Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45772 * 117.95846 * 2 1 4 4 C 1.52921 * 110.42044 * 199.30713 * 3 2 1 5 5 C 1.53355 * 108.67322 * 309.03297 * 4 3 2 6 6 H 1.08999 * 109.66874 * 307.79553 * 5 4 3 7 7 N 1.46499 * 109.70038 * 187.28626 * 5 4 3 8 8 C 1.34780 * 119.99959 * 152.07165 * 7 5 4 9 9 O 1.21667 * 119.99862 * 4.77594 * 8 7 5 10 10 C 1.46883 * 119.99885 * 184.78778 * 8 7 5 11 11 C 1.36119 * 125.43657 * 185.39387 * 10 8 7 12 12 C 1.41703 * 107.74953 * 179.84611 * 11 10 8 13 13 C 1.40026 * 133.34953 * 180.09256 * 12 11 10 14 14 C 1.36579 * 119.82765 * 180.35231 * 13 12 11 15 15 C 1.38853 * 120.60156 * 359.97438 * 14 13 12 16 16 C 1.37843 * 120.63430 * 359.97438 * 15 14 13 17 17 C 1.39084 * 119.81287 * 0.03331 * 16 15 14 18 18 N 1.37843 * 133.16586 * 179.97438 * 17 16 15 19 19 C 1.36891 * 125.61586 * 0.02562 * 18 17 16 20 20 H 1.08002 * 119.99993 * 126.30974 * 19 18 17 21 21 C 1.39018 * 120.00074 * 306.31325 * 19 18 17 22 22 N 1.31343 * 119.99599 * 183.95221 * 21 19 18 23 23 Si 1.86797 * 119.99929 * 3.95429 * 21 19 18 24 24 H 1.48494 * 109.47299 * 94.88697 * 23 21 19 25 25 H 1.48495 * 109.47004 * 214.89251 * 23 21 19 26 26 H 1.48504 * 109.47234 * 334.88831 * 23 21 19 27 27 C 1.53068 * 108.42633 * 67.52996 * 5 4 3 28 28 C 1.33348 * 117.94638 * 179.74615 * 2 1 3 29 29 O 1.21281 * 118.24769 * 357.75411 * 28 2 1 30 30 H 1.09005 * 109.46904 * 180.25199 * 1 2 3 31 31 H 1.09000 * 109.47228 * 300.25398 * 1 2 3 32 32 H 1.09007 * 109.46752 * 60.25364 * 1 2 3 33 33 H 1.09000 * 109.50877 * 78.90835 * 3 2 1 34 34 H 1.08994 * 108.99148 * 319.38113 * 3 2 1 35 35 H 1.09000 * 109.60315 * 189.27915 * 4 3 2 36 36 H 1.08991 * 109.73741 * 68.86554 * 4 3 2 37 37 H 0.96996 * 120.00176 * 332.05525 * 7 5 4 38 38 H 1.08004 * 126.12552 * 359.97438 * 11 10 8 39 39 H 1.07997 * 120.08458 * 0.36941 * 13 12 11 40 40 H 1.07999 * 119.69730 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.68298 * 180.02562 * 15 14 13 42 42 H 1.08003 * 120.09390 * 179.97438 * 16 15 14 43 43 H 0.97008 * 119.99578 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.39655 * 190.97109 * 27 5 4 45 45 H 1.08993 * 109.39940 * 71.22993 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1485 1.2876 0.0000 4 6 3.5933 1.1248 -0.4738 5 6 4.2509 -0.0011 0.3335 6 1 4.1148 0.1838 1.3991 7 7 5.6811 -0.0616 0.0223 8 6 6.5515 -0.5269 0.9402 9 8 6.1417 -0.9775 1.9935 10 6 7.9946 -0.4899 0.6690 11 6 8.9613 -1.0212 1.4664 12 6 10.2132 -0.7764 0.8493 13 6 11.5336 -1.0854 1.1981 14 6 12.5595 -0.7006 0.3827 15 6 12.3059 -0.0050 -0.7920 16 6 11.0145 0.3097 -1.1571 17 6 9.9534 -0.0713 -0.3428 18 7 8.5879 0.0932 -0.4347 19 6 7.9283 0.7303 -1.4510 20 1 7.1310 0.2262 -1.9770 21 6 8.2847 2.0263 -1.8062 22 7 7.6018 2.6659 -2.7279 23 14 9.7348 2.8578 -0.9725 24 1 10.9542 2.6721 -1.7993 25 1 9.4544 4.3083 -0.8225 26 1 9.9485 2.2539 0.3673 27 6 3.5836 -1.3244 -0.0493 28 6 2.0900 -1.1780 0.0052 29 8 1.4159 -2.1851 0.0515 30 1 -0.3633 -1.0277 0.0045 31 1 -0.3634 0.5178 0.8877 32 1 -0.3633 0.5099 -0.8923 33 1 2.1446 1.7018 1.0082 34 1 1.6238 1.9677 -0.6710 35 1 4.1377 2.0555 -0.3140 36 1 3.6067 0.8706 -1.5336 37 1 6.0018 0.2331 -0.8444 38 1 8.8026 -1.5387 2.4010 39 1 11.7403 -1.6267 2.1095 40 1 13.5771 -0.9404 0.6536 41 1 13.1284 0.2917 -1.4260 42 1 10.8274 0.8515 -2.0725 43 1 7.8502 3.5703 -2.9755 44 1 3.8969 -2.1024 0.6468 45 1 3.8836 -1.6021 -1.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619445096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -17.167449 kcal Electronic energy + Delta-G solvation = -29955.467122 eV Core-core repulsion = 25937.810341 eV Total energy + Delta-G solvation = -4017.656781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54406 -41.68542 -40.25823 -37.87945 -37.73127 -36.24029 -35.31881 -33.30175 -33.01354 -30.91024 -30.73364 -29.93609 -27.76710 -26.72236 -25.67430 -24.64237 -22.98175 -22.80668 -21.82093 -21.08450 -20.29350 -19.65747 -18.25610 -17.90785 -17.66516 -17.59990 -17.20720 -16.80725 -16.42105 -16.30541 -16.00130 -15.56790 -15.44770 -15.21572 -14.99183 -14.85274 -14.82970 -14.43613 -14.33769 -13.91694 -13.64933 -13.58883 -13.32463 -13.16402 -12.97767 -12.86571 -12.61718 -12.49369 -12.32674 -12.23929 -11.99755 -11.86430 -11.65713 -11.38600 -11.13508 -10.93811 -10.44970 -10.15383 -9.79464 -9.00164 -8.81836 -8.57494 -6.70419 -0.06449 0.88963 1.09230 1.21440 1.31751 1.40902 1.45593 1.94174 2.03673 2.15112 2.36341 2.49168 2.66828 3.11118 3.46900 3.57957 3.66806 3.81866 3.93524 3.99658 4.14891 4.27259 4.31378 4.37215 4.46577 4.56173 4.57867 4.61071 4.64631 4.67756 4.74384 4.80627 4.94516 4.96283 5.00255 5.09700 5.10072 5.23448 5.33925 5.42864 5.45892 5.65790 5.71636 5.78853 5.95283 6.02266 6.29355 6.38318 6.53180 6.76044 6.99154 7.18846 7.24188 8.24951 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.003508 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.308342 B = 7979.958773 C = 9176.969712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.121 3.879 4 C -0.138 4.138 5 C 0.144 3.856 6 H 0.086 0.914 7 N -0.711 5.711 8 C 0.593 3.407 9 O -0.574 6.574 10 C -0.027 4.027 11 C -0.157 4.157 12 C -0.148 4.148 13 C -0.072 4.072 14 C -0.155 4.155 15 C -0.104 4.104 16 C -0.159 4.159 17 C 0.057 3.943 18 N -0.304 5.304 19 C -0.375 4.375 20 H 0.108 0.892 21 C 0.067 3.933 22 N -0.856 5.856 23 Si 0.920 3.080 24 H -0.240 1.240 25 H -0.286 1.286 26 H -0.272 1.272 27 C -0.139 4.139 28 C 0.523 3.477 29 O -0.597 6.597 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.419 0.581 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.292 0.708 44 H 0.086 0.914 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 2.276 2.166 4.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.336 5.336 3 C -0.001 4.001 4 C -0.176 4.176 5 C 0.039 3.961 6 H 0.104 0.896 7 N -0.368 5.368 8 C 0.381 3.619 9 O -0.455 6.455 10 C -0.140 4.140 11 C -0.185 4.185 12 C -0.152 4.152 13 C -0.090 4.090 14 C -0.174 4.174 15 C -0.124 4.124 16 C -0.179 4.179 17 C -0.056 4.056 18 N 0.028 4.972 19 C -0.501 4.501 20 H 0.125 0.875 21 C -0.145 4.145 22 N -0.487 5.487 23 Si 0.746 3.254 24 H -0.164 1.164 25 H -0.213 1.213 26 H -0.197 1.197 27 C -0.180 4.180 28 C 0.312 3.688 29 O -0.479 6.479 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.265 0.735 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.129 0.871 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.950 1.887 2.447 5.015 hybrid contribution 0.547 0.520 -0.412 0.860 sum -3.403 2.407 2.035 4.639 Atomic orbital electron populations 1.21938 0.78091 1.03974 1.03557 1.47370 1.08667 1.06005 1.71541 1.21576 0.91111 0.83615 1.03798 1.22150 0.95671 0.99129 1.00626 1.21059 0.79787 0.94293 1.00950 0.89611 1.46724 1.06540 1.64178 1.19367 1.17237 0.84528 0.76767 0.83349 1.90714 1.79359 1.48615 1.26805 1.20583 0.93013 1.09104 0.91276 1.20813 0.89957 1.06784 1.00939 1.18430 0.94831 1.05374 0.96601 1.20676 0.89592 0.98642 1.00098 1.20900 0.99919 1.01454 0.95116 1.21157 0.94751 0.98568 0.97889 1.20373 0.92201 1.05094 1.00201 1.18979 0.85380 1.02452 0.98785 1.40256 1.03067 1.39272 1.14643 1.18933 1.20472 0.97693 1.13048 0.87540 1.25825 0.98047 0.95764 0.94866 1.69599 1.37923 1.13568 1.27574 0.86207 0.81042 0.77279 0.80897 1.16430 1.21298 1.19662 1.21999 0.90847 1.00183 1.04982 1.20031 0.90378 0.83269 0.75155 1.90658 1.66774 1.37389 1.53058 0.91245 0.89980 0.89683 0.89510 0.86726 0.88254 0.90042 0.73544 0.82949 0.83794 0.82620 0.83393 0.87073 0.89707 0.89513 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.47 127.77 1.34 2.51 16 2 N -0.60 -13.66 3.21 -851.55 -2.73 -16.39 16 3 C 0.12 2.08 6.41 86.49 0.55 2.64 16 4 C -0.14 -3.18 5.52 30.69 0.17 -3.01 16 5 C 0.14 4.36 2.54 45.13 0.11 4.48 16 6 H 0.09 2.74 7.54 -2.39 -0.02 2.72 16 7 N -0.71 -26.49 4.95 -445.63 -2.21 -28.70 16 8 C 0.59 25.52 7.76 86.51 0.67 26.19 16 9 O -0.57 -26.18 16.51 -4.24 -0.07 -26.25 16 10 C -0.03 -1.22 6.77 39.91 0.27 -0.95 16 11 C -0.16 -6.67 10.55 22.63 0.24 -6.43 16 12 C -0.15 -6.07 6.16 -21.33 -0.13 -6.21 16 13 C -0.07 -2.33 10.06 22.32 0.22 -2.11 16 14 C -0.16 -4.47 9.97 22.03 0.22 -4.25 16 15 C -0.10 -3.33 10.02 22.32 0.22 -3.11 16 16 C -0.16 -6.40 6.86 22.38 0.15 -6.24 16 17 C 0.06 2.53 4.57 39.06 0.18 2.71 16 18 N -0.30 -14.21 2.41 -331.34 -0.80 -15.01 16 19 C -0.38 -17.79 8.31 84.09 0.70 -17.09 16 20 H 0.11 5.17 6.44 -2.91 -0.02 5.15 16 21 C 0.07 3.17 5.49 84.95 0.47 3.64 16 22 N -0.86 -40.63 13.95 21.67 0.30 -40.33 16 23 Si 0.92 39.79 23.53 68.60 1.61 41.40 16 24 H -0.24 -9.62 6.07 99.48 0.60 -9.02 16 25 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -12.87 6.24 99.48 0.62 -12.25 16 27 C -0.14 -4.29 5.65 29.71 0.17 -4.12 16 28 C 0.52 15.90 7.47 87.72 0.66 16.55 16 29 O -0.60 -22.28 15.95 -3.03 -0.05 -22.33 16 30 H 0.07 1.58 6.59 -2.38 -0.02 1.56 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 37 H 0.42 16.37 4.51 -92.71 -0.42 15.95 16 38 H 0.15 5.84 8.06 -2.91 -0.02 5.82 16 39 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 42 H 0.11 4.60 5.72 -2.91 -0.02 4.59 16 43 H 0.29 12.93 8.31 -92.70 -0.77 12.16 16 44 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -64.30 360.91 2.70 -61.60 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: 0.42 Total: 40.81 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.21 Total: 5.19 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -5.44 Total: -100.42 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.12 Total: -48.58 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.61 Total: 41.40 kcal Total: -64.30 2.70 -61.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619445096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.432 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds