Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45772 * 117.95846 * 2 1 4 4 C 1.52921 * 110.42044 * 199.30713 * 3 2 1 5 5 C 1.53355 * 108.67322 * 309.03297 * 4 3 2 6 6 H 1.08999 * 109.66874 * 307.79553 * 5 4 3 7 7 N 1.46499 * 109.70038 * 187.28626 * 5 4 3 8 8 C 1.34780 * 119.99959 * 152.07165 * 7 5 4 9 9 O 1.21667 * 119.99862 * 4.77594 * 8 7 5 10 10 C 1.46883 * 119.99885 * 184.78778 * 8 7 5 11 11 C 1.36119 * 125.43657 * 185.39387 * 10 8 7 12 12 C 1.41703 * 107.74953 * 179.84611 * 11 10 8 13 13 C 1.40026 * 133.34953 * 180.09256 * 12 11 10 14 14 C 1.36579 * 119.82765 * 180.35231 * 13 12 11 15 15 C 1.38853 * 120.60156 * 359.97438 * 14 13 12 16 16 C 1.37843 * 120.63430 * 359.97438 * 15 14 13 17 17 C 1.39084 * 119.81287 * 0.03331 * 16 15 14 18 18 N 1.37843 * 133.16586 * 179.97438 * 17 16 15 19 19 C 1.36891 * 125.61586 * 0.02562 * 18 17 16 20 20 H 1.08002 * 119.99993 * 126.30974 * 19 18 17 21 21 C 1.39018 * 120.00074 * 306.31325 * 19 18 17 22 22 N 1.31343 * 119.99599 * 183.95221 * 21 19 18 23 23 Si 1.86797 * 119.99929 * 3.95429 * 21 19 18 24 24 H 1.48494 * 109.47299 * 94.88697 * 23 21 19 25 25 H 1.48495 * 109.47004 * 214.89251 * 23 21 19 26 26 H 1.48504 * 109.47234 * 334.88831 * 23 21 19 27 27 C 1.53068 * 108.42633 * 67.52996 * 5 4 3 28 28 C 1.33348 * 117.94638 * 179.74615 * 2 1 3 29 29 O 1.21281 * 118.24769 * 357.75411 * 28 2 1 30 30 H 1.09005 * 109.46904 * 180.25199 * 1 2 3 31 31 H 1.09000 * 109.47228 * 300.25398 * 1 2 3 32 32 H 1.09007 * 109.46752 * 60.25364 * 1 2 3 33 33 H 1.09000 * 109.50877 * 78.90835 * 3 2 1 34 34 H 1.08994 * 108.99148 * 319.38113 * 3 2 1 35 35 H 1.09000 * 109.60315 * 189.27915 * 4 3 2 36 36 H 1.08991 * 109.73741 * 68.86554 * 4 3 2 37 37 H 0.96996 * 120.00176 * 332.05525 * 7 5 4 38 38 H 1.08004 * 126.12552 * 359.97438 * 11 10 8 39 39 H 1.07997 * 120.08458 * 0.36941 * 13 12 11 40 40 H 1.07999 * 119.69730 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.68298 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.09390 * 179.97438 * 16 15 14 43 43 H 0.97008 * 119.99578 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.39655 * 190.97109 * 27 5 4 45 45 H 1.08993 * 109.39940 * 71.22993 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1485 1.2876 0.0000 4 6 3.5933 1.1248 -0.4738 5 6 4.2509 -0.0011 0.3335 6 1 4.1148 0.1838 1.3991 7 7 5.6811 -0.0616 0.0223 8 6 6.5515 -0.5269 0.9402 9 8 6.1417 -0.9775 1.9935 10 6 7.9946 -0.4899 0.6690 11 6 8.9613 -1.0212 1.4664 12 6 10.2132 -0.7764 0.8493 13 6 11.5336 -1.0854 1.1981 14 6 12.5595 -0.7006 0.3827 15 6 12.3059 -0.0050 -0.7920 16 6 11.0145 0.3097 -1.1571 17 6 9.9534 -0.0713 -0.3428 18 7 8.5879 0.0932 -0.4347 19 6 7.9283 0.7303 -1.4510 20 1 7.1310 0.2262 -1.9770 21 6 8.2847 2.0263 -1.8062 22 7 7.6018 2.6659 -2.7279 23 14 9.7348 2.8578 -0.9725 24 1 10.9542 2.6721 -1.7993 25 1 9.4544 4.3083 -0.8225 26 1 9.9485 2.2539 0.3673 27 6 3.5836 -1.3244 -0.0493 28 6 2.0900 -1.1780 0.0052 29 8 1.4159 -2.1851 0.0515 30 1 -0.3633 -1.0277 0.0045 31 1 -0.3634 0.5178 0.8877 32 1 -0.3633 0.5099 -0.8923 33 1 2.1446 1.7018 1.0082 34 1 1.6238 1.9677 -0.6710 35 1 4.1377 2.0555 -0.3140 36 1 3.6067 0.8706 -1.5336 37 1 6.0018 0.2331 -0.8444 38 1 8.8026 -1.5387 2.4010 39 1 11.7403 -1.6267 2.1095 40 1 13.5771 -0.9404 0.6536 41 1 13.1284 0.2917 -1.4260 42 1 10.8274 0.8515 -2.0725 43 1 7.8502 3.5703 -2.9755 44 1 3.8969 -2.1024 0.6468 45 1 3.8836 -1.6021 -1.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619445096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = 0.090839 kcal Electronic energy + Delta-G solvation = -29954.718747 eV Core-core repulsion = 25937.810341 eV Total energy + Delta-G solvation = -4016.908405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98769 -40.50228 -38.74878 -36.59789 -36.26752 -34.98261 -33.64210 -31.88397 -31.50304 -29.72569 -29.30983 -28.43994 -26.75988 -25.03680 -24.50689 -23.35972 -21.70925 -21.25654 -20.32502 -19.55312 -18.73658 -18.38939 -16.75649 -16.74142 -16.50151 -16.10236 -15.96634 -15.39320 -15.07317 -14.73162 -14.44822 -14.23744 -14.06991 -13.94679 -13.40124 -13.38911 -13.31187 -13.25595 -12.87375 -12.63027 -12.47321 -12.29531 -12.09146 -11.95044 -11.77881 -11.51851 -11.15501 -11.12358 -10.96079 -10.80594 -10.62795 -10.28382 -10.10924 -9.95763 -9.50029 -9.43069 -8.85458 -8.83129 -8.66984 -7.42808 -7.11251 -6.94897 -4.93864 1.46937 2.36767 2.63796 2.72341 2.92091 2.94799 3.04668 3.15448 3.56680 3.78681 4.00199 4.09302 4.40091 4.54697 4.60712 4.62375 4.87529 4.91127 5.18215 5.23496 5.28628 5.37934 5.43882 5.45073 5.56034 5.58090 5.72910 5.74577 5.81552 5.85423 6.05498 6.06592 6.11637 6.15330 6.27358 6.31858 6.48776 6.63212 6.70492 6.89133 7.09765 7.13212 7.21167 7.35720 7.44112 7.50336 7.56043 7.94287 8.12033 8.13624 8.47892 8.77863 8.91784 9.99133 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.003508 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.308342 B = 7979.958773 C = 9176.969712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.120 3.880 4 C -0.145 4.145 5 C 0.145 3.855 6 H 0.093 0.907 7 N -0.718 5.718 8 C 0.597 3.403 9 O -0.553 6.553 10 C -0.001 4.001 11 C -0.155 4.155 12 C -0.127 4.127 13 C -0.071 4.071 14 C -0.163 4.163 15 C -0.119 4.119 16 C -0.124 4.124 17 C 0.079 3.921 18 N -0.288 5.288 19 C -0.375 4.375 20 H 0.120 0.880 21 C 0.089 3.911 22 N -0.834 5.834 23 Si 0.882 3.118 24 H -0.256 1.256 25 H -0.286 1.286 26 H -0.246 1.246 27 C -0.146 4.146 28 C 0.526 3.474 29 O -0.558 6.558 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.421 0.579 38 H 0.140 0.860 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.288 0.712 44 H 0.107 0.893 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 1.320 1.883 4.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.344 5.344 3 C -0.004 4.004 4 C -0.183 4.183 5 C 0.039 3.961 6 H 0.111 0.889 7 N -0.378 5.378 8 C 0.385 3.615 9 O -0.432 6.432 10 C -0.114 4.114 11 C -0.183 4.183 12 C -0.132 4.132 13 C -0.089 4.089 14 C -0.182 4.182 15 C -0.139 4.139 16 C -0.143 4.143 17 C -0.035 4.035 18 N 0.045 4.955 19 C -0.501 4.501 20 H 0.137 0.863 21 C -0.126 4.126 22 N -0.463 5.463 23 Si 0.707 3.293 24 H -0.181 1.181 25 H -0.213 1.213 26 H -0.169 1.169 27 C -0.187 4.187 28 C 0.314 3.686 29 O -0.437 6.437 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.268 0.732 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.252 0.885 2.189 5.758 hybrid contribution 0.837 0.884 -0.369 1.272 sum -4.415 1.769 1.820 5.092 Atomic orbital electron populations 1.21754 0.79801 1.04588 1.01166 1.47264 1.07470 1.06272 1.73389 1.21378 0.92702 0.84328 1.01951 1.22188 0.94328 1.00585 1.01193 1.20888 0.81417 0.93066 1.00758 0.88903 1.46741 1.05410 1.65395 1.20204 1.17213 0.84393 0.76658 0.83204 1.90745 1.79069 1.47345 1.26003 1.20279 0.92164 1.08357 0.90643 1.20533 0.89717 1.07321 1.00699 1.18051 0.93476 1.04847 0.96839 1.20226 0.90805 0.99132 0.98769 1.20384 0.98098 1.03345 0.96383 1.20632 0.95126 1.00712 0.97456 1.20227 0.91150 1.02948 1.00008 1.18542 0.85387 1.01790 0.97758 1.40242 1.02594 1.38214 1.14411 1.19025 1.20496 0.97662 1.12960 0.86347 1.25509 0.97025 0.95507 0.94520 1.69577 1.37056 1.13064 1.26629 0.86763 0.81515 0.78361 0.82671 1.18079 1.21255 1.16883 1.22137 0.90277 1.00792 1.05476 1.20132 0.90753 0.82659 0.75012 1.90676 1.66266 1.35909 1.50823 0.89110 0.92294 0.92250 0.91235 0.90086 0.88335 0.89975 0.73177 0.84229 0.86942 0.87079 0.86811 0.86086 0.90165 0.87510 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.47 59.85 0.63 1.32 16 2 N -0.61 -7.34 3.21 -182.83 -0.59 -7.93 16 3 C 0.12 1.18 6.41 -4.47 -0.03 1.15 16 4 C -0.14 -1.73 5.52 -26.59 -0.15 -1.88 16 5 C 0.14 2.14 2.54 -67.71 -0.17 1.97 16 6 H 0.09 1.45 7.54 -51.93 -0.39 1.06 16 7 N -0.72 -12.86 4.95 -54.84 -0.27 -13.13 16 8 C 0.60 12.35 7.76 -12.76 -0.10 12.25 16 9 O -0.55 -12.17 16.51 5.22 0.09 -12.08 16 10 C 0.00 -0.01 6.77 -82.25 -0.56 -0.57 16 11 C -0.16 -3.26 10.55 -39.02 -0.41 -3.67 16 12 C -0.13 -2.66 6.16 -106.89 -0.66 -3.32 16 13 C -0.07 -1.26 10.06 -39.51 -0.40 -1.65 16 14 C -0.16 -2.70 9.97 -39.95 -0.40 -3.10 16 15 C -0.12 -2.11 10.02 -39.50 -0.40 -2.51 16 16 C -0.12 -2.56 6.86 -39.41 -0.27 -2.83 16 17 C 0.08 1.75 4.57 -83.83 -0.38 1.37 16 18 N -0.29 -6.55 2.41 -56.08 -0.14 -6.68 16 19 C -0.38 -8.63 8.31 -15.00 -0.12 -8.75 16 20 H 0.12 2.74 6.44 -52.49 -0.34 2.41 16 21 C 0.09 2.07 5.49 -17.47 -0.10 1.97 16 22 N -0.83 -19.60 13.95 55.50 0.77 -18.82 16 23 Si 0.88 19.22 23.53 -169.99 -4.00 15.22 16 24 H -0.26 -5.31 6.07 56.52 0.34 -4.97 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.25 -5.77 6.24 56.52 0.35 -5.41 16 27 C -0.15 -2.16 5.65 -28.10 -0.16 -2.32 16 28 C 0.53 7.91 7.47 -11.87 -0.09 7.82 16 29 O -0.56 -10.14 15.95 5.56 0.09 -10.05 16 30 H 0.09 1.06 6.59 -51.93 -0.34 0.71 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.00 8.12 -51.93 -0.42 0.57 16 37 H 0.42 7.88 4.51 -40.82 -0.18 7.70 16 38 H 0.14 2.66 8.06 -52.48 -0.42 2.24 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 2.53 5.72 -52.48 -0.30 2.23 16 43 H 0.29 6.35 8.31 -40.82 -0.34 6.01 16 44 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 45 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -28.59 360.91 -8.23 -36.82 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.87 Total: 13.97 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.76 Total: -2.76 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.22 Total: -46.56 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.17 Total: -22.13 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.00 Total: 15.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.59 -8.23 -36.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619445096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.911 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds