Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.45759 * 117.94641 * 2 1 4 4 C 1.52911 * 110.48664 * 160.92431 * 3 2 1 5 5 C 1.53349 * 108.67503 * 50.75625 * 4 3 2 6 6 C 1.53062 * 108.42220 * 292.46736 * 5 4 3 7 7 H 1.09006 * 109.40440 * 288.85487 * 6 5 4 8 8 N 1.46506 * 109.40041 * 169.03088 * 6 5 4 9 9 C 1.34776 * 120.00124 * 148.31335 * 8 6 5 10 10 O 1.21663 * 120.00116 * 2.94029 * 9 8 6 11 11 C 1.46891 * 119.99885 * 182.94332 * 9 8 6 12 12 C 1.36123 * 125.43449 * 173.51947 * 11 9 8 13 13 C 1.41702 * 107.74798 * 180.09942 * 12 11 9 14 14 C 1.40012 * 133.35391 * 179.40729 * 13 12 11 15 15 C 1.36579 * 119.83809 * 180.02562 * 14 13 12 16 16 C 1.38859 * 120.59385 * 0.02562 * 15 14 13 17 17 C 1.37843 * 120.63506 * 359.95349 * 16 15 14 18 18 C 1.39093 * 119.81510 * 0.28055 * 17 16 15 19 19 N 1.37833 * 133.16637 * 179.74838 * 18 17 16 20 20 C 1.36888 * 125.62174 * 359.97438 * 19 18 17 21 21 H 1.08005 * 119.99751 * 132.73002 * 20 19 18 22 22 C 1.39015 * 119.99992 * 312.73597 * 20 19 18 23 23 N 1.31343 * 119.99938 * 350.58429 * 22 20 19 24 24 Si 1.86800 * 119.99914 * 170.58782 * 22 20 19 25 25 H 1.48501 * 109.47265 * 55.01441 * 24 22 20 26 26 H 1.48491 * 109.47090 * 175.01629 * 24 22 20 27 27 H 1.48498 * 109.47221 * 295.02087 * 24 22 20 28 28 C 1.33350 * 117.94600 * 180.02562 * 2 1 3 29 29 O 1.21273 * 118.24808 * 2.22482 * 28 2 1 30 30 H 1.09001 * 109.47390 * 89.99830 * 1 2 3 31 31 H 1.09000 * 109.46621 * 209.99762 * 1 2 3 32 32 H 1.09004 * 109.47145 * 329.99816 * 1 2 3 33 33 H 1.08999 * 109.29889 * 40.61494 * 3 2 1 34 34 H 1.08994 * 109.13255 * 281.13311 * 3 2 1 35 35 H 1.09001 * 109.60650 * 290.99636 * 4 3 2 36 36 H 1.09000 * 109.73789 * 170.58925 * 4 3 2 37 37 H 1.09002 * 109.67575 * 172.73543 * 5 4 3 38 38 H 1.09004 * 109.67201 * 52.19991 * 5 4 3 39 39 H 0.97001 * 119.99641 * 328.30592 * 8 6 5 40 40 H 1.08005 * 126.12684 * 359.54482 * 12 11 9 41 41 H 1.08006 * 120.08263 * 359.97438 * 14 13 12 42 42 H 1.07997 * 119.70626 * 179.97438 * 15 14 13 43 43 H 1.07996 * 119.68360 * 179.97438 * 16 15 14 44 44 H 1.07996 * 120.09627 * 179.97438 * 17 16 15 45 45 H 0.97000 * 119.99657 * 185.04923 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1260 0.4681 5 6 4.2492 -0.0013 -0.3397 6 6 3.5838 -1.3239 0.0485 7 1 3.8869 -1.5989 1.0588 8 7 4.0011 -2.3715 -0.8868 9 6 4.1121 -3.6466 -0.4646 10 8 3.8145 -3.9370 0.6788 11 6 4.5925 -4.6858 -1.3849 12 6 4.8650 -5.9757 -1.0458 13 6 5.3032 -6.6462 -2.2147 14 6 5.7235 -7.9571 -2.4704 15 6 6.0960 -8.3170 -3.7342 16 6 6.0624 -7.3937 -4.7708 17 6 5.6519 -6.0975 -4.5439 18 6 5.2725 -5.7062 -3.2642 19 7 4.8315 -4.5123 -2.7351 20 6 4.6591 -3.3467 -3.4319 21 1 3.7495 -2.7764 -3.3136 22 6 5.6545 -2.8973 -4.2919 23 7 6.8298 -3.4837 -4.2995 24 14 5.3207 -1.4592 -5.4364 25 1 4.8541 -0.2935 -4.6436 26 1 6.5684 -1.1002 -6.1570 27 1 4.2742 -1.8407 -6.4184 28 6 2.0899 -1.1780 -0.0005 29 8 1.4159 -2.1853 -0.0424 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6271 1.9718 0.6697 34 1 2.1399 1.6964 -1.0104 35 1 3.6101 0.8726 1.5282 36 1 4.1401 2.0558 0.3065 37 1 5.3143 -0.0455 -0.1119 38 1 4.1087 0.1815 -1.4051 39 1 4.1974 -2.1474 -1.8099 40 1 4.7732 -6.4080 -0.0604 41 1 5.7540 -8.6816 -1.6700 42 1 6.4203 -9.3285 -3.9289 43 1 6.3605 -7.6940 -5.7644 44 1 5.6295 -5.3864 -5.3564 45 1 7.5471 -3.1252 -4.8453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610497558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = -4.757659 kcal Electronic energy + Delta-G solvation = -30356.976247 eV Core-core repulsion = 26339.857595 eV Total energy + Delta-G solvation = -4017.118652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73789 -40.24531 -38.23967 -36.43452 -35.90685 -34.97758 -33.60275 -32.34832 -30.75246 -29.36954 -28.67452 -27.70981 -27.13101 -25.06808 -24.33593 -22.44312 -22.33951 -20.97247 -20.05760 -19.39653 -18.72439 -18.07045 -16.76684 -16.54370 -16.45980 -16.04695 -15.61478 -15.01729 -14.85846 -14.66150 -14.30172 -14.08442 -13.80991 -13.61975 -13.51672 -13.05936 -12.96263 -12.88719 -12.67639 -12.49886 -12.29000 -12.00168 -11.93091 -11.71391 -11.56237 -11.45281 -11.34203 -11.24749 -10.98115 -10.79872 -10.67745 -10.19273 -9.80822 -9.76359 -9.36620 -9.29227 -8.72020 -8.63213 -8.48098 -7.15389 -6.85616 -6.58886 -4.73309 1.86905 2.72822 2.74501 2.89787 2.91443 2.92429 2.95288 3.23558 3.65832 3.81788 4.25826 4.52347 4.53794 4.58862 4.63758 4.71262 4.77393 5.08175 5.18585 5.22970 5.29363 5.32856 5.50129 5.59310 5.62892 5.77561 5.80036 5.89146 5.91099 5.96482 6.07316 6.19425 6.39180 6.45636 6.57306 6.71033 6.82321 6.92149 6.94805 7.11724 7.13127 7.46528 7.48868 7.58832 7.65297 7.92356 7.95137 8.20950 8.30839 8.33623 8.67301 9.01104 9.28606 10.11732 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012705 B = 0.004236 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.360533 B = 6608.718444 C = 8012.839396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.114 3.886 4 C -0.132 4.132 5 C -0.132 4.132 6 C 0.136 3.864 7 H 0.118 0.882 8 N -0.712 5.712 9 C 0.605 3.395 10 O -0.546 6.546 11 C -0.011 4.011 12 C -0.163 4.163 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.162 4.162 16 C -0.143 4.143 17 C -0.061 4.061 18 C 0.110 3.890 19 N -0.261 5.261 20 C -0.380 4.380 21 H 0.103 0.897 22 C 0.062 3.938 23 N -0.815 5.815 24 Si 0.924 3.076 25 H -0.265 1.265 26 H -0.274 1.274 27 H -0.264 1.264 28 C 0.499 3.501 29 O -0.523 6.523 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.419 0.581 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 11.070 3.073 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.350 5.350 3 C -0.009 4.009 4 C -0.170 4.170 5 C -0.171 4.171 6 C 0.027 3.973 7 H 0.135 0.865 8 N -0.373 5.373 9 C 0.395 3.605 10 O -0.423 6.423 11 C -0.125 4.125 12 C -0.191 4.191 13 C -0.138 4.138 14 C -0.102 4.102 15 C -0.181 4.181 16 C -0.164 4.164 17 C -0.081 4.081 18 C -0.005 4.005 19 N 0.074 4.926 20 C -0.507 4.507 21 H 0.121 0.879 22 C -0.153 4.153 23 N -0.443 5.443 24 Si 0.748 3.252 25 H -0.189 1.189 26 H -0.199 1.199 27 H -0.188 1.188 28 C 0.285 3.715 29 O -0.398 6.398 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.265 0.735 40 H 0.151 0.849 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.058 10.665 3.542 11.948 hybrid contribution 0.105 1.003 -1.085 1.481 sum -3.953 11.668 2.457 12.562 Atomic orbital electron populations 1.21656 0.79913 1.02907 1.01885 1.47345 1.07215 1.05983 1.74417 1.21429 0.93266 0.84662 1.01568 1.21851 0.94588 0.99739 1.00841 1.21982 1.01228 0.92448 1.01397 1.20673 0.89551 0.89289 0.97796 0.86475 1.46449 1.69045 1.06512 1.15275 1.17215 0.75658 0.81381 0.86281 1.90714 1.50557 1.81731 1.19340 1.20108 1.12517 0.95474 0.84447 1.20401 1.08845 0.92205 0.97665 1.18029 1.07900 0.94097 0.93782 1.20070 1.00066 0.93957 0.96147 1.20264 1.05931 0.98579 0.93365 1.20562 1.04308 0.93418 0.98105 1.19997 0.98694 0.94815 0.94546 1.18262 1.03364 0.84884 0.93985 1.39863 1.42879 1.06464 1.03363 1.19431 1.04543 1.00938 1.25758 0.87937 1.25702 0.94204 0.98447 0.96901 1.69900 1.01476 1.37694 1.35218 0.86031 0.78846 0.80076 0.80274 1.18924 1.19907 1.18830 1.20868 0.91563 0.82733 0.76315 1.90740 1.65762 1.35604 1.47645 0.92867 0.90370 0.91559 0.90679 0.91712 0.90579 0.89191 0.89492 0.90376 0.73517 0.84944 0.87700 0.87879 0.87672 0.87058 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.22 59.85 0.61 1.50 16 2 N -0.61 -7.93 3.21 -182.86 -0.59 -8.52 16 3 C 0.11 0.99 6.39 -4.49 -0.03 0.96 16 4 C -0.13 -1.10 6.02 -26.60 -0.16 -1.26 16 5 C -0.13 -1.57 5.54 -26.52 -0.15 -1.72 16 6 C 0.14 2.26 2.75 -69.30 -0.19 2.07 16 7 H 0.12 2.00 7.41 -51.93 -0.38 1.62 16 8 N -0.71 -14.59 4.77 -56.39 -0.27 -14.86 16 9 C 0.61 14.49 7.42 -12.76 -0.09 14.40 16 10 O -0.55 -13.90 16.43 5.22 0.09 -13.81 16 11 C -0.01 -0.27 6.77 -82.25 -0.56 -0.83 16 12 C -0.16 -3.99 10.55 -39.02 -0.41 -4.40 16 13 C -0.13 -3.22 6.16 -106.89 -0.66 -3.88 16 14 C -0.08 -1.75 10.06 -39.52 -0.40 -2.15 16 15 C -0.16 -3.17 9.97 -39.95 -0.40 -3.57 16 16 C -0.14 -2.94 10.02 -39.50 -0.40 -3.33 16 17 C -0.06 -1.43 8.72 -39.41 -0.34 -1.77 16 18 C 0.11 2.79 6.03 -83.83 -0.51 2.28 16 19 N -0.26 -6.68 2.77 -56.08 -0.16 -6.84 16 20 C -0.38 -9.15 7.53 -15.01 -0.11 -9.26 16 21 H 0.10 2.39 6.61 -52.48 -0.35 2.04 16 22 C 0.06 1.43 4.74 -17.47 -0.08 1.34 16 23 N -0.82 -19.90 11.32 55.50 0.63 -19.28 16 24 Si 0.92 17.22 29.57 -169.99 -5.03 12.20 16 25 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 26 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 27 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 28 C 0.50 8.67 7.20 -11.87 -0.09 8.59 16 29 O -0.52 -11.57 15.63 5.56 0.09 -11.48 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.03 7.21 -51.93 -0.37 0.66 16 32 H 0.07 0.51 7.86 -51.93 -0.41 0.11 16 33 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 39 H 0.42 8.61 4.61 -40.82 -0.19 8.42 16 40 H 0.13 2.99 8.06 -52.48 -0.42 2.57 16 41 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 44 H 0.11 2.64 7.01 -52.49 -0.37 2.27 16 45 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -32.41 369.07 -9.47 -41.89 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -5.84 Total: 16.16 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.96 Total: -1.03 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.38 Total: -49.48 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.17 Total: -25.29 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.41 -9.47 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610497558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.128 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds