Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.46843 * 2 1 4 4 C 1.42905 * 113.99609 * 184.31643 * 3 2 1 5 5 C 1.53004 * 109.46910 * 174.83809 * 4 3 2 6 6 N 1.46503 * 109.47152 * 65.79597 * 5 4 3 7 7 C 1.46494 * 120.00223 * 65.14778 * 6 5 4 8 8 C 1.53005 * 109.46838 * 85.00038 * 7 6 5 9 9 S 1.65607 * 119.99433 * 244.87449 * 6 5 4 10 10 O 1.42101 * 106.40021 * 210.01945 * 9 6 5 11 11 O 1.42095 * 106.40536 * 342.94002 * 9 6 5 12 12 C 1.76197 * 107.21827 * 96.48460 * 9 6 5 13 13 C 1.38245 * 119.99926 * 263.44031 * 12 9 6 14 14 C 1.38236 * 119.99681 * 179.76343 * 13 12 9 15 15 C 1.38227 * 120.00196 * 0.50986 * 14 13 12 16 16 C 1.50700 * 120.00150 * 179.72030 * 15 14 13 17 17 C 1.50694 * 109.47377 * 270.02319 * 16 15 14 18 18 H 1.08002 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00322 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00342 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99647 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46982 * 90.00410 * 21 19 17 23 23 H 1.48503 * 109.47026 * 210.00372 * 21 19 17 24 24 H 1.48501 * 109.47120 * 329.99997 * 21 19 17 25 25 C 1.38233 * 120.00250 * 359.74320 * 15 14 13 26 26 C 1.38235 * 120.00192 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.47272 * 302.20738 * 1 2 3 28 28 H 1.09006 * 109.47054 * 62.20953 * 1 2 3 29 29 H 1.09005 * 109.46882 * 182.20326 * 1 2 3 30 30 H 1.08997 * 109.47212 * 240.00337 * 2 1 3 31 31 H 1.08996 * 109.47131 * 120.00327 * 2 1 3 32 32 H 1.08991 * 109.47169 * 54.83687 * 4 3 2 33 33 H 1.08999 * 109.47090 * 294.83365 * 4 3 2 34 34 H 1.09001 * 109.46910 * 305.79481 * 5 4 3 35 35 H 1.09002 * 109.46952 * 185.79193 * 5 4 3 36 36 H 1.09000 * 109.46744 * 205.00097 * 7 6 5 37 37 H 1.08994 * 109.47362 * 325.00095 * 7 6 5 38 38 H 1.08993 * 109.47091 * 300.00096 * 8 7 6 39 39 H 1.08997 * 109.47144 * 60.00430 * 8 7 6 40 40 H 1.09007 * 109.46501 * 179.97438 * 8 7 6 41 41 H 1.08002 * 119.99413 * 359.97438 * 13 12 9 42 42 H 1.07997 * 119.99413 * 180.22765 * 14 13 12 43 43 H 1.09004 * 109.46721 * 30.02153 * 16 15 14 44 44 H 1.08999 * 109.47392 * 150.01619 * 16 15 14 45 45 H 0.96999 * 120.00380 * 179.97438 * 20 19 17 46 46 H 1.08008 * 120.00319 * 179.97438 * 25 15 14 47 47 H 1.07999 * 120.00456 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4274 1.4613 -0.0983 5 6 3.8134 2.9369 -0.2188 6 7 3.4701 3.6345 1.0229 7 6 4.1554 3.2891 2.2708 8 6 5.4666 4.0718 2.3660 9 16 2.3120 4.8183 1.0144 10 8 2.6675 5.7347 2.0407 11 8 2.1389 5.2006 -0.3431 12 6 0.7981 4.0705 1.5178 13 6 -0.1111 3.6433 0.5681 14 6 -1.2967 3.0521 0.9629 15 6 -1.5778 2.8978 2.3075 16 6 -2.8731 2.2591 2.7380 17 6 -3.9290 3.3224 2.8970 18 1 -3.6864 4.3573 2.7059 19 6 -5.2050 2.9741 3.2865 20 7 -6.1266 3.9020 3.4248 21 14 -5.6249 1.1840 3.6165 22 1 -5.3707 0.8713 5.0458 23 1 -7.0572 0.9460 3.3048 24 1 -4.7806 0.3118 2.7611 25 6 -0.6710 3.3298 3.2573 26 6 0.5167 3.9166 2.8625 27 1 -0.3634 0.5477 0.8695 28 1 -0.3633 0.4792 -0.9092 29 1 -0.3633 -1.0270 0.0395 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.7751 0.9217 -0.9790 33 1 3.8885 1.0368 0.7935 34 1 3.2717 3.3875 -1.0504 35 1 4.8857 3.0186 -0.3968 36 1 3.5180 3.5434 3.1176 37 1 4.3685 2.2203 2.2844 38 1 6.1038 3.8176 1.5191 39 1 5.2535 5.1407 2.3524 40 1 5.9763 3.8151 3.2948 41 1 0.1065 3.7683 -0.4824 42 1 -2.0052 2.7151 0.2209 43 1 -3.1921 1.5402 1.9833 44 1 -2.7271 1.7468 3.6890 45 1 -7.0243 3.6569 3.6985 46 1 -0.8909 3.2096 4.3079 47 1 1.2250 4.2544 3.6045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885004453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = -124.533925 kcal Electronic energy + Delta-G solvation = -29153.519459 eV Core-core repulsion = 25234.358119 eV Total energy + Delta-G solvation = -3919.161340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18675 -39.23668 -38.39793 -37.43081 -36.93513 -35.51497 -33.50959 -32.80907 -31.91906 -31.32892 -29.67271 -28.95998 -25.24802 -24.58858 -23.68432 -23.55463 -22.75943 -22.13583 -19.97443 -19.01881 -18.95513 -18.53205 -17.78312 -17.19695 -16.78507 -16.71862 -16.21807 -15.96629 -15.64886 -15.51123 -15.22632 -14.83841 -14.61922 -14.42184 -14.32377 -14.15280 -13.97586 -13.61522 -13.59946 -13.43377 -13.35610 -13.17540 -13.11788 -12.86337 -12.69209 -12.54954 -12.51385 -12.31552 -12.07762 -12.03182 -11.90931 -11.89308 -11.72513 -11.65844 -11.40282 -10.82196 -10.38680 -10.06307 -9.84761 -9.80154 -8.32908 -6.39886 -0.60277 0.03210 0.49108 1.35521 1.37505 1.49014 1.96121 2.32854 2.60763 2.78628 2.94303 3.01448 3.29588 3.82640 3.90174 4.01877 4.13028 4.16356 4.21825 4.27383 4.39549 4.42273 4.49033 4.50627 4.53479 4.57399 4.59811 4.68053 4.76575 4.85053 4.89373 4.94922 5.02073 5.02532 5.04763 5.12426 5.18527 5.21574 5.30242 5.36191 5.37658 5.45795 5.50845 5.70434 5.83203 6.01215 6.21083 6.45127 6.66737 7.23864 8.83735 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003648 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.379579 B = 7674.354490 C = 8636.543325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 O -0.405 6.405 4 C 0.039 3.961 5 C 0.111 3.889 6 N -0.982 5.982 7 C 0.113 3.887 8 C -0.173 4.173 9 S 2.709 3.291 10 O -0.985 6.985 11 O -0.986 6.986 12 C -0.687 4.687 13 C 0.000 4.000 14 C -0.146 4.146 15 C 0.000 4.000 16 C 0.016 3.984 17 C -0.525 4.525 18 H 0.025 0.975 19 C 0.009 3.991 20 N -0.948 5.948 21 Si 0.953 3.047 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.241 1.241 25 C -0.155 4.155 26 C -0.023 4.023 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.126 0.874 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.269 0.731 46 H 0.131 0.869 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.280 -10.773 -6.238 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.012 4.012 3 O -0.325 6.325 4 C -0.039 4.039 5 C -0.014 4.014 6 N -0.821 5.821 7 C -0.012 4.012 8 C -0.232 4.232 9 S 2.801 3.199 10 O -0.975 6.975 11 O -0.977 6.977 12 C -0.775 4.775 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.001 4.001 16 C -0.021 4.021 17 C -0.563 4.563 18 H 0.043 0.957 19 C -0.188 4.188 20 N -0.588 5.588 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.164 1.164 25 C -0.174 4.174 26 C -0.042 4.042 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.157 0.843 42 H 0.144 0.856 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.149 0.851 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 26.124 -9.715 -6.409 28.599 hybrid contribution -1.498 -0.866 0.523 1.807 sum 24.626 -10.580 -5.887 27.442 Atomic orbital electron populations 1.21826 0.94886 1.02521 1.02288 1.22431 0.94739 0.83406 1.00633 1.87967 1.22163 1.27166 1.95201 1.23098 0.81561 0.97004 1.02199 1.21743 1.03506 0.91117 0.84991 1.57277 1.52030 1.56761 1.16060 1.21478 0.94135 1.02047 0.83507 1.22235 0.97151 1.00133 1.03660 1.01225 0.72942 0.73390 0.72297 1.93527 1.83179 1.60794 1.59976 1.93491 1.86714 1.81649 1.35811 1.30698 1.23117 1.22029 1.01611 1.20761 0.91743 0.90655 0.98819 1.21143 0.97658 1.02111 0.95570 1.20469 0.93947 0.91703 0.93960 1.18774 0.90234 0.95596 0.97527 1.21081 0.94955 0.93590 1.46691 0.95657 1.26002 0.95757 1.02806 0.94228 1.70057 1.04094 1.35910 1.48742 0.85628 0.77785 0.79252 0.79840 1.18856 1.20946 1.16448 1.21266 0.94607 1.01494 1.00047 1.20915 0.96568 0.92730 0.93982 0.93599 0.92552 0.90087 0.91908 0.93069 0.90206 0.91414 0.89095 0.85775 0.90808 0.87696 0.90784 0.93871 0.89778 0.84282 0.85633 0.94301 0.94448 0.92244 0.85112 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.28 71.98 0.74 -2.62 16 2 C 0.06 1.11 6.66 71.98 0.48 1.59 16 3 O -0.40 -8.12 10.07 -148.98 -1.50 -9.62 16 4 C 0.04 0.49 6.10 71.98 0.44 0.93 16 5 C 0.11 1.57 6.26 86.38 0.54 2.11 16 6 N -0.98 -18.60 2.85 -515.78 -1.47 -20.07 16 7 C 0.11 1.62 5.95 86.38 0.51 2.13 16 8 C -0.17 -2.19 10.24 71.98 0.74 -1.46 16 9 S 2.71 77.31 5.61 -56.49 -0.32 76.99 16 10 O -0.98 -32.18 16.46 -128.00 -2.11 -34.29 16 11 O -0.99 -32.31 15.51 -128.00 -1.99 -34.30 16 12 C -0.69 -22.11 5.97 22.27 0.13 -21.97 16 13 C 0.00 -0.02 9.30 22.27 0.21 0.19 16 14 C -0.15 -5.50 8.72 22.27 0.19 -5.30 16 15 C 0.00 -0.02 5.07 -19.87 -0.10 -0.12 16 16 C 0.02 0.73 4.17 29.10 0.12 0.85 16 17 C -0.53 -30.22 9.65 25.60 0.25 -29.97 16 18 H 0.03 1.65 7.98 -2.91 -0.02 1.63 16 19 C 0.01 0.55 5.47 84.66 0.46 1.01 16 20 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 21 Si 0.95 42.77 27.47 68.60 1.88 44.66 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 25 C -0.16 -5.76 9.70 22.27 0.22 -5.55 16 26 C -0.02 -0.74 9.52 22.27 0.21 -0.53 16 27 H 0.04 1.22 7.13 -2.39 -0.02 1.20 16 28 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 33 H 0.07 0.65 6.69 -2.39 -0.02 0.64 16 34 H 0.09 1.60 6.70 -2.39 -0.02 1.59 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.17 7.79 -2.39 -0.02 1.16 16 37 H 0.10 0.96 6.62 -2.39 -0.02 0.94 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.04 0.76 7.94 -2.39 -0.02 0.74 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.14 4.34 7.49 -2.91 -0.02 4.31 16 42 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.04 1.72 7.14 -2.38 -0.02 1.70 16 44 H 0.04 1.63 7.51 -2.39 -0.02 1.61 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 47 H 0.15 3.99 7.77 -2.91 -0.02 3.97 16 Total: -1.00 -76.30 396.02 0.84 -75.46 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.89 Total: 18.90 kcal Atomic # 6 Polarization: -63.85 SS G_CDS: 5.14 Total: -58.71 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.17 Total: -79.09 kcal Atomic # 8 Polarization: -72.62 SS G_CDS: -5.59 Total: -78.21 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.66 kcal Atomic # 16 Polarization: 77.31 SS G_CDS: -0.32 Total: 76.99 kcal Total: -76.30 0.84 -75.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885004453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.072 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds