 11 O 1.21662 * 119.99785 * 188.19501 * 10 2 1 12 12 C 1.46891 * 119.99774 * 8.20310 * 10 2 1 13 13 C 1.36125 * 125.43541 * 347.97489 * 12 10 2 14 14 C 1.41700 * 107.74546 * 180.02562 * 13 12 10 15 15 C 1.40023 * 133.34693 * 179.97438 * 14 13 12 16 16 C 1.36582 * 119.83171 * 180.02562 * 15 14 13 17 17 C 1.38851 * 120.59484 * 359.97438 * 16 15 14 18 18 C 1.37841 * 120.63680 * 0.28832 * 17 16 15 19 19 C 1.39085 * 119.81568 * 359.46816 * 18 17 16 20 20 N 1.37835 * 133.16760 * 180.19389 * 19 18 17 21 21 C 1.36882 * 125.62097 * 0.26219 * 20 19 18 22 22 H 1.08004 * 120.00191 * 131.47120 * 21 20 19 23 23 C 1.39017 * 120.00362 * 311.47583 * 21 20 19 24 24 N 1.31347 * 120.00205 * 179.75152 * 23 21 20 25 25 Si 1.86794 * 119.99544 * 359.75052 * 23 21 20 26 26 H 1.48505 * 109.46988 * 96.38238 * 25 23 21 27 27 H 1.48503 * 109.47081 * 216.37917 * 25 23 21 28 28 H 1.48495 * 109.47444 * 336.37973 * 25 23 21 29 29 H 1.08996 * 109.46760 * 247.73647 * 1 2 3 30 30 H 1.09001 * 109.47327 * 7.73804 * 1 2 3 31 31 H 1.09003 * 109.47034 * 127.73805 * 1 2 3 32 32 H 1.09001 * 109.47447 * 34.47316 * 3 2 1 33 33 H 1.09006 * 109.46557 * 154.46988 * 3 2 1 34 34 H 0.96996 * 120.00082 * 0.02562 * 6 4 3 35 35 H 1.09000 * 115.54364 * 9.41253 * 7 6 4 36 36 H 1.08996 * 117.49834 * 359.97438 * 8 7 6 37 37 H 1.09002 * 117.49825 * 145.01714 * 8 7 6 38 38 H 1.08997 * 117.49481 * 214.97414 * 9 7 6 39 39 H 1.08997 * 117.49848 * 359.97438 * 9 7 6 40 40 H 1.08002 * 126.12471 * 0.07073 * 13 12 10 41 41 H 1.08003 * 120.08082 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.70049 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.67816 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.09653 * 179.69892 * 18 17 16 45 45 H 0.97003 * 119.99937 * 185.00457 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3528 1.7591 -1.4165 5 8 1.8188 1.1618 -2.3270 6 7 3.0850 2.8615 -1.6715 7 6 3.2356 3.3385 -3.0485 8 6 4.6314 3.7779 -3.4952 9 6 3.5405 4.8239 -3.2522 10 6 2.1390 -1.1672 0.0005 11 8 3.3463 -1.1724 0.1507 12 6 1.4158 -2.4329 -0.1804 13 6 0.0641 -2.5842 -0.1266 14 6 -0.2266 -3.9528 -0.3509 15 6 -1.4185 -4.6853 -0.4088 16 6 -1.3791 -6.0294 -0.6481 17 6 -0.1661 -6.6785 -0.8356 18 6 1.0208 -5.9799 -0.7779 19 6 1.0057 -4.6095 -0.5406 20 7 1.9992 -3.6601 -0.4329 21 6 3.3423 -3.8945 -0.5543 22 1 3.9449 -3.2649 -1.1923 23 6 3.9309 -4.9429 0.1436 24 7 5.2189 -5.1707 0.0233 25 14 2.8901 -6.0275 1.2523 26 1 2.4895 -7.2515 0.5129 27 1 3.6777 -6.4095 2.4520 28 1 1.6757 -5.2840 1.6736 29 1 -0.3633 -0.3893 0.9510 30 1 -0.3634 1.0183 -0.1384 31 1 -0.3633 -0.6290 -0.8127 32 1 1.6454 2.0070 0.5817 33 1 3.1822 1.1197 0.4429 34 1 3.5123 3.3391 -0.9434 35 1 2.6015 2.8489 -3.7876 36 1 5.4375 3.7124 -2.7645 37 1 4.9154 3.5777 -4.5284 38 1 3.1073 5.3113 -4.1256 39 1 3.6286 5.4463 -2.3618 40 1 -0.6576 -1.8012 0.0540 41 1 -2.3666 -4.1888 -0.2636 42 1 -2.2997 -6.5922 -0.6926 43 1 -0.1521 -7.7418 -1.0243 44 1 1.9596 -6.4944 -0.9203 45 1 5.6166 -5.9447 0.4518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609160286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 34.099549 kcal Electronic energy + Delta-G solvation = -29700.022860 eV Core-core repulsion = 25684.589183 eV Total energy + Delta-G solvation = -4015.433677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59757 -41.21322 -40.04437 -38.11278 -37.69218 -36.65593 -35.32646 -34.00600 -33.24266 -30.94300 -30.87289 -29.03522 -27.72539 -26.66602 -24.57892 -23.31561 -23.18336 -22.63619 -21.87520 -21.65683 -20.72304 -19.78059 -18.52099 -18.02852 -17.90932 -17.40590 -17.36522 -16.69348 -16.45288 -16.19429 -16.01943 -15.54645 -15.48962 -15.23401 -15.07590 -14.86557 -14.65830 -14.41393 -14.24695 -13.88935 -13.83695 -13.70168 -13.17798 -13.13179 -12.67367 -12.55159 -12.52096 -12.36976 -12.34240 -12.19681 -11.86532 -11.55313 -11.52574 -11.28986 -11.19201 -10.91507 -10.39570 -9.80548 -9.74438 -8.99918 -8.78600 -8.57656 -6.60582 -0.03127 0.89716 1.06268 1.11561 1.23850 1.35694 1.46430 1.61244 1.99443 2.14698 2.37971 2.69812 2.77060 2.94834 3.13333 3.62058 3.68745 3.79807 3.98912 4.02141 4.03513 4.19553 4.24507 4.28656 4.35489 4.40056 4.53584 4.66424 4.70627 4.72759 4.77252 4.80609 4.93515 4.98089 4.98629 5.07991 5.17114 5.25246 5.37692 5.44639 5.49438 5.66302 5.76764 5.80305 5.99660 6.06861 6.28326 6.42703 6.44542 6.78754 7.11341 7.17291 7.23288 8.33868 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003400 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.488925 B = 8234.475676 C = 9319.627759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.589 5.589 3 C 0.099 3.901 4 C 0.494 3.506 5 O -0.576 6.576 6 N -0.688 5.688 7 C 0.047 3.953 8 C -0.199 4.199 9 C -0.154 4.154 10 C 0.578 3.422 11 O -0.570 6.570 12 C -0.039 4.039 13 C -0.177 4.177 14 C -0.147 4.147 15 C -0.060 4.060 16 C -0.158 4.158 17 C -0.101 4.101 18 C -0.174 4.174 19 C 0.044 3.956 20 N -0.301 5.301 21 C -0.342 4.342 22 H 0.061 0.939 23 C 0.033 3.967 24 N -0.892 5.892 25 Si 0.948 3.052 26 H -0.227 1.227 27 H -0.287 1.287 28 H -0.262 1.262 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.108 0.892 34 H 0.419 0.581 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.207 0.793 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.146 0.854 44 H 0.102 0.898 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 16.163 1.136 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.321 5.321 3 C -0.027 4.027 4 C 0.280 3.720 5 O -0.455 6.455 6 N -0.340 5.340 7 C -0.059 4.059 8 C -0.237 4.237 9 C -0.192 4.192 10 C 0.369 3.631 11 O -0.449 6.449 12 C -0.153 4.153 13 C -0.203 4.203 14 C -0.151 4.151 15 C -0.079 4.079 16 C -0.176 4.176 17 C -0.121 4.121 18 C -0.194 4.194 19 C -0.069 4.069 20 N 0.033 4.967 21 C -0.470 4.470 22 H 0.079 0.921 23 C -0.173 4.173 24 N -0.526 5.526 25 Si 0.771 3.229 26 H -0.151 1.151 27 H -0.215 1.215 28 H -0.186 1.186 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.185 0.815 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.224 0.776 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.164 0.836 44 H 0.119 0.881 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.656 15.650 0.641 20.137 hybrid contribution 1.445 -0.451 0.200 1.527 sum -11.211 15.199 0.841 18.905 Atomic orbital electron populations 1.22668 0.76617 1.05246 1.03126 1.47054 1.08630 1.03277 1.73183 1.21571 1.01631 0.86491 0.93003 1.21756 0.77735 0.79880 0.92598 1.90711 1.49413 1.57158 1.48179 1.45217 1.52003 1.28074 1.08728 1.21606 1.00600 0.98404 0.85254 1.23512 0.92643 1.04192 1.03382 1.23466 1.00687 0.90116 1.04954 1.17473 0.85866 0.83907 0.75898 1.90800 1.16008 1.87556 1.50578 1.20318 0.93693 0.87671 1.13619 1.22171 0.92717 0.96538 1.08919 1.18582 0.92805 0.94308 1.09437 1.20734 0.96033 0.93949 0.97145 1.20944 0.97980 0.94674 1.04030 1.21124 0.91129 1.00333 0.99496 1.20439 0.99911 0.91353 1.07661 1.19032 0.88916 0.92312 1.06618 1.40136 1.04303 1.04948 1.47283 1.18816 0.81375 1.17950 1.28822 0.92092 1.26220 0.96521 0.98277 0.96245 1.69695 1.11717 1.28095 1.43070 0.85919 0.78164 0.80647 0.78124 1.15093 1.21494 1.18624 0.89198 0.87574 0.90879 0.81465 0.87357 0.74351 0.87244 0.88043 0.87980 0.86633 0.86359 0.77621 0.82276 0.82152 0.83616 0.88057 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.45 8.54 127.77 1.09 2.54 16 2 N -0.59 -19.30 2.38 -855.64 -2.04 -21.34 16 3 C 0.10 2.44 5.92 85.63 0.51 2.95 16 4 C 0.49 14.17 7.89 87.66 0.69 14.86 16 5 O -0.58 -22.58 15.94 -3.04 -0.05 -22.62 16 6 N -0.69 -14.18 5.57 -442.53 -2.46 -16.64 16 7 C 0.05 0.98 6.43 44.99 0.29 1.27 16 8 C -0.20 -3.34 10.46 30.62 0.32 -3.02 16 9 C -0.15 -1.90 10.46 30.62 0.32 -1.58 16 10 C 0.58 27.29 7.59 86.51 0.66 27.95 16 11 O -0.57 -32.30 14.95 -4.23 -0.06 -32.36 16 12 C -0.04 -1.95 6.69 39.91 0.27 -1.68 16 13 C -0.18 -6.93 8.76 22.63 0.20 -6.74 16 14 C -0.15 -6.06 6.16 -21.34 -0.13 -6.19 16 15 C -0.06 -1.88 10.06 22.32 0.22 -1.66 16 16 C -0.16 -4.60 9.97 22.03 0.22 -4.38 16 17 C -0.10 -3.54 10.02 22.32 0.22 -3.31 16 18 C -0.17 -7.96 6.59 22.38 0.15 -7.81 16 19 C 0.04 2.20 4.59 39.06 0.18 2.38 16 20 N -0.30 -17.11 2.47 -331.34 -0.82 -17.93 16 21 C -0.34 -22.11 8.97 84.09 0.75 -21.35 16 22 H 0.06 4.50 7.80 -2.91 -0.02 4.48 16 23 C 0.03 2.06 5.42 84.95 0.46 2.52 16 24 N -0.89 -56.51 13.95 21.67 0.30 -56.21 16 25 Si 0.95 48.22 23.28 68.60 1.60 49.81 16 26 H -0.23 -10.32 5.80 99.48 0.58 -9.75 16 27 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 28 H -0.26 -13.72 6.23 99.48 0.62 -13.10 16 29 H 0.09 1.64 7.15 -2.39 -0.02 1.62 16 30 H 0.11 1.59 7.92 -2.39 -0.02 1.57 16 31 H 0.07 1.90 5.69 -2.39 -0.01 1.89 16 32 H 0.17 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.11 2.95 7.21 -2.38 -0.02 2.93 16 34 H 0.42 5.40 8.83 -92.71 -0.82 4.58 16 35 H 0.11 2.87 7.40 -2.39 -0.02 2.85 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.21 5.66 4.03 -2.91 -0.01 5.65 16 41 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 42 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 43 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.10 4.97 5.21 -2.91 -0.02 4.95 16 45 H 0.29 16.56 8.31 -92.71 -0.77 15.79 16 Total: -1.00 -95.40 366.58 2.90 -92.50 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.01 Total: 28.03 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 6.42 Total: -3.25 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -5.02 Total: -112.11 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.11 Total: -54.99 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.60 Total: 49.81 kcal Total: -95.40 2.90 -92.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609160286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.601 kcal (2) G-P(sol) polarization free energy of solvation -95.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds