Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35567 * 125.67646 * 2 1 4 4 C 1.35456 * 108.86900 * 180.25105 * 3 2 1 5 5 C 1.39831 * 107.87092 * 359.76747 * 4 3 2 6 6 C 1.37645 * 125.67774 * 179.84559 * 2 1 3 7 7 C 1.46619 * 126.23672 * 0.02562 * 6 2 1 8 8 O 1.21729 * 120.00156 * 3.97823 * 7 6 2 9 9 N 1.34776 * 119.99991 * 183.98278 * 7 6 2 10 10 N 1.40102 * 119.99922 * 174.37647 * 9 7 6 11 11 C 1.29784 * 119.99828 * 179.97438 * 10 9 7 12 12 C 1.47482 * 119.99899 * 179.97438 * 11 10 9 13 13 C 1.39731 * 120.12775 * 0.02562 * 12 11 10 14 14 C 1.37945 * 119.95110 * 179.97438 * 13 12 11 15 15 C 1.38303 * 120.21369 * 359.72338 * 14 13 12 16 16 C 1.38831 * 120.26298 * 0.55054 * 15 14 13 17 17 O 1.35905 * 119.97996 * 179.72180 * 16 15 14 18 18 C 1.42905 * 116.99943 * 359.72789 * 17 16 15 19 19 C 1.53001 * 109.47266 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47047 * 179.97438 * 19 18 17 21 21 H 1.08008 * 119.99948 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00403 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99831 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46894 * 60.00328 * 24 22 20 26 26 H 1.48497 * 109.46852 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.46997 * 300.00186 * 24 22 20 28 28 C 1.38461 * 120.04573 * 359.44884 * 16 15 14 29 29 H 1.09008 * 109.46994 * 264.38018 * 1 2 3 30 30 H 1.09001 * 109.47089 * 24.37016 * 1 2 3 31 31 H 1.08997 * 109.47200 * 144.37816 * 1 2 3 32 32 H 1.07998 * 125.56960 * 0.04615 * 3 2 1 33 33 H 1.07999 * 126.06592 * 179.74027 * 4 3 2 34 34 H 1.08000 * 126.45700 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00135 * 354.36463 * 9 7 6 36 36 H 1.08002 * 120.00092 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.02952 * 359.95015 * 13 12 11 38 38 H 1.07998 * 119.88992 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.86863 * 180.27110 * 15 14 13 40 40 H 1.08999 * 109.47019 * 299.99848 * 18 17 16 41 41 H 1.09007 * 109.46908 * 59.99405 * 18 17 16 42 42 H 1.08999 * 109.47258 * 300.00046 * 19 18 17 43 43 H 1.08998 * 109.46762 * 59.99921 * 19 18 17 44 44 H 0.96998 * 120.00613 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.11342 * 180.24881 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2557 1.1012 0.0000 4 6 3.5524 0.7096 -0.0056 5 6 3.5784 -0.6885 -0.0039 6 6 2.2679 -1.1181 0.0030 7 6 1.8127 -2.5118 0.0062 8 8 0.6241 -2.7642 -0.0667 9 7 2.7103 -3.5137 0.0901 10 7 2.2718 -4.8387 0.2120 11 6 3.1362 -5.8035 0.2922 12 6 2.6746 -7.1983 0.4210 13 6 1.3073 -7.4841 0.4565 14 6 0.8797 -8.7901 0.5766 15 6 1.8000 -9.8193 0.6564 16 6 3.1607 -9.5450 0.6277 17 8 4.0601 -10.5603 0.7122 18 6 3.5349 -11.8837 0.8346 19 6 4.6890 -12.8850 0.9154 20 6 4.1352 -14.2805 1.0451 21 1 3.0668 -14.4376 1.0672 22 6 4.9922 -15.3567 1.1344 23 7 6.2931 -15.1655 1.1069 24 14 4.3057 -17.0867 1.2944 25 1 3.4632 -17.3962 0.1114 26 1 5.4258 -18.0584 1.3729 27 1 3.4824 -17.1804 2.5266 28 6 3.6020 -8.2381 0.5074 29 1 -0.3633 -0.1006 1.0228 30 1 -0.3633 0.9361 -0.4240 31 1 -0.3633 -0.8353 -0.5985 32 1 1.9085 2.1239 0.0007 33 1 4.4135 1.3614 -0.0110 34 1 4.4588 -1.3140 -0.0068 35 1 3.6599 -3.3174 0.0659 36 1 4.1935 -5.5850 0.2646 37 1 0.5858 -6.6832 0.3903 38 1 -0.1774 -9.0099 0.6043 39 1 1.4590 -10.8401 0.7459 40 1 2.9300 -11.9524 1.7387 41 1 2.9171 -12.1112 -0.0341 42 1 5.2937 -12.8162 0.0111 43 1 5.3071 -12.6576 1.7839 44 1 6.8961 -15.9227 1.1693 45 1 4.6602 -8.0238 0.4810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726737102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 40.654100 kcal Electronic energy + Delta-G solvation = -26530.378087 eV Core-core repulsion = 22515.228636 eV Total energy + Delta-G solvation = -4015.149450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83027 -39.85718 -39.37259 -37.62388 -36.37464 -33.70674 -33.38906 -32.76796 -31.09024 -30.48855 -29.41377 -28.78203 -26.96218 -25.31919 -24.33844 -22.83785 -22.41419 -21.41298 -20.90212 -20.43243 -19.87100 -18.55029 -17.57296 -17.29210 -16.35679 -16.19797 -16.11789 -15.66194 -15.36883 -15.24551 -14.99693 -14.82177 -14.56271 -14.30332 -13.94871 -13.73048 -13.40209 -13.28080 -12.91323 -12.89056 -12.77269 -12.50642 -12.43667 -12.33020 -11.60710 -11.46688 -11.43497 -10.89230 -10.83870 -10.64134 -10.51958 -10.36128 -9.94494 -9.72775 -9.68407 -9.33306 -9.24538 -8.78421 -8.47809 -8.41565 -7.88786 -6.11714 -4.16619 0.57193 1.07090 1.60915 1.80346 2.17503 2.35886 2.58492 3.04123 3.28100 3.32642 3.34138 3.72926 3.95548 4.14412 4.34409 4.36002 4.42762 4.50748 4.72718 4.80309 4.87262 4.92424 4.99988 5.14442 5.18889 5.24795 5.29092 5.41641 5.53764 5.54879 5.66378 5.79390 6.00435 6.00870 6.02804 6.21121 6.43561 6.46081 6.48547 6.53314 6.66604 6.67451 6.74271 6.85514 7.17841 7.47355 7.61749 7.77920 7.99908 8.01179 8.21733 8.88711 9.47933 10.99710 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.037408 B = 0.001387 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.325051 B =20186.658103 C =20902.808965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.408 5.408 3 C 0.019 3.981 4 C -0.206 4.206 5 C -0.138 4.138 6 C -0.053 4.053 7 C 0.609 3.391 8 O -0.514 6.514 9 N -0.574 5.574 10 N -0.230 5.230 11 C 0.127 3.873 12 C -0.028 4.028 13 C -0.126 4.126 14 C -0.086 4.086 15 C -0.191 4.191 16 C 0.140 3.860 17 O -0.314 6.314 18 C 0.064 3.936 19 C 0.026 3.974 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C -0.130 4.130 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.172 0.828 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.388 0.612 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 32.732 -2.322 33.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.081 5.081 3 C -0.116 4.116 4 C -0.230 4.230 5 C -0.165 4.165 6 C -0.168 4.168 7 C 0.398 3.602 8 O -0.389 6.389 9 N -0.316 5.316 10 N -0.034 5.034 11 C -0.084 4.084 12 C -0.030 4.030 13 C -0.146 4.146 14 C -0.105 4.105 15 C -0.211 4.211 16 C 0.093 3.907 17 O -0.228 6.228 18 C -0.010 4.010 19 C -0.012 4.012 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.189 0.811 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.227 0.773 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.522 32.864 -2.387 34.298 hybrid contribution 0.941 -0.973 0.111 1.358 sum -8.581 31.891 -2.276 33.103 Atomic orbital electron populations 1.22316 0.75756 1.05040 1.04506 1.43870 1.07007 1.04774 1.52425 1.22114 0.90694 0.91525 1.07311 1.20856 0.96163 0.94911 1.11066 1.21402 0.94209 0.95793 1.05096 1.19723 0.90615 0.86952 1.19526 1.16608 0.85164 0.82339 0.76072 1.90814 1.15847 1.84390 1.47815 1.46451 1.09054 1.02767 1.73311 1.74960 1.27464 0.88203 1.12782 1.24473 0.96684 0.91729 0.95464 1.17918 0.93341 0.88799 1.02990 1.21213 0.94679 0.96904 1.01834 1.20896 0.99414 0.92080 0.98060 1.21586 0.92480 1.00848 1.06210 1.18959 0.88707 0.88866 0.94186 1.86181 1.34130 1.15951 1.86507 1.23362 1.00257 0.77775 0.99563 1.19120 0.92322 0.90867 0.98842 1.20936 0.93115 0.90648 1.51966 0.92394 1.24975 0.94788 0.99423 0.94887 1.69958 1.01880 1.31457 1.49430 0.86550 0.78522 0.83551 0.78775 1.20085 1.21113 1.20089 1.20391 0.99841 0.89335 1.05506 0.90317 0.89557 0.88015 0.81111 0.83698 0.83799 0.77338 0.85929 0.85078 0.85652 0.84887 0.93014 0.93020 0.95367 0.95370 0.92639 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.47 59.85 0.63 1.02 16 2 N -0.41 -3.24 3.16 -120.23 -0.38 -3.62 16 3 C 0.02 0.12 11.37 -16.89 -0.19 -0.08 16 4 C -0.21 -1.30 10.81 -39.98 -0.43 -1.73 16 5 C -0.14 -1.00 10.36 -39.10 -0.40 -1.41 16 6 C -0.05 -0.50 6.89 -81.99 -0.56 -1.06 16 7 C 0.61 7.10 7.89 -12.88 -0.10 7.00 16 8 O -0.51 -7.60 15.12 5.16 0.08 -7.53 16 9 N -0.57 -5.81 6.25 30.25 0.19 -5.62 16 10 N -0.23 -2.79 10.16 32.16 0.33 -2.46 16 11 C 0.13 1.32 10.75 -14.65 -0.16 1.16 16 12 C -0.03 -0.35 5.87 -105.07 -0.62 -0.96 16 13 C -0.13 -1.62 9.58 -39.13 -0.37 -2.00 16 14 C -0.09 -1.11 10.02 -39.66 -0.40 -1.51 16 15 C -0.19 -2.82 9.03 -39.34 -0.36 -3.18 16 16 C 0.14 2.27 6.68 -39.28 -0.26 2.01 16 17 O -0.31 -6.11 10.13 -19.44 -0.20 -6.31 16 18 C 0.06 1.33 4.68 37.16 0.17 1.50 16 19 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 20 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 24 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C -0.13 -1.76 9.73 -38.99 -0.38 -2.14 16 29 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.09 0.26 8.12 -51.93 -0.42 -0.16 16 31 H 0.10 0.81 6.57 -51.93 -0.34 0.47 16 32 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.14 0.68 7.45 -52.49 -0.39 0.29 16 35 H 0.39 2.55 7.55 -182.60 -1.38 1.18 16 36 H 0.12 0.85 8.02 -52.49 -0.42 0.43 16 37 H 0.13 1.67 7.55 -52.49 -0.40 1.27 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 1.91 6.28 -52.49 -0.33 1.58 16 40 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 41 H 0.05 1.01 7.64 -51.93 -0.40 0.61 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 45 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -34.43 392.55 -9.33 -43.75 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.98 Total: -0.71 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -4.00 Total: -14.04 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.87 Total: -37.06 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.12 Total: -13.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.43 -9.33 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726737102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.407 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds