Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99792 * 2 1 4 4 O 1.42897 * 109.46910 * 135.00481 * 3 2 1 5 5 C 1.36077 * 117.00039 * 179.97438 * 4 3 2 6 6 C 1.35770 * 127.25776 * 0.28467 * 5 4 3 7 7 N 1.36110 * 107.06159 * 180.13581 * 6 5 4 8 8 C 1.40090 * 124.93817 * 179.86868 * 7 6 5 9 9 C 1.38866 * 120.06966 * 179.71851 * 8 7 6 10 10 C 1.38110 * 119.93188 * 179.97438 * 9 8 7 11 11 C 1.38282 * 120.06617 * 0.02562 * 10 9 8 12 12 C 1.38286 * 120.13958 * 0.02562 * 11 10 9 13 13 C 1.38108 * 120.07335 * 359.97438 * 12 11 10 14 14 N 1.28465 * 110.12636 * 359.60386 * 7 6 5 15 15 C 1.31993 * 110.22124 * 0.24751 * 14 7 6 16 16 C 1.47477 * 126.44331 * 179.97438 * 15 14 7 17 17 O 1.21604 * 120.00069 * 175.00584 * 16 15 14 18 18 N 1.34777 * 120.00309 * 355.00868 * 16 15 14 19 19 C 1.46496 * 119.99745 * 2.72286 * 18 16 15 20 20 C 1.46497 * 119.99800 * 182.71909 * 18 16 15 21 21 C 1.50699 * 109.46910 * 90.00415 * 20 18 16 22 22 H 1.07996 * 120.00432 * 359.97438 * 21 20 18 23 23 C 1.37880 * 120.00027 * 179.97438 * 21 20 18 24 24 N 1.31513 * 119.99863 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46783 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47109 * 119.99666 * 25 23 21 28 28 H 1.48504 * 109.46859 * 239.99714 * 25 23 21 29 29 H 1.08003 * 119.99924 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.00119 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00260 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47277 * 14.99998 * 3 2 1 33 33 H 1.09004 * 109.46905 * 255.00263 * 3 2 1 34 34 H 1.07997 * 126.46917 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.03305 * 0.02562 * 9 8 7 36 36 H 1.07994 * 119.97026 * 179.72914 * 10 9 8 37 37 H 1.07999 * 119.93011 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.96389 * 180.02562 * 12 11 10 39 39 H 1.07997 * 120.03826 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.47703 * 83.89644 * 19 18 16 41 41 H 1.09004 * 109.47224 * 203.90052 * 19 18 16 42 42 H 1.09001 * 109.47468 * 323.89638 * 19 18 16 43 43 H 1.09004 * 109.46907 * 209.99389 * 20 18 16 44 44 H 1.08998 * 109.47600 * 330.00210 * 20 18 16 45 45 H 0.97006 * 119.99665 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9107 2.3464 1.0783 6 6 3.7959 3.5171 0.4004 7 7 4.7896 4.3346 0.8440 8 6 5.0181 5.6397 0.3890 9 6 6.0613 6.3883 0.9177 10 6 6.2843 7.6745 0.4666 11 6 5.4695 8.2171 -0.5101 12 6 4.4291 7.4746 -1.0378 13 6 4.2010 6.1878 -0.5909 14 7 5.4843 3.7374 1.7446 15 6 5.0166 2.5201 1.9490 16 6 5.5450 1.5273 2.9029 17 8 4.9671 0.4692 3.0618 18 7 6.6685 1.7926 3.5986 19 6 7.3315 3.0906 3.4518 20 6 7.2264 0.7829 4.5016 21 6 8.2005 -0.0836 3.7457 22 1 8.3852 0.0991 2.6975 23 6 8.8560 -1.1099 4.3925 24 7 8.6315 -1.3322 5.6691 25 14 10.0629 -2.1845 3.4553 26 1 10.1359 -1.7313 2.0431 27 1 11.4064 -2.0801 4.0793 28 1 9.6053 -3.5966 3.4986 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3855 2.1162 0.2660 33 1 2.4754 1.4869 -0.9927 34 1 3.0568 3.7543 -0.3504 35 1 6.6983 5.9648 1.6802 36 1 7.0927 8.2588 0.8805 37 1 5.6456 9.2232 -0.8609 38 1 3.7947 7.9010 -1.8008 39 1 3.3885 5.6083 -1.0037 40 1 6.8565 3.8179 4.1102 41 1 8.3842 2.9930 3.7175 42 1 7.2474 3.4268 2.4184 43 1 7.7427 1.2771 5.3246 44 1 6.4209 0.1642 4.8971 45 1 9.0929 -2.0540 6.1242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610436481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 84.988133 kcal Electronic energy + Delta-G solvation = -28938.563388 eV Core-core repulsion = 24925.336406 eV Total energy + Delta-G solvation = -4013.226982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93579 -39.52697 -38.49460 -38.40803 -34.70912 -34.26812 -33.46769 -32.45459 -31.63121 -30.09263 -29.47454 -27.64217 -26.66705 -25.84942 -24.41920 -23.31249 -22.67614 -21.33715 -20.97117 -20.15423 -19.09805 -18.22318 -17.14892 -16.66282 -16.49762 -16.34540 -16.33264 -15.69880 -15.18414 -15.14729 -14.80297 -14.63568 -14.22531 -14.17379 -13.96790 -13.80964 -13.34756 -13.01392 -12.74064 -12.35589 -12.20278 -12.03481 -11.96802 -11.94929 -11.63604 -11.51278 -11.17637 -11.13930 -10.88115 -10.57757 -10.38205 -10.09547 -9.99632 -9.66525 -9.51275 -9.42440 -9.06347 -8.91760 -8.36280 -8.02485 -7.48760 -5.96715 -4.00985 0.48904 0.92901 1.88527 1.96169 2.22992 2.25614 3.33199 3.35452 3.40981 3.42652 3.47874 3.96669 4.11626 4.21692 4.41755 4.51299 4.56292 4.61479 4.71697 4.78832 4.88262 4.94815 5.00553 5.09342 5.17747 5.21227 5.29255 5.36905 5.54363 5.58205 5.68182 5.84879 5.93348 5.97931 6.08819 6.09199 6.20785 6.32658 6.37680 6.44464 6.51028 6.84392 7.17468 7.37881 7.53375 7.64642 7.85641 8.00981 8.31384 8.50441 8.97976 9.17401 9.63691 11.11292 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.003567 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.371546 B = 7847.229351 C =10607.761640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.084 3.916 4 O -0.262 6.262 5 C 0.076 3.924 6 C -0.112 4.112 7 N -0.234 5.234 8 C 0.150 3.850 9 C -0.113 4.113 10 C -0.096 4.096 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.133 4.133 14 N -0.233 5.233 15 C 0.013 3.987 16 C 0.585 3.415 17 O -0.519 6.519 18 N -0.586 5.586 19 C 0.081 3.919 20 C 0.245 3.755 21 C -0.524 4.524 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.898 3.102 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.181 0.819 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 19.545 -15.460 27.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.173 6.173 5 C 0.022 3.978 6 C -0.250 4.250 7 N -0.019 5.019 8 C 0.059 3.941 9 C -0.132 4.132 10 C -0.114 4.114 11 C -0.146 4.146 12 C -0.115 4.115 13 C -0.153 4.153 14 N -0.067 5.067 15 C -0.149 4.149 16 C 0.369 3.631 17 O -0.393 6.393 18 N -0.317 5.317 19 C -0.063 4.063 20 C 0.126 3.874 21 C -0.563 4.563 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.209 1.209 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.198 0.802 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.796 19.366 -14.763 27.057 hybrid contribution -0.015 -0.979 -0.979 1.384 sum -11.811 18.387 -15.741 26.933 Atomic orbital electron populations 1.23817 0.95334 1.02339 0.99949 1.22691 0.95615 0.98050 1.00163 1.21845 0.88138 0.96955 0.92185 1.86373 1.41255 1.31819 1.57837 1.18719 0.94193 0.87278 0.97657 1.22394 1.01008 0.92282 1.09357 1.42243 1.21469 1.10339 1.27883 1.17651 0.98068 0.81172 0.97210 1.21051 0.96901 0.94356 1.00931 1.21115 0.99394 0.94391 0.96520 1.21280 0.95583 1.00377 0.97325 1.20974 0.97847 0.93125 0.99595 1.20835 1.00214 0.96755 0.97520 1.73972 1.18432 1.06907 1.07381 1.22236 0.97137 0.92884 1.02679 1.16706 0.81509 0.84666 0.80259 1.90813 1.59034 1.24046 1.65447 1.48002 1.24093 1.16494 1.43159 1.21917 0.97776 0.84494 1.02110 1.19366 0.94280 0.85765 0.87961 1.21496 1.23506 1.14555 0.96739 0.92335 1.24930 0.97126 0.97121 0.94935 1.69951 1.42863 1.31454 1.09153 0.86444 0.80544 0.80448 0.80006 1.19806 1.20993 1.20872 0.88473 0.87470 0.85868 0.91888 0.91385 0.80176 0.83828 0.84779 0.85362 0.84980 0.85130 0.93918 0.91167 0.90346 0.94677 0.93552 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 14.31 29.02 0.42 -1.16 16 2 C -0.15 -1.64 9.89 -36.02 -0.36 -2.00 16 3 C 0.08 0.98 5.56 36.01 0.20 1.18 16 4 O -0.26 -4.58 9.75 -21.93 -0.21 -4.79 16 5 C 0.08 1.32 7.05 -39.10 -0.28 1.04 16 6 C -0.11 -1.48 9.91 -16.54 -0.16 -1.64 16 7 N -0.23 -3.29 3.52 -10.40 -0.04 -3.32 16 8 C 0.15 1.68 6.66 -83.62 -0.56 1.12 16 9 C -0.11 -1.15 9.59 -39.40 -0.38 -1.53 16 10 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 11 C -0.13 -0.81 10.04 -39.55 -0.40 -1.21 16 12 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 13 C -0.13 -1.10 9.43 -39.40 -0.37 -1.47 16 14 N -0.23 -3.93 7.66 33.46 0.26 -3.67 16 15 C 0.01 0.25 6.83 -82.67 -0.56 -0.31 16 16 C 0.59 14.18 7.67 -12.50 -0.10 14.09 16 17 O -0.52 -14.49 16.10 3.33 0.05 -14.44 16 18 N -0.59 -13.96 2.86 -184.22 -0.53 -14.48 16 19 C 0.08 1.53 9.60 59.84 0.57 2.10 16 20 C 0.25 6.79 5.15 -5.20 -0.03 6.76 16 21 C -0.52 -15.53 9.39 -34.44 -0.32 -15.85 16 22 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 23 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 25 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 29 H 0.10 0.71 7.90 -52.48 -0.41 0.30 16 30 H 0.11 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 34 H 0.18 1.57 6.64 -52.49 -0.35 1.22 16 35 H 0.14 1.54 7.64 -52.48 -0.40 1.14 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.84 6.65 -52.49 -0.35 0.49 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 42 H 0.08 1.39 5.37 -51.93 -0.28 1.11 16 43 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 44 H 0.05 1.43 7.38 -51.93 -0.38 1.04 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -36.91 388.83 -8.03 -44.93 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.92 Total: -1.71 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.21 Total: 0.66 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.43 Total: -48.02 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.16 Total: -19.23 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.91 -8.03 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610436481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.920 kcal (2) G-P(sol) polarization free energy of solvation -36.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds