Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35851 * 116.99709 * 2 1 4 4 N 1.30811 * 126.06310 * 359.96599 * 3 2 1 5 5 N 1.39912 * 108.88511 * 180.02562 * 4 3 2 6 6 C 1.46500 * 125.69035 * 180.02562 * 5 4 3 7 7 C 1.34163 * 108.62215 * 359.76485 * 5 4 3 8 8 C 1.38134 * 107.50726 * 0.37321 * 7 5 4 9 9 C 1.47251 * 126.44656 * 179.88945 * 8 7 5 10 10 O 1.21618 * 119.99769 * 151.49822 * 9 8 7 11 11 N 1.34772 * 120.00110 * 331.50328 * 9 8 7 12 12 C 1.47236 * 121.33137 * 185.26078 * 11 9 8 13 13 C 1.52780 * 107.88214 * 116.13400 * 12 11 9 14 14 C 1.50566 * 110.88117 * 47.42085 * 13 12 11 15 15 C 1.41409 * 117.64198 * 159.95140 * 14 13 12 16 16 C 1.41396 * 119.97380 * 358.31419 * 15 14 13 17 17 H 1.07993 * 120.00130 * 26.56147 * 16 15 14 18 18 C 1.39946 * 119.99925 * 206.29098 * 16 15 14 19 19 N 1.30825 * 120.00216 * 15.34052 * 18 16 15 20 20 Si 1.86804 * 119.99926 * 195.34469 * 18 16 15 21 21 H 1.48499 * 109.46920 * 59.99762 * 20 18 16 22 22 H 1.48501 * 109.47236 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46829 * 299.99919 * 20 18 16 24 24 C 1.40417 * 120.05752 * 178.59530 * 15 14 13 25 25 C 1.37640 * 119.54561 * 359.89788 * 24 15 14 26 26 C 1.38342 * 119.98577 * 0.64521 * 25 24 15 27 27 C 1.37043 * 122.98282 * 339.26732 * 14 13 12 28 28 C 1.46661 * 121.33176 * 5.28318 * 11 9 8 29 29 H 1.09004 * 109.47770 * 300.00265 * 1 2 3 30 30 H 1.08998 * 109.47201 * 60.00587 * 1 2 3 31 31 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47116 * 89.97578 * 6 5 4 33 33 H 1.08998 * 109.47614 * 209.97355 * 6 5 4 34 34 H 1.09002 * 109.47114 * 329.97767 * 6 5 4 35 35 H 1.08006 * 126.24595 * 180.26177 * 7 5 4 36 36 H 1.09000 * 109.77656 * 235.72621 * 12 11 9 37 37 H 1.09004 * 109.77392 * 356.53567 * 12 11 9 38 38 H 1.09005 * 109.19747 * 287.05408 * 13 12 11 39 39 H 1.09007 * 109.19454 * 167.77874 * 13 12 11 40 40 H 0.97003 * 119.99877 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.22787 * 180.11205 * 24 15 14 42 42 H 1.07996 * 120.00605 * 180.38402 * 25 24 15 43 43 H 1.07995 * 119.47437 * 179.62480 * 26 25 24 44 44 H 1.09000 * 109.42949 * 104.36920 * 28 11 9 45 45 H 1.09003 * 109.38707 * 344.49939 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2105 0.0000 4 7 1.4530 2.3766 -0.0006 5 7 2.4280 3.3801 -0.0010 6 6 2.1702 4.8222 -0.0012 7 6 3.6384 2.8014 0.0047 8 6 3.4451 1.4337 0.0001 9 6 4.4955 0.4017 0.0013 10 8 4.2786 -0.6861 0.5000 11 7 5.6972 0.6628 -0.5500 12 6 6.7286 -0.3814 -0.6678 13 6 6.9857 -0.6213 -2.1546 14 6 7.1645 0.6828 -2.8856 15 6 7.8235 0.6488 -4.1363 16 6 8.3190 -0.5757 -4.6407 17 1 7.8616 -1.5073 -4.3420 18 6 9.3984 -0.5801 -5.5313 19 7 10.1379 0.4904 -5.6681 20 14 9.7834 -2.1145 -6.5247 21 1 8.6157 -2.4598 -7.3746 22 1 10.9655 -1.8620 -7.3874 23 1 10.0748 -3.2412 -5.6023 24 6 7.9915 1.8310 -4.8751 25 6 7.5091 3.0187 -4.3741 26 6 6.8757 3.0441 -3.1445 27 6 6.7080 1.8797 -2.3987 28 6 6.0301 1.9984 -1.0563 29 1 -0.3635 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.1060 5.1800 1.0265 33 1 2.9824 5.3365 -0.5148 34 1 1.2302 5.0233 -0.5152 35 1 4.5902 3.3118 0.0099 36 1 7.6469 -0.0490 -0.1837 37 1 6.3768 -1.3015 -0.2010 38 1 6.1394 -1.1590 -2.5824 39 1 7.8871 -1.2234 -2.2698 40 1 10.8864 0.4872 -6.2852 41 1 8.4928 1.8079 -5.8314 42 1 7.6287 3.9314 -4.9389 43 1 6.5057 3.9816 -2.7565 44 1 6.6999 2.4955 -0.3546 45 1 5.1165 2.5834 -1.1619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883974473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 48.903262 kcal Electronic energy + Delta-G solvation = -29723.208306 eV Core-core repulsion = 25708.416566 eV Total energy + Delta-G solvation = -4014.791740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62956 -39.44533 -38.31593 -37.81859 -35.37978 -33.67046 -33.05462 -32.29039 -30.43201 -30.05901 -28.60055 -28.01406 -26.41399 -25.28397 -24.97095 -23.17623 -22.05873 -21.20396 -20.51112 -20.06304 -18.60811 -17.42253 -16.92301 -16.70216 -16.37333 -15.90622 -15.54507 -15.29075 -15.17988 -15.02105 -14.84126 -14.37648 -13.80374 -13.64712 -13.30617 -13.24372 -12.97702 -12.92315 -12.78634 -12.37955 -12.30354 -12.00176 -11.75796 -11.54189 -11.37728 -11.25121 -11.15651 -10.96473 -10.87346 -10.81837 -10.50679 -10.17943 -9.74892 -9.49499 -9.30736 -9.19191 -9.12439 -8.54289 -8.11351 -7.33304 -7.28259 -6.77341 -4.39990 1.44375 2.07723 2.30385 2.74523 2.86540 3.05246 3.08408 3.10193 3.18899 3.43042 3.67892 3.91156 4.27200 4.53632 4.56526 4.86497 4.92600 5.08373 5.12625 5.17054 5.24228 5.31883 5.40540 5.45956 5.53667 5.67079 5.77273 5.85078 5.87511 5.96029 6.04936 6.30134 6.35732 6.52224 6.63808 6.76458 6.88877 6.95011 7.07464 7.15152 7.20149 7.32628 7.52749 7.57225 7.75361 7.91107 8.01268 8.02812 8.24109 8.59098 8.63263 8.85272 8.92563 10.16092 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.003175 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.396288 B = 8817.883381 C = 9730.035722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.270 6.270 3 C 0.314 3.686 4 N -0.354 5.354 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.112 3.888 8 C -0.281 4.281 9 C 0.597 3.403 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.117 3.883 13 C -0.070 4.070 14 C -0.169 4.169 15 C 0.111 3.889 16 C -0.459 4.459 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.794 5.794 20 Si 0.906 3.094 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.163 4.163 25 C -0.104 4.104 26 C -0.237 4.237 27 C -0.078 4.078 28 C 0.139 3.861 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.280 0.720 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 7.600 8.858 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.173 6.173 3 C 0.109 3.891 4 N -0.194 5.194 5 N -0.133 5.133 6 C -0.040 4.040 7 C -0.039 4.039 8 C -0.296 4.296 9 C 0.386 3.614 10 O -0.420 6.420 11 N -0.334 5.334 12 C -0.005 4.005 13 C -0.108 4.108 14 C -0.171 4.171 15 C 0.109 3.891 16 C -0.489 4.489 17 H 0.098 0.902 18 C -0.141 4.141 19 N -0.420 5.420 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.183 4.183 25 C -0.123 4.123 26 C -0.257 4.257 27 C -0.079 4.079 28 C 0.017 3.983 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.217 0.783 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.108 7.473 9.008 16.841 hybrid contribution 0.908 -0.623 -0.744 1.329 sum -11.200 6.851 8.265 15.514 Atomic orbital electron populations 1.23006 0.77837 1.03678 1.01878 1.86478 1.21732 1.20621 1.88427 1.20320 0.89942 0.85199 0.93644 1.77235 1.13344 0.94561 1.34230 1.47681 1.03148 1.06404 1.56103 1.21998 1.04647 0.73616 1.03770 1.23580 0.91164 0.92372 0.96805 1.19653 0.91857 0.92771 1.25355 1.17003 0.80551 0.86176 0.77703 1.90749 1.80140 1.24670 1.46467 1.47842 1.14007 1.12118 1.59386 1.21681 0.89729 0.91252 0.97831 1.20445 1.01572 0.96501 0.92276 1.19259 1.08621 0.92582 0.96590 1.17598 0.88988 0.93423 0.89087 1.19581 1.12674 0.94061 1.22544 0.90224 1.25897 0.95109 0.97532 0.95598 1.69807 1.13205 1.29216 1.29743 0.86391 0.78511 0.81969 0.80041 1.18867 1.20384 1.18903 1.21262 1.04024 0.92120 1.00878 1.20567 0.99058 0.96964 0.95676 1.20107 1.11795 0.95429 0.98357 1.19070 1.00491 0.94015 0.94305 1.21010 0.99424 0.83894 0.94022 0.92560 0.92501 0.88105 0.90306 0.88693 0.88899 0.78265 0.91433 0.89465 0.92617 0.90104 0.90866 0.86422 0.89437 0.89683 0.91363 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 101.05 1.08 1.44 16 2 O -0.27 -4.46 10.34 -19.27 -0.20 -4.66 16 3 C 0.31 5.17 7.84 -16.66 -0.13 5.04 16 4 N -0.35 -5.07 11.90 30.79 0.37 -4.71 16 5 N -0.35 -3.99 3.97 -67.60 -0.27 -4.26 16 6 C 0.10 0.60 11.44 59.85 0.68 1.28 16 7 C 0.11 1.36 9.21 -16.57 -0.15 1.21 16 8 C -0.28 -4.60 5.77 -104.95 -0.61 -5.21 16 9 C 0.60 11.27 7.66 -12.60 -0.10 11.17 16 10 O -0.54 -11.85 16.30 5.26 0.09 -11.76 16 11 N -0.60 -10.75 2.94 -175.71 -0.52 -11.26 16 12 C 0.12 2.12 6.45 -3.75 -0.02 2.10 16 13 C -0.07 -1.45 4.97 -28.06 -0.14 -1.59 16 14 C -0.17 -3.88 5.81 -103.91 -0.60 -4.49 16 15 C 0.11 2.84 5.58 -106.67 -0.60 2.24 16 16 C -0.46 -11.68 8.03 -37.74 -0.30 -11.98 16 17 H 0.08 1.96 6.84 -52.49 -0.36 1.60 16 18 C 0.08 1.86 5.17 -17.34 -0.09 1.77 16 19 N -0.79 -19.93 10.90 55.55 0.61 -19.33 16 20 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.16 -4.09 8.65 -38.98 -0.34 -4.43 16 25 C -0.10 -2.31 10.03 -39.76 -0.40 -2.71 16 26 C -0.24 -4.82 9.63 -39.15 -0.38 -5.19 16 27 C -0.08 -1.60 5.82 -104.59 -0.61 -2.21 16 28 C 0.14 2.25 5.06 -5.03 -0.03 2.22 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.20 1.78 5.81 -52.48 -0.30 1.47 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.57 7.07 -51.93 -0.37 1.21 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.68 7.00 -51.93 -0.36 1.31 16 40 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 41 H 0.12 3.07 6.17 -52.49 -0.32 2.74 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.08 1.44 8.05 -52.49 -0.42 1.02 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 1.25 3.75 -51.93 -0.19 1.06 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -33.01 369.39 -7.81 -40.81 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.70 Total: 5.59 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.72 Total: -9.34 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.19 Total: -39.56 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.11 Total: -16.41 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.01 -7.81 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883974473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.717 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds