Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46843 * 2 1 4 4 C 1.42905 * 113.99609 * 184.31643 * 3 2 1 5 5 C 1.53004 * 109.46910 * 174.83809 * 4 3 2 6 6 N 1.46503 * 109.47152 * 65.79597 * 5 4 3 7 7 C 1.46494 * 120.00223 * 65.14778 * 6 5 4 8 8 C 1.53005 * 109.46838 * 85.00038 * 7 6 5 9 9 S 1.65607 * 119.99433 * 244.87449 * 6 5 4 10 10 O 1.42101 * 106.40021 * 210.01945 * 9 6 5 11 11 O 1.42095 * 106.40536 * 342.94002 * 9 6 5 12 12 C 1.76197 * 107.21827 * 96.48460 * 9 6 5 13 13 C 1.38245 * 119.99926 * 263.44031 * 12 9 6 14 14 C 1.38236 * 119.99681 * 179.76343 * 13 12 9 15 15 C 1.38227 * 120.00196 * 0.50986 * 14 13 12 16 16 C 1.50700 * 120.00150 * 179.72030 * 15 14 13 17 17 C 1.50694 * 109.47377 * 270.02319 * 16 15 14 18 18 H 1.08002 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00322 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00342 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99647 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46982 * 90.00410 * 21 19 17 23 23 H 1.48503 * 109.47026 * 210.00372 * 21 19 17 24 24 H 1.48501 * 109.47120 * 329.99997 * 21 19 17 25 25 C 1.38233 * 120.00250 * 359.74320 * 15 14 13 26 26 C 1.38235 * 120.00192 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.47272 * 302.20738 * 1 2 3 28 28 H 1.09006 * 109.47054 * 62.20953 * 1 2 3 29 29 H 1.09005 * 109.46882 * 182.20326 * 1 2 3 30 30 H 1.08997 * 109.47212 * 240.00337 * 2 1 3 31 31 H 1.08996 * 109.47131 * 120.00327 * 2 1 3 32 32 H 1.08991 * 109.47169 * 54.83687 * 4 3 2 33 33 H 1.08999 * 109.47090 * 294.83365 * 4 3 2 34 34 H 1.09001 * 109.46910 * 305.79481 * 5 4 3 35 35 H 1.09002 * 109.46952 * 185.79193 * 5 4 3 36 36 H 1.09000 * 109.46744 * 205.00097 * 7 6 5 37 37 H 1.08994 * 109.47362 * 325.00095 * 7 6 5 38 38 H 1.08993 * 109.47091 * 300.00096 * 8 7 6 39 39 H 1.08997 * 109.47144 * 60.00430 * 8 7 6 40 40 H 1.09007 * 109.46501 * 179.97438 * 8 7 6 41 41 H 1.08002 * 119.99413 * 359.97438 * 13 12 9 42 42 H 1.07997 * 119.99413 * 180.22765 * 14 13 12 43 43 H 1.09004 * 109.46721 * 30.02153 * 16 15 14 44 44 H 1.08999 * 109.47392 * 150.01619 * 16 15 14 45 45 H 0.96999 * 120.00380 * 179.97438 * 20 19 17 46 46 H 1.08008 * 120.00319 * 179.97438 * 25 15 14 47 47 H 1.07999 * 120.00456 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4613 -0.0983 5 6 3.8134 2.9369 -0.2188 6 7 3.4701 3.6345 1.0229 7 6 4.1554 3.2891 2.2708 8 6 5.4666 4.0718 2.3660 9 16 2.3120 4.8183 1.0144 10 8 2.6675 5.7347 2.0407 11 8 2.1389 5.2006 -0.3431 12 6 0.7981 4.0705 1.5178 13 6 -0.1111 3.6433 0.5681 14 6 -1.2967 3.0521 0.9629 15 6 -1.5778 2.8978 2.3075 16 6 -2.8731 2.2591 2.7380 17 6 -3.9290 3.3224 2.8970 18 1 -3.6864 4.3573 2.7059 19 6 -5.2050 2.9741 3.2865 20 7 -6.1266 3.9020 3.4248 21 14 -5.6249 1.1840 3.6165 22 1 -5.3707 0.8713 5.0458 23 1 -7.0572 0.9460 3.3048 24 1 -4.7806 0.3118 2.7611 25 6 -0.6710 3.3298 3.2573 26 6 0.5167 3.9166 2.8625 27 1 -0.3634 0.5477 0.8695 28 1 -0.3633 0.4792 -0.9092 29 1 -0.3633 -1.0270 0.0395 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7751 0.9217 -0.9790 33 1 3.8885 1.0368 0.7935 34 1 3.2717 3.3875 -1.0504 35 1 4.8857 3.0186 -0.3968 36 1 3.5180 3.5434 3.1176 37 1 4.3685 2.2203 2.2844 38 1 6.1038 3.8176 1.5191 39 1 5.2535 5.1407 2.3524 40 1 5.9763 3.8151 3.2948 41 1 0.1065 3.7683 -0.4824 42 1 -2.0052 2.7151 0.2209 43 1 -3.1921 1.5402 1.9833 44 1 -2.7271 1.7468 3.6890 45 1 -7.0243 3.6569 3.6985 46 1 -0.8909 3.2096 4.3079 47 1 1.2250 4.2544 3.6045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885004453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = -102.160064 kcal Electronic energy + Delta-G solvation = -29152.549256 eV Core-core repulsion = 25234.358119 eV Total energy + Delta-G solvation = -3918.191137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.77477 -38.50585 -37.16647 -36.64750 -35.68201 -33.60815 -32.11522 -31.66356 -30.69324 -30.42569 -28.27245 -27.84984 -23.95776 -23.40572 -22.82884 -22.26093 -21.94490 -20.56409 -18.89223 -17.92096 -17.36894 -16.98857 -16.87378 -16.39671 -15.85647 -15.11642 -15.05259 -14.80153 -14.29317 -14.23422 -14.08543 -13.82840 -13.59180 -13.24449 -13.06822 -12.92131 -12.71138 -12.59539 -12.36276 -12.21243 -12.03518 -11.93953 -11.90346 -11.81800 -11.70999 -11.51207 -11.34510 -11.20183 -11.00768 -10.85919 -10.76527 -10.45381 -10.18436 -10.01692 -9.71278 -9.50808 -9.21250 -8.67197 -8.45613 -8.30244 -6.15420 -4.16283 0.55256 1.43851 1.89898 2.98803 3.21592 3.29911 3.30756 3.52712 3.86810 4.19350 4.32989 4.42012 4.58067 4.80735 4.85367 4.97978 5.04256 5.08819 5.11076 5.14894 5.17612 5.24279 5.27545 5.31189 5.35878 5.39566 5.58846 5.65757 5.68916 5.72404 5.89372 5.92737 5.94890 5.97093 6.05558 6.24856 6.30392 6.38328 6.44195 6.61463 6.79068 6.83575 6.87207 7.10150 7.39865 7.42558 7.59017 8.38759 8.89196 9.43193 10.97272 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003648 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.379579 B = 7674.354490 C = 8636.543325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.063 3.937 3 O -0.376 6.376 4 C 0.043 3.957 5 C 0.118 3.882 6 N -0.992 5.992 7 C 0.122 3.878 8 C -0.174 4.174 9 S 2.694 3.306 10 O -0.964 6.964 11 O -0.965 6.965 12 C -0.688 4.688 13 C 0.001 3.999 14 C -0.142 4.142 15 C 0.029 3.971 16 C 0.008 3.992 17 C -0.518 4.518 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.878 3.122 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.146 4.146 26 C -0.024 4.024 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.032 0.968 44 H 0.027 0.973 45 H 0.266 0.734 46 H 0.125 0.875 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.380 -8.164 -6.041 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 O -0.296 6.296 4 C -0.036 4.036 5 C -0.007 4.007 6 N -0.829 5.829 7 C -0.004 4.004 8 C -0.233 4.233 9 S 2.788 3.212 10 O -0.954 6.954 11 O -0.956 6.956 12 C -0.777 4.777 13 C -0.019 4.019 14 C -0.161 4.161 15 C 0.028 3.972 16 C -0.029 4.029 17 C -0.556 4.556 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.705 3.295 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.165 4.165 26 C -0.043 4.043 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.143 0.857 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 23.221 -7.099 -6.211 25.063 hybrid contribution -0.752 -1.775 0.520 1.996 sum 22.469 -8.874 -5.690 24.819 Atomic orbital electron populations 1.21820 0.93336 1.02216 1.04011 1.22416 0.95967 0.83575 0.99361 1.87999 1.20239 1.26407 1.94926 1.22924 0.82925 0.97360 1.00380 1.21426 1.01608 0.91030 0.86652 1.57530 1.53787 1.57225 1.14338 1.21191 0.94134 1.00209 0.84838 1.22233 0.97300 1.01838 1.01931 1.01732 0.73124 0.73016 0.73291 1.93556 1.83101 1.59356 1.59381 1.93523 1.86343 1.80798 1.34890 1.30259 1.22176 1.23569 1.01733 1.20647 0.92236 0.91001 0.98014 1.21102 0.96988 1.01907 0.96095 1.20598 0.94176 0.89566 0.92833 1.18948 0.90298 0.96832 0.96846 1.20847 0.93140 0.94420 1.47147 0.90676 1.24983 0.96094 0.97332 0.94624 1.69887 1.03417 1.32996 1.47035 0.86806 0.77851 0.85707 0.79139 1.20102 1.21127 1.18943 1.21124 0.94099 1.01263 0.99972 1.20659 0.96896 0.93553 0.93228 0.90919 0.91777 0.91447 0.93860 0.93835 0.92521 0.92940 0.87639 0.89323 0.90147 0.90493 0.92434 0.91508 0.91521 0.85389 0.85706 0.94986 0.95490 0.92433 0.85666 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.06 0.62 6.66 37.16 0.25 0.87 16 3 O -0.38 -4.20 10.07 -35.23 -0.35 -4.55 16 4 C 0.04 0.34 6.10 37.16 0.23 0.57 16 5 C 0.12 1.02 6.26 -4.04 -0.03 1.00 16 6 N -0.99 -10.60 2.85 -114.38 -0.33 -10.93 16 7 C 0.12 1.06 5.95 -4.04 -0.02 1.04 16 8 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 9 S 2.69 39.80 5.61 -107.50 -0.60 39.20 16 10 O -0.96 -16.13 16.46 -57.17 -0.94 -17.07 16 11 O -0.97 -16.11 15.51 -57.17 -0.89 -17.00 16 12 C -0.69 -11.23 5.97 -39.58 -0.24 -11.47 16 13 C 0.00 0.01 9.30 -39.58 -0.37 -0.36 16 14 C -0.14 -2.62 8.72 -39.59 -0.35 -2.96 16 15 C 0.03 0.58 5.07 -104.63 -0.53 0.05 16 16 C 0.01 0.18 4.17 -29.04 -0.12 0.06 16 17 C -0.52 -14.35 9.65 -34.44 -0.33 -14.68 16 18 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 21 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 25 C -0.15 -2.69 9.70 -39.58 -0.38 -3.07 16 26 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 27 H 0.07 0.98 7.13 -51.93 -0.37 0.60 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.05 0.37 6.69 -51.93 -0.35 0.02 16 34 H 0.11 1.04 6.70 -51.93 -0.35 0.69 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 37 H 0.08 0.52 6.62 -51.93 -0.34 0.17 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.13 1.99 7.49 -52.49 -0.39 1.60 16 42 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 44 H 0.03 0.60 7.51 -51.93 -0.39 0.21 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.13 2.18 8.06 -52.48 -0.42 1.75 16 47 H 0.12 1.74 7.77 -52.49 -0.41 1.33 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -33.84 396.02 -10.24 -44.08 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.60 Total: 0.64 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -1.60 Total: -30.14 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.45 Total: -37.19 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -2.18 Total: -38.62 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 39.80 SS G_CDS: -0.60 Total: 39.20 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.84 -10.24 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885004453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.079 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds