Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35567 * 125.67646 * 2 1 4 4 C 1.35456 * 108.86900 * 180.25105 * 3 2 1 5 5 C 1.39831 * 107.87092 * 359.76747 * 4 3 2 6 6 C 1.37645 * 125.67774 * 179.84559 * 2 1 3 7 7 C 1.46619 * 126.23672 * 0.02562 * 6 2 1 8 8 O 1.21729 * 120.00156 * 3.97823 * 7 6 2 9 9 N 1.34776 * 119.99991 * 183.98278 * 7 6 2 10 10 N 1.40102 * 119.99922 * 174.37647 * 9 7 6 11 11 C 1.29784 * 119.99828 * 179.97438 * 10 9 7 12 12 C 1.47482 * 119.99899 * 179.97438 * 11 10 9 13 13 C 1.39731 * 120.12775 * 0.02562 * 12 11 10 14 14 C 1.37945 * 119.95110 * 179.97438 * 13 12 11 15 15 C 1.38303 * 120.21369 * 359.72338 * 14 13 12 16 16 C 1.38831 * 120.26298 * 0.55054 * 15 14 13 17 17 O 1.35905 * 119.97996 * 179.72180 * 16 15 14 18 18 C 1.42905 * 116.99943 * 359.72789 * 17 16 15 19 19 C 1.53001 * 109.47266 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47047 * 179.97438 * 19 18 17 21 21 H 1.08008 * 119.99948 * 0.02562 * 20 19 18 22 22 C 1.37871 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00403 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99831 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46894 * 60.00328 * 24 22 20 26 26 H 1.48497 * 109.46852 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.46997 * 300.00186 * 24 22 20 28 28 C 1.38461 * 120.04573 * 359.44884 * 16 15 14 29 29 H 1.09008 * 109.46994 * 264.38018 * 1 2 3 30 30 H 1.09001 * 109.47089 * 24.37016 * 1 2 3 31 31 H 1.08997 * 109.47200 * 144.37816 * 1 2 3 32 32 H 1.07998 * 125.56960 * 0.04615 * 3 2 1 33 33 H 1.07999 * 126.06592 * 179.74027 * 4 3 2 34 34 H 1.08000 * 126.45700 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00135 * 354.36463 * 9 7 6 36 36 H 1.08002 * 120.00092 * 359.97438 * 11 10 9 37 37 H 1.08001 * 120.02952 * 359.95015 * 13 12 11 38 38 H 1.07998 * 119.88992 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.86863 * 180.27110 * 15 14 13 40 40 H 1.08999 * 109.47019 * 299.99848 * 18 17 16 41 41 H 1.09007 * 109.46908 * 59.99405 * 18 17 16 42 42 H 1.08999 * 109.47258 * 300.00046 * 19 18 17 43 43 H 1.08998 * 109.46762 * 59.99921 * 19 18 17 44 44 H 0.96998 * 120.00613 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.11342 * 180.24881 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2557 1.1012 0.0000 4 6 3.5524 0.7096 -0.0056 5 6 3.5784 -0.6885 -0.0039 6 6 2.2679 -1.1181 0.0030 7 6 1.8127 -2.5118 0.0062 8 8 0.6241 -2.7642 -0.0667 9 7 2.7103 -3.5137 0.0901 10 7 2.2718 -4.8387 0.2120 11 6 3.1362 -5.8035 0.2922 12 6 2.6746 -7.1983 0.4210 13 6 1.3073 -7.4841 0.4565 14 6 0.8797 -8.7901 0.5766 15 6 1.8000 -9.8193 0.6564 16 6 3.1607 -9.5450 0.6277 17 8 4.0601 -10.5603 0.7122 18 6 3.5349 -11.8837 0.8346 19 6 4.6890 -12.8850 0.9154 20 6 4.1352 -14.2805 1.0451 21 1 3.0668 -14.4376 1.0672 22 6 4.9922 -15.3567 1.1344 23 7 6.2931 -15.1655 1.1069 24 14 4.3057 -17.0867 1.2944 25 1 3.4632 -17.3962 0.1114 26 1 5.4258 -18.0584 1.3729 27 1 3.4824 -17.1804 2.5266 28 6 3.6020 -8.2381 0.5074 29 1 -0.3633 -0.1006 1.0228 30 1 -0.3633 0.9361 -0.4240 31 1 -0.3633 -0.8353 -0.5985 32 1 1.9085 2.1239 0.0007 33 1 4.4135 1.3614 -0.0110 34 1 4.4588 -1.3140 -0.0068 35 1 3.6599 -3.3174 0.0659 36 1 4.1935 -5.5850 0.2646 37 1 0.5858 -6.6832 0.3903 38 1 -0.1774 -9.0099 0.6043 39 1 1.4590 -10.8401 0.7459 40 1 2.9300 -11.9524 1.7387 41 1 2.9171 -12.1112 -0.0341 42 1 5.2937 -12.8162 0.0111 43 1 5.3071 -12.6576 1.7839 44 1 6.8961 -15.9227 1.1693 45 1 4.6602 -8.0238 0.4810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726737102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 20.075706 kcal Electronic energy + Delta-G solvation = -26531.270433 eV Core-core repulsion = 22515.228636 eV Total energy + Delta-G solvation = -4016.041797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37586 -41.05545 -40.21538 -38.81005 -37.36817 -35.44619 -34.36380 -33.49560 -32.59846 -31.64602 -30.57786 -29.64894 -27.43228 -27.06465 -25.42962 -23.82498 -23.53267 -22.79530 -21.63039 -21.37897 -20.72344 -19.39509 -18.74013 -18.19869 -18.04303 -16.99374 -16.92527 -16.90235 -16.77592 -16.62064 -16.16914 -15.70869 -15.61078 -15.32558 -14.55732 -14.46809 -14.37944 -14.32620 -14.26683 -14.16534 -13.80840 -13.32935 -13.23986 -13.15946 -12.96577 -12.94647 -12.63554 -12.58480 -12.53249 -12.05430 -11.60340 -11.57493 -11.42418 -11.37428 -11.22211 -10.70567 -10.58578 -9.74973 -9.53128 -9.25687 -9.05082 -8.24100 -6.37353 -0.36281 0.36876 0.50073 1.09824 1.33365 1.43090 1.46386 1.54269 1.81388 2.03506 2.29106 2.30437 2.52548 2.88426 3.10607 3.43056 3.60136 3.86647 3.94152 4.01615 4.15294 4.15858 4.25125 4.30048 4.32181 4.33982 4.41169 4.45537 4.50052 4.52878 4.69561 4.77575 4.79323 5.01241 5.11692 5.21278 5.32902 5.38365 5.45320 5.49595 5.51801 5.68098 5.70090 5.82024 5.92647 5.96916 6.10310 6.26108 6.39915 6.55847 6.77425 7.23560 7.32747 8.88505 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.037408 B = 0.001387 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.325051 B =20186.658103 C =20902.808965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.419 5.419 3 C 0.031 3.969 4 C -0.220 4.220 5 C -0.130 4.130 6 C -0.093 4.093 7 C 0.604 3.396 8 O -0.559 6.559 9 N -0.565 5.565 10 N -0.264 5.264 11 C 0.134 3.866 12 C -0.025 4.025 13 C -0.127 4.127 14 C -0.083 4.083 15 C -0.199 4.199 16 C 0.107 3.893 17 O -0.335 6.335 18 C 0.083 3.917 19 C 0.028 3.972 20 C -0.548 4.548 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.973 3.027 25 H -0.265 1.265 26 H -0.283 1.283 27 H -0.265 1.265 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.206 0.794 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.405 0.595 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.266 0.734 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 34.586 -2.347 35.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.093 5.093 3 C -0.105 4.105 4 C -0.243 4.243 5 C -0.157 4.157 6 C -0.207 4.207 7 C 0.395 3.605 8 O -0.437 6.437 9 N -0.308 5.308 10 N -0.068 5.068 11 C -0.076 4.076 12 C -0.028 4.028 13 C -0.147 4.147 14 C -0.101 4.101 15 C -0.219 4.219 16 C 0.061 3.939 17 O -0.250 6.250 18 C 0.009 3.991 19 C -0.009 4.009 20 C -0.586 4.586 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.796 3.204 25 H -0.189 1.189 26 H -0.209 1.209 27 H -0.189 1.189 28 C -0.146 4.146 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.223 0.777 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.247 0.753 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.075 0.925 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.038 34.732 -2.412 36.234 hybrid contribution 1.123 -1.309 0.102 1.728 sum -8.915 33.423 -2.310 34.668 Atomic orbital electron populations 1.22352 0.75307 1.05740 1.04229 1.44119 1.07592 1.04958 1.52582 1.22808 0.90583 0.92421 1.04715 1.21246 0.97188 0.94729 1.11105 1.21793 0.93989 0.96792 1.03108 1.19651 0.91819 0.86254 1.22956 1.17080 0.84774 0.83450 0.75168 1.90780 1.17574 1.85122 1.50228 1.46288 1.09885 1.01848 1.72764 1.74876 1.29165 0.89307 1.13431 1.24560 0.98308 0.90293 0.94396 1.18075 0.93006 0.89761 1.01940 1.21402 0.95160 0.97037 1.01135 1.21135 1.00413 0.91516 0.97032 1.21671 0.92218 1.01460 1.06557 1.19262 0.89034 0.88849 0.96714 1.86092 1.35320 1.15851 1.87687 1.22887 0.97873 0.77914 1.00460 1.18958 0.93429 0.92413 0.96124 1.21393 0.93896 0.91597 1.51675 0.91148 1.25984 0.95007 1.04185 0.94281 1.70102 1.03417 1.32876 1.50480 0.85386 0.77919 0.77717 0.79348 1.18935 1.20856 1.18941 1.20560 1.01023 0.88462 1.04548 0.90467 0.86239 0.90527 0.77683 0.81470 0.81756 0.75311 0.82239 0.84886 0.83196 0.84840 0.92045 0.92056 0.98164 0.98164 0.92501 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.47 127.77 1.34 2.10 16 2 N -0.42 -6.18 3.16 -534.28 -1.69 -7.87 16 3 C 0.03 0.29 11.37 83.47 0.95 1.23 16 4 C -0.22 -2.15 10.81 22.01 0.24 -1.92 16 5 C -0.13 -1.63 10.36 22.58 0.23 -1.40 16 6 C -0.09 -1.69 6.89 40.34 0.28 -1.41 16 7 C 0.60 14.24 7.89 86.43 0.68 14.92 16 8 O -0.56 -17.27 15.12 -4.44 -0.07 -17.34 16 9 N -0.56 -11.03 6.25 -176.40 -1.10 -12.13 16 10 N -0.26 -6.18 10.16 -52.15 -0.53 -6.71 16 11 C 0.13 2.56 10.75 87.43 0.94 3.50 16 12 C -0.03 -0.60 5.87 -20.15 -0.12 -0.72 16 13 C -0.13 -3.14 9.58 22.56 0.22 -2.93 16 14 C -0.08 -2.03 10.02 22.22 0.22 -1.81 16 15 C -0.20 -5.77 9.03 22.43 0.20 -5.57 16 16 C 0.11 3.46 6.68 22.47 0.15 3.61 16 17 O -0.34 -13.29 10.13 -92.48 -0.94 -14.23 16 18 C 0.08 3.48 4.68 71.98 0.34 3.82 16 19 C 0.03 1.49 5.34 29.85 0.16 1.65 16 20 C -0.55 -30.39 9.11 25.60 0.23 -30.16 16 21 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 22 C 0.00 0.24 5.46 84.65 0.46 0.70 16 23 N -0.93 -55.79 13.29 21.44 0.28 -55.50 16 24 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 28 C -0.12 -3.28 9.73 22.65 0.22 -3.06 16 29 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.12 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.08 1.31 6.57 -2.39 -0.02 1.30 16 32 H 0.21 0.27 8.06 -2.91 -0.02 0.25 16 33 H 0.17 0.82 8.06 -2.91 -0.02 0.79 16 34 H 0.16 1.16 7.45 -2.91 -0.02 1.14 16 35 H 0.41 4.71 7.55 -213.32 -1.61 3.10 16 36 H 0.16 1.73 8.02 -2.91 -0.02 1.71 16 37 H 0.13 3.29 7.55 -2.91 -0.02 3.26 16 38 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.13 3.77 6.28 -2.91 -0.02 3.76 16 40 H 0.06 2.42 7.67 -2.39 -0.02 2.40 16 41 H 0.06 2.41 7.64 -2.38 -0.02 2.40 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -77.47 392.55 4.14 -73.33 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -0.59 Total: 12.91 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 6.74 Total: -17.45 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -3.04 Total: -82.21 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.00 Total: -31.57 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -77.47 4.14 -73.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726737102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.406 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds