Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45751 * 117.94300 * 2 1 4 4 C 1.52926 * 110.48418 * 199.07187 * 3 2 1 5 5 C 1.53344 * 108.67260 * 309.24370 * 4 3 2 6 6 C 1.53089 * 108.41386 * 67.54728 * 5 4 3 7 7 H 1.08998 * 109.32805 * 71.16545 * 6 5 4 8 8 N 1.46494 * 109.40436 * 190.95325 * 6 5 4 9 9 C 1.34770 * 120.00286 * 202.34339 * 8 6 5 10 10 O 1.21673 * 119.99770 * 5.02471 * 9 8 6 11 11 C 1.46886 * 120.00310 * 185.02057 * 9 8 6 12 12 C 1.36131 * 125.43721 * 185.45604 * 11 9 8 13 13 C 1.41700 * 107.74911 * 179.90851 * 12 11 9 14 14 C 1.40022 * 133.35077 * 180.09795 * 13 12 11 15 15 C 1.36577 * 119.82859 * 180.27763 * 14 13 12 16 16 C 1.38858 * 120.60201 * 0.02562 * 15 14 13 17 17 C 1.37843 * 120.63350 * 359.97438 * 16 15 14 18 18 C 1.39085 * 119.81272 * 0.03857 * 17 16 15 19 19 N 1.37837 * 133.16319 * 179.97438 * 18 17 16 20 20 C 1.36898 * 125.62148 * 359.97086 * 19 18 17 21 21 H 1.07992 * 120.00274 * 126.44567 * 20 19 18 22 22 C 1.39013 * 119.99532 * 306.44559 * 20 19 18 23 23 N 1.31345 * 120.00014 * 184.09387 * 22 20 19 24 24 Si 1.86802 * 119.99956 * 4.09404 * 22 20 19 25 25 H 1.48503 * 109.47069 * 94.86405 * 24 22 20 26 26 H 1.48503 * 109.47417 * 214.86666 * 24 22 20 27 27 H 1.48503 * 109.47370 * 334.86682 * 24 22 20 28 28 C 1.33356 * 117.94615 * 180.02562 * 2 1 3 29 29 O 1.21280 * 118.24696 * 357.76124 * 28 2 1 30 30 H 1.08996 * 109.47031 * 90.00398 * 1 2 3 31 31 H 1.09006 * 109.47376 * 210.00060 * 1 2 3 32 32 H 1.08995 * 109.47502 * 330.00235 * 1 2 3 33 33 H 1.09002 * 109.30276 * 78.76584 * 3 2 1 34 34 H 1.08993 * 109.30386 * 319.38131 * 3 2 1 35 35 H 1.08994 * 109.60686 * 69.00560 * 4 3 2 36 36 H 1.09004 * 109.60207 * 189.49571 * 4 3 2 37 37 H 1.09001 * 109.67282 * 187.26606 * 5 4 3 38 38 H 1.08999 * 109.67682 * 307.79959 * 5 4 3 39 39 H 0.97004 * 119.99742 * 22.34791 * 8 6 5 40 40 H 1.07998 * 126.12179 * 0.02562 * 12 11 9 41 41 H 1.08001 * 120.08211 * 0.26131 * 14 13 12 42 42 H 1.07996 * 119.69553 * 180.02562 * 15 14 13 43 43 H 1.07995 * 119.68324 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.09603 * 180.02562 * 17 16 15 45 45 H 0.96997 * 119.99621 * 185.00290 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1259 -0.4681 5 6 4.2492 -0.0012 0.3399 6 6 3.5838 -1.3240 -0.0488 7 1 3.8882 -1.5978 -1.0590 8 7 4.0010 -2.3719 0.8860 9 6 3.9320 -3.6673 0.5209 10 8 3.6107 -3.9629 -0.6148 11 6 4.2449 -4.7224 1.4937 12 6 4.3132 -6.0540 1.2194 13 6 4.6416 -6.7266 2.4225 14 6 4.8441 -8.0738 2.7461 15 6 5.1526 -8.4253 4.0293 16 6 5.2673 -7.4581 5.0191 17 6 5.0724 -6.1256 4.7249 18 6 4.7571 -5.7433 3.4254 19 7 4.5097 -4.5224 2.8354 20 6 4.5246 -3.3111 3.4731 21 1 5.1359 -2.5070 3.0908 22 6 3.7529 -3.1162 4.6128 23 7 3.7043 -1.9317 5.1784 24 14 2.7851 -4.5388 5.3400 25 1 3.5818 -5.1805 6.4165 26 1 1.5083 -4.0319 5.9042 27 1 2.4957 -5.5351 4.2775 28 6 2.0899 -1.1780 -0.0005 29 8 1.4159 -2.1854 0.0408 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 2.1398 1.6998 1.0090 34 1 1.6270 1.9718 -0.6697 35 1 3.6102 0.8726 -1.5281 36 1 4.1384 2.0564 -0.3041 37 1 5.3142 -0.0455 0.1121 38 1 4.1086 0.1815 1.4052 39 1 4.3269 -2.1333 1.7680 40 1 4.1486 -6.5149 0.2567 41 1 4.7564 -8.8330 1.9830 42 1 5.3088 -9.4650 4.2764 43 1 5.5122 -7.7527 6.0288 44 1 5.1641 -5.3806 5.5014 45 1 3.2253 -1.8122 6.0133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610497557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 6.302643 kcal Electronic energy + Delta-G solvation = -30603.972008 eV Core-core repulsion = 26587.332967 eV Total energy + Delta-G solvation = -4016.639041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91660 -40.37882 -38.30695 -36.33685 -36.19768 -34.94958 -33.55195 -32.29940 -31.44892 -29.52043 -28.89068 -27.93384 -27.03739 -24.97163 -24.33706 -22.61257 -22.29916 -21.16177 -20.32220 -19.37173 -18.71709 -18.32380 -16.72149 -16.66379 -16.37442 -16.03431 -15.85878 -15.26479 -14.96019 -14.44523 -14.30466 -14.19375 -13.92221 -13.62856 -13.49511 -13.30010 -13.24314 -13.08752 -12.78965 -12.53761 -12.27643 -12.18440 -11.99280 -11.87919 -11.48246 -11.43561 -11.29260 -11.05006 -10.92743 -10.80610 -10.53040 -10.19570 -10.01452 -9.74504 -9.39965 -9.33384 -8.76029 -8.59043 -8.44760 -7.33821 -7.03026 -6.83401 -4.84778 1.57161 2.44838 2.74686 2.91083 3.00328 3.10439 3.19309 3.25700 3.79330 3.89387 4.12887 4.23879 4.49857 4.63328 4.67431 4.69605 4.74508 4.80603 5.26797 5.29410 5.37627 5.41795 5.51033 5.56629 5.63860 5.64822 5.68669 5.76294 5.87778 5.90310 5.95635 6.14338 6.15317 6.20157 6.40313 6.49924 6.57633 6.72138 6.78783 6.95206 7.17649 7.22229 7.28962 7.52987 7.57908 7.59683 7.64184 8.03873 8.23607 8.44718 8.57860 8.94948 9.01653 10.08457 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.004192 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.772092 B = 6678.275675 C = 7489.727484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.114 3.886 4 C -0.130 4.130 5 C -0.132 4.132 6 C 0.139 3.861 7 H 0.112 0.888 8 N -0.710 5.710 9 C 0.603 3.397 10 O -0.541 6.541 11 C 0.005 3.995 12 C -0.157 4.157 13 C -0.127 4.127 14 C -0.070 4.070 15 C -0.164 4.164 16 C -0.120 4.120 17 C -0.124 4.124 18 C 0.080 3.920 19 N -0.289 5.289 20 C -0.373 4.373 21 H 0.119 0.881 22 C 0.089 3.911 23 N -0.837 5.837 24 Si 0.882 3.118 25 H -0.256 1.256 26 H -0.286 1.286 27 H -0.245 1.245 28 C 0.501 3.499 29 O -0.522 6.522 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.421 0.579 40 H 0.140 0.860 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 6.383 -5.049 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.348 5.348 3 C -0.009 4.009 4 C -0.168 4.168 5 C -0.170 4.170 6 C 0.030 3.970 7 H 0.130 0.870 8 N -0.371 5.371 9 C 0.392 3.608 10 O -0.418 6.418 11 C -0.109 4.109 12 C -0.184 4.184 13 C -0.132 4.132 14 C -0.089 4.089 15 C -0.183 4.183 16 C -0.140 4.140 17 C -0.143 4.143 18 C -0.034 4.034 19 N 0.044 4.956 20 C -0.499 4.499 21 H 0.136 0.864 22 C -0.125 4.125 23 N -0.466 5.466 24 Si 0.707 3.293 25 H -0.181 1.181 26 H -0.213 1.213 27 H -0.168 1.168 28 C 0.287 3.713 29 O -0.396 6.396 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.268 0.732 40 H 0.158 0.842 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.430 6.215 -5.544 8.340 hybrid contribution -0.442 -0.140 1.074 1.170 sum -0.872 6.076 -4.469 7.593 Atomic orbital electron populations 1.21629 0.79998 1.03210 1.01524 1.47276 1.07171 1.05922 1.74471 1.21403 0.93149 0.84740 1.01645 1.21828 0.94695 0.99678 1.00619 1.21959 1.00794 0.92322 1.01965 1.20649 0.89939 0.89259 0.97160 0.86999 1.46505 1.66310 1.04606 1.19714 1.17100 0.75869 0.81686 0.86144 1.90726 1.48468 1.82832 1.19753 1.20320 1.10649 0.94271 0.85632 1.20525 1.09393 0.90801 0.97644 1.18045 1.08564 0.93125 0.93439 1.20215 0.98980 0.93666 0.96059 1.20365 1.06209 0.98390 0.93343 1.20614 1.02735 0.92017 0.98668 1.20224 1.03621 0.96476 0.94018 1.18518 1.04157 0.86331 0.94344 1.40245 1.45704 1.04541 1.05111 1.19007 1.29695 0.88360 1.12854 0.86417 1.25497 0.94037 0.97025 0.95963 1.69567 1.38129 1.21468 1.17449 0.86774 0.79341 0.81838 0.81355 1.18080 1.21339 1.16818 1.20768 0.91492 0.82812 0.76258 1.90743 1.65724 1.35562 1.47592 0.93004 0.90254 0.91564 0.91566 0.90815 0.90722 0.89195 0.89731 0.89768 0.73176 0.84237 0.86972 0.87127 0.86853 0.86093 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.24 59.85 0.61 1.63 16 2 N -0.61 -8.79 3.21 -182.86 -0.59 -9.38 16 3 C 0.11 1.12 6.32 -4.48 -0.03 1.10 16 4 C -0.13 -1.16 6.02 -26.59 -0.16 -1.32 16 5 C -0.13 -1.63 5.49 -26.51 -0.15 -1.77 16 6 C 0.14 2.37 2.71 -69.30 -0.19 2.19 16 7 H 0.11 1.89 7.60 -51.93 -0.39 1.50 16 8 N -0.71 -14.71 4.90 -56.39 -0.28 -14.99 16 9 C 0.60 14.23 7.06 -12.76 -0.09 14.14 16 10 O -0.54 -13.52 16.08 2.88 0.05 -13.47 16 11 C 0.01 0.12 6.77 -82.25 -0.56 -0.43 16 12 C -0.16 -3.58 10.55 -39.02 -0.41 -3.99 16 13 C -0.13 -2.84 6.16 -106.89 -0.66 -3.50 16 14 C -0.07 -1.33 10.06 -39.51 -0.40 -1.73 16 15 C -0.16 -2.87 9.97 -39.95 -0.40 -3.27 16 16 C -0.12 -2.24 10.02 -39.50 -0.40 -2.64 16 17 C -0.12 -2.70 6.85 -39.41 -0.27 -2.97 16 18 C 0.08 1.90 4.56 -83.83 -0.38 1.51 16 19 N -0.29 -7.13 2.42 -56.08 -0.14 -7.27 16 20 C -0.37 -9.29 8.33 -15.00 -0.12 -9.41 16 21 H 0.12 2.91 6.41 -52.49 -0.34 2.57 16 22 C 0.09 2.24 5.49 -17.47 -0.10 2.15 16 23 N -0.84 -21.12 13.95 55.50 0.77 -20.34 16 24 Si 0.88 20.94 23.52 -169.99 -4.00 16.94 16 25 H -0.26 -5.65 6.06 56.52 0.34 -5.30 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.25 -6.31 6.23 56.52 0.35 -5.96 16 28 C 0.50 9.36 7.20 -11.87 -0.09 9.27 16 29 O -0.52 -12.29 14.83 3.22 0.05 -12.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.23 7.13 -51.93 -0.37 0.86 16 32 H 0.07 0.64 8.01 -51.93 -0.42 0.23 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 39 H 0.42 8.92 4.43 -40.82 -0.18 8.74 16 40 H 0.14 2.92 8.06 -52.49 -0.42 2.49 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.65 5.70 -52.49 -0.30 2.35 16 45 H 0.29 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -32.57 358.82 -8.38 -40.96 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -5.89 Total: 13.45 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.78 Total: 0.94 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.22 Total: -51.98 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.09 Total: -25.72 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.00 Total: 16.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.57 -8.38 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610497557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.262 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds